Wall clock time and date at job start Tue Mar 31 2020 00:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46577 * 2 1 4 4 H 1.08997 * 115.55450 * 29.32876 * 3 2 1 5 5 C 1.52997 * 117.51528 * 243.62149 * 3 2 1 6 6 C 1.53000 * 60.00347 * 252.52230 * 5 3 2 7 7 H 1.09004 * 117.49237 * 107.48843 * 6 5 3 8 8 C 1.50696 * 117.50175 * 252.51187 * 6 5 3 9 9 O 1.21279 * 120.00205 * 68.61876 * 8 6 5 10 10 N 1.34777 * 119.99769 * 248.62488 * 8 6 5 11 11 C 1.46499 * 119.99839 * 179.97438 * 10 8 6 12 12 H 1.09005 * 110.56234 * 36.44416 * 11 10 8 13 13 C 1.54853 * 110.62705 * 273.54370 * 11 10 8 14 14 C 1.55842 * 103.44380 * 241.50917 * 13 11 10 15 15 H 1.09008 * 115.55813 * 158.81308 * 14 13 11 16 16 C 1.55841 * 105.06483 * 287.42104 * 14 13 11 17 17 C 1.56677 * 102.59985 * 72.30551 * 16 14 13 18 18 C 1.55841 * 110.62918 * 159.51749 * 11 10 8 19 19 H 1.09010 * 115.56104 * 319.67708 * 18 11 10 20 20 N 1.50234 * 101.05445 * 32.93813 * 14 13 11 21 21 C 1.36939 * 130.84041 * 126.06188 * 20 14 13 22 22 H 1.08000 * 119.99552 * 179.97438 * 21 20 14 23 23 C 1.38812 * 119.99878 * 359.97438 * 21 20 14 24 24 N 1.31610 * 119.99993 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99724 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46966 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47003 * 119.99989 * 25 23 21 28 28 H 1.48497 * 109.46717 * 240.00210 * 25 23 21 29 29 H 1.09006 * 109.47125 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47231 * 300.00046 * 1 2 3 31 31 H 1.09003 * 109.46956 * 60.00304 * 1 2 3 32 32 H 1.08989 * 109.47384 * 239.99950 * 2 1 3 33 33 H 1.09003 * 109.46956 * 119.99696 * 2 1 3 34 34 H 1.09002 * 117.49910 * 145.03371 * 5 3 2 35 35 H 1.09002 * 117.49884 * 0.02562 * 5 3 2 36 36 H 0.96996 * 120.00346 * 359.97438 * 10 8 6 37 37 H 1.09000 * 110.62577 * 359.97438 * 13 11 10 38 38 H 1.08997 * 110.62821 * 122.86033 * 13 11 10 39 39 H 1.09005 * 110.62692 * 190.31805 * 16 14 13 40 40 H 1.09001 * 110.62761 * 313.33264 * 16 14 13 41 41 H 1.09001 * 110.35659 * 241.21900 * 17 16 14 42 42 H 1.08998 * 110.88798 * 118.36440 * 17 16 14 43 43 H 0.97006 * 120.00027 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.3883 2.1715 0.4817 5 6 2.8439 1.9081 -1.2156 6 6 3.5501 1.6580 0.1184 7 1 4.1803 0.7720 0.1958 8 6 4.0227 2.8618 0.8920 9 8 3.2157 3.6163 1.3923 10 7 5.3423 3.1001 1.0277 11 6 5.8017 4.2706 1.7793 12 1 5.1494 4.4582 2.6322 13 6 5.8707 5.5157 0.8612 14 6 7.3785 5.9083 0.8958 15 1 7.7245 6.5197 0.0622 16 6 7.6071 6.5133 2.3136 17 6 7.5427 5.2503 3.2386 18 6 7.2772 4.0806 2.2435 19 1 7.5341 3.0820 2.5971 20 7 8.0245 4.5588 1.0311 21 6 8.9959 3.9517 0.2807 22 1 9.3373 2.9603 0.5395 23 6 9.5417 4.6105 -0.8124 24 7 9.1252 5.8184 -1.1279 25 14 10.8674 3.7826 -1.8355 26 1 11.1561 2.4374 -1.2766 27 1 10.3971 3.6451 -3.2373 28 1 12.1022 4.6069 -1.8062 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 2.7211 2.9434 -1.5338 35 1 3.0093 1.1867 -2.0159 36 1 5.9878 2.4965 0.6278 37 1 5.5635 5.2622 -0.1534 38 1 5.2526 6.3207 1.2587 39 1 8.5876 6.9853 2.3762 40 1 6.8201 7.2268 2.5581 41 1 6.7221 5.3428 3.9501 42 1 8.4877 5.1028 3.7612 43 1 9.5063 6.2787 -1.8921 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097881824.