Wall clock time and date at job start Tue Mar 31 2020 00:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46577 * 2 1 4 4 H 1.08997 * 115.55450 * 29.32876 * 3 2 1 5 5 C 1.52997 * 117.51528 * 243.62149 * 3 2 1 6 6 C 1.53000 * 60.00347 * 252.52230 * 5 3 2 7 7 H 1.09004 * 117.49237 * 107.48843 * 6 5 3 8 8 C 1.50696 * 117.50175 * 252.51187 * 6 5 3 9 9 O 1.21279 * 120.00205 * 68.61876 * 8 6 5 10 10 N 1.34777 * 119.99769 * 248.62488 * 8 6 5 11 11 C 1.46499 * 119.99839 * 179.97438 * 10 8 6 12 12 H 1.09005 * 110.56234 * 36.44416 * 11 10 8 13 13 C 1.54853 * 110.62705 * 273.54370 * 11 10 8 14 14 C 1.55842 * 103.44380 * 241.50917 * 13 11 10 15 15 H 1.09008 * 115.55813 * 158.81308 * 14 13 11 16 16 C 1.55841 * 105.06483 * 287.42104 * 14 13 11 17 17 C 1.56677 * 102.59985 * 72.30551 * 16 14 13 18 18 C 1.55841 * 110.62918 * 159.51749 * 11 10 8 19 19 H 1.09010 * 115.56104 * 319.67708 * 18 11 10 20 20 N 1.50234 * 101.05445 * 32.93813 * 14 13 11 21 21 C 1.36939 * 130.84041 * 126.06188 * 20 14 13 22 22 H 1.08000 * 119.99552 * 179.97438 * 21 20 14 23 23 C 1.38812 * 119.99878 * 359.97438 * 21 20 14 24 24 N 1.31610 * 119.99993 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99724 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46966 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47003 * 119.99989 * 25 23 21 28 28 H 1.48497 * 109.46717 * 240.00210 * 25 23 21 29 29 H 1.09006 * 109.47125 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47231 * 300.00046 * 1 2 3 31 31 H 1.09003 * 109.46956 * 60.00304 * 1 2 3 32 32 H 1.08989 * 109.47384 * 239.99950 * 2 1 3 33 33 H 1.09003 * 109.46956 * 119.99696 * 2 1 3 34 34 H 1.09002 * 117.49910 * 145.03371 * 5 3 2 35 35 H 1.09002 * 117.49884 * 0.02562 * 5 3 2 36 36 H 0.96996 * 120.00346 * 359.97438 * 10 8 6 37 37 H 1.09000 * 110.62577 * 359.97438 * 13 11 10 38 38 H 1.08997 * 110.62821 * 122.86033 * 13 11 10 39 39 H 1.09005 * 110.62692 * 190.31805 * 16 14 13 40 40 H 1.09001 * 110.62761 * 313.33264 * 16 14 13 41 41 H 1.09001 * 110.35659 * 241.21900 * 17 16 14 42 42 H 1.08998 * 110.88798 * 118.36440 * 17 16 14 43 43 H 0.97006 * 120.00027 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.3883 2.1715 0.4817 5 6 2.8439 1.9081 -1.2156 6 6 3.5501 1.6580 0.1184 7 1 4.1803 0.7720 0.1958 8 6 4.0227 2.8618 0.8920 9 8 3.2157 3.6163 1.3923 10 7 5.3423 3.1001 1.0277 11 6 5.8017 4.2706 1.7793 12 1 5.1494 4.4582 2.6322 13 6 5.8707 5.5157 0.8612 14 6 7.3785 5.9083 0.8958 15 1 7.7245 6.5197 0.0622 16 6 7.6071 6.5133 2.3136 17 6 7.5427 5.2503 3.2386 18 6 7.2772 4.0806 2.2435 19 1 7.5341 3.0820 2.5971 20 7 8.0245 4.5588 1.0311 21 6 8.9959 3.9517 0.2807 22 1 9.3373 2.9603 0.5395 23 6 9.5417 4.6105 -0.8124 24 7 9.1252 5.8184 -1.1279 25 14 10.8674 3.7826 -1.8355 26 1 11.1561 2.4374 -1.2766 27 1 10.3971 3.6451 -3.2373 28 1 12.1022 4.6069 -1.8062 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 2.7211 2.9434 -1.5338 35 1 3.0093 1.1867 -2.0159 36 1 5.9878 2.4965 0.6278 37 1 5.5635 5.2622 -0.1534 38 1 5.2526 6.3207 1.2587 39 1 8.5876 6.9853 2.3762 40 1 6.8201 7.2268 2.5581 41 1 6.7221 5.3428 3.9501 42 1 8.4877 5.1028 3.7612 43 1 9.5063 6.2787 -1.8921 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097881824.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:29 Heat of formation + Delta-G solvation = 1.377163 kcal Electronic energy + Delta-G solvation = -22277.657486 eV Core-core repulsion = 19130.506046 eV Total energy + Delta-G solvation = -3147.151440 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.37708 -40.20738 -37.91520 -35.25563 -34.37658 -32.88981 -30.96864 -30.41181 -29.46499 -26.23454 -25.41358 -24.56670 -22.67534 -21.54362 -21.37906 -20.87186 -20.24753 -18.84184 -18.20684 -17.30016 -16.77284 -16.03310 -15.97133 -15.65955 -15.34763 -15.27060 -14.93530 -14.49449 -13.73501 -13.68792 -13.47992 -13.38447 -12.98136 -12.91620 -12.88218 -12.77510 -12.67082 -12.18533 -12.09811 -11.97157 -11.91589 -11.88585 -11.69302 -11.28298 -11.14761 -11.00621 -10.96705 -10.91192 -10.58000 -9.93086 -8.87427 -7.75299 -5.15568 1.49392 1.50206 1.54743 1.59315 2.25733 2.50742 2.89100 3.37910 3.44798 3.67501 3.79824 3.87305 4.00582 4.06238 4.19742 4.27463 4.28497 4.43723 4.47028 4.49928 4.57983 4.61774 4.70123 4.77501 4.82098 4.88694 4.94068 4.99133 5.07417 5.15892 5.16382 5.18298 5.23732 5.31165 5.37313 5.50831 5.52308 5.60610 5.72257 5.88888 6.26709 6.67324 7.06050 7.31398 7.72926 8.58715 9.32222 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018240 B = 0.004790 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.688231 B = 5844.430346 C = 6838.998124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.090 4.090 3 C -0.112 4.112 4 H 0.094 0.906 5 C -0.144 4.144 6 C -0.197 4.197 7 H 0.145 0.855 8 C 0.534 3.466 9 O -0.591 6.591 10 N -0.701 5.701 11 C 0.139 3.861 12 H 0.082 0.918 13 C -0.132 4.132 14 C 0.139 3.861 15 H 0.114 0.886 16 C -0.133 4.133 17 C -0.119 4.119 18 C 0.128 3.872 19 H 0.105 0.895 20 N -0.609 5.609 21 C -0.213 4.213 22 H 0.087 0.913 23 C -0.068 4.068 24 N -0.949 5.949 25 Si 0.974 3.026 26 H -0.264 1.264 27 H -0.298 1.298 28 H -0.300 1.300 29 H 0.069 0.931 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.129 0.871 36 H 0.407 0.593 37 H 0.030 0.970 38 H 0.062 0.938 39 H 0.039 0.961 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.062 0.938 43 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.501 -10.345 3.734 15.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.127 4.127 3 C -0.131 4.131 4 H 0.113 0.887 5 C -0.182 4.182 6 C -0.218 4.218 7 H 0.162 0.838 8 C 0.322 3.678 9 O -0.472 6.472 10 N -0.349 5.349 11 C 0.032 3.968 12 H 0.100 0.900 13 C -0.172 4.172 14 C 0.032 3.968 15 H 0.131 0.869 16 C -0.172 4.172 17 C -0.158 4.158 18 C 0.021 3.979 19 H 0.123 0.877 20 N -0.330 5.330 21 C -0.341 4.341 22 H 0.105 0.895 23 C -0.260 4.260 24 N -0.599 5.599 25 Si 0.804 3.196 26 H -0.189 1.189 27 H -0.226 1.226 28 H -0.227 1.227 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.147 0.853 36 H 0.242 0.758 37 H 0.049 0.951 38 H 0.080 0.920 39 H 0.058 0.942 40 H 0.090 0.910 41 H 0.099 0.901 42 H 0.080 0.920 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -11.822 -9.857 3.870 15.871 hybrid contribution 1.256 0.079 -0.938 1.570 sum -10.566 -9.778 2.933 14.691 Atomic orbital electron populations 1.21744 0.94716 1.02358 1.01820 1.21167 0.96611 0.91877 1.03035 1.22475 0.90381 0.99645 1.00570 0.88749 1.23156 1.01419 1.02883 0.90701 1.22366 0.98558 0.98381 1.02478 0.83768 1.20244 0.82077 0.86025 0.79435 1.90617 1.54842 1.50754 1.51013 1.45935 1.06722 1.27902 1.54318 1.22438 0.96071 0.84863 0.93396 0.90014 1.23303 0.98764 0.97437 0.97723 1.23545 0.88681 0.87834 0.96713 0.86876 1.23270 0.99835 0.96985