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:30 Heat of formation + Delta-G solvation = 17.727381 kcal Electronic energy + Delta-G solvation = -22276.948487 eV Core-core repulsion = 19130.506046 eV Total energy + Delta-G solvation = -3146.442441 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.92868 -38.74609 -36.76767 -33.68297 -32.51644 -32.09938 -29.10537 -28.81560 -27.86416 -24.59350 -24.09383 -23.59536 -21.25203 -20.42325 -19.82955 -19.44770 -18.63741 -17.02396 -16.90450 -15.83720 -14.89743 -14.84678 -14.68955 -14.30422 -14.16896 -13.81111 -13.47623 -12.97911 -12.57983 -12.39053 -12.17817 -12.02116 -11.83837 -11.42559 -11.21890 -11.11999 -11.10079 -10.94149 -10.92124 -10.49501 -10.39500 -10.24766 -10.08791 -10.03161 -9.89612 -9.61937 -9.23585 -9.11383 -8.97094 -8.40167 -6.95675 -5.75487 -3.14754 2.85116 3.34955 3.40026 3.42938 3.55316 3.95035 4.39418 4.65019 4.79058 4.87345 5.09380 5.13502 5.21017 5.30829 5.34113 5.37742 5.61930 5.63607 5.68898 5.75469 5.80925 5.88083 5.91931 6.01128 6.02693 6.06318 6.12907 6.16415 6.31032 6.32513 6.43372 6.50580 6.60886 6.76174 6.83522 6.95972 7.15716 7.34277 7.46553 7.78337 8.07121 8.16694 8.70092 9.06094 9.69410 10.50735 11.33444 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018240 B = 0.004790 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.688231 B = 5844.430346 C = 6838.998124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 C -0.121 4.121 4 H 0.116 0.884 5 C -0.148 4.148 6 C -0.188 4.188 7 H 0.120 0.880 8 C 0.538 3.462 9 O -0.555 6.555 10 N -0.701 5.701 11 C 0.129 3.871 12 H 0.076 0.924 13 C -0.142 4.142 14 C 0.153 3.847 15 H 0.152 0.848 16 C -0.139 4.139 17 C -0.127 4.127 18 C 0.125 3.875 19 H 0.088 0.912 20 N -0.590 5.590 21 C -0.214 4.214 22 H 0.079 0.921 23 C -0.010 4.010 24 N -0.919 5.919 25 Si 0.914 3.086 26 H -0.281 1.281 27 H -0.291 1.291 28 H -0.291 1.291 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.402 0.598 37 H 0.058 0.942 38 H 0.052 0.948 39 H 0.055 0.945 40 H 0.050 0.950 41 H 0.051 0.949 42 H 0.057 0.943 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.937 -8.064 2.897 13.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.132 4.132 3 C -0.140 4.140 4 H 0.134 0.866 5 C -0.186 4.186 6 C -0.209 4.209 7 H 0.137 0.863 8 C 0.324 3.676 9 O -0.434 6.434 10 N -0.350 5.350 11 C 0.023 3.977 12 H 0.094 0.906 13 C -0.182 4.182 14 C 0.046 3.954 15 H 0.169 0.831 16 C -0.178 4.178 17 C -0.167 4.167 18 C 0.017 3.983 19 H 0.106 0.894 20 N -0.311 5.311 21 C -0.342 4.342 22 H 0.096 0.904 23 C -0.206 4.206 24 N -0.567 5.567 25 Si 0.745 3.255 26 H -0.206 1.206 27 H -0.218 1.218 28 H -0.218 1.218 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.237 0.763 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.249 -7.545 3.006 13.874 hybrid contribution 1.141 -0.668 -0.700 1.496 sum -10.107 -8.213 2.305 13.226 Atomic orbital electron populations 1.21739 0.95350 1.01412 1.02123 1.21145 0.96099 0.93906 1.02019 1.22437 0.91750 0.98350 1.01441 0.86586 1.23065 1.02040 1.03112 0.90350 1.22320 0.97172 0.99329 1.02065 0.86252 1.19577 0.82706 0.85358 0.79947 1.90639 1.54136 1.49183 1.49487 1.45945 1.06260 1.28345 1.54407 1.22627 0.96199 0.85176 0.93724 0.90579 1.23446 1.00045 0.95994 0.98714 1.23713 0.87722 0.87850 0.96099 0.83142 1.23365 0.99982 0.95850 0.98648 1.23166 0.99838 0.96753 0.96961 1.23158 0.89571 0.96101 0.89497 0.89439 1.46521 1.41898 1.14528 1.28149 1.19045 1.10928 0.98711 1.05483 0.90360 1.24700 1.00335 0.96684 0.98867 1.69478 1.45115 1.12753 1.29322 0.86000 0.81211 0.78271 0.79983 1.20611 1.21838 1.21816 0.92792 0.92541 0.92554 0.91748 0.91542 0.88340 0.88030 0.76310 0.92352 0.92936 0.92616 0.93124 0.93072 0.92423 0.93604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.87 37.16 0.37 -0.86 16 2 C -0.09 -0.88 6.22 -26.73 -0.17 -1.04 16 3 C -0.12 -1.44 5.25 -90.62 -0.48 -1.92 16 4 H 0.12 1.58 7.60 -51.93 -0.39 1.18 16 5 C -0.15 -1.79 9.88 -26.73 -0.26 -2.06 16 6 C -0.19 -2.51 5.91 -91.77 -0.54 -3.05 16 7 H 0.12 1.37 8.14 -51.93 -0.42 0.95 16 8 C 0.54 9.32 7.61 -10.99 -0.08 9.24 16 9 O -0.56 -11.35 15.98 5.56 0.09 -11.26 16 10 N -0.70 -12.37 5.10 -51.40 -0.26 -12.63 16 11 C 0.13 2.46 2.73 -65.44 -0.18 2.28 16 12 H 0.08 1.46 7.36 -51.93 -0.38 1.08 16 13 C -0.14 -2.96 6.22 -24.24 -0.15 -3.11 16 14 C 0.15 3.51 4.67 -62.81 -0.29 3.21 16 15 H 0.15 3.97 5.52 -51.92 -0.29 3.68 16 16 C -0.14 -2.77 6.58 -23.23 -0.15 -2.92 16 17 C -0.13 -2.33 6.49 -23.23 -0.15 -2.48 16 18 C 0.13 2.45 5.04 -62.80 -0.32 2.13 16 19 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 20 N -0.59 -13.98 2.99 -145.82 -0.44 -14.42 16 21 C -0.21 -5.56 10.59 -15.06 -0.16 -5.72 16 22 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 23 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 24 N -0.92 -25.75 10.46 55.49 0.58 -25.17 16 25 Si 0.91 21.32 29.55 -169.99 -5.02 16.29 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 28 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.54 7.88 -51.94 -0.41 0.13 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.10 1.02 8.03 -51.93 -0.42 0.60 16 36 H 0.40 6.83 8.62 -40.82 -0.35 6.48 16 37 H 0.06 1.33 7.98 -51.93 -0.41 0.91 16 38 H 0.05 1.04 7.81 -51.93 -0.41 0.63 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.05 0.91 7.81 -51.93 -0.41 0.50 16 41 H 0.05 0.83 7.82 -51.93 -0.41 0.42 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 343.80 15.07 5.18 5.18 Total: -1.00 -29.48 343.80 -9.76 -39.24 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -7.22 Total: 9.44 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -2.66 Total: -6.67 kcal Atomic # 7 Polarization: -52.10 SS G_CDS: -0.12 Total: -52.22 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.09 Total: -11.26 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.48 -9.76 -39.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097881824.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.969 kcal (2) G-P(sol) polarization free energy of solvation -29.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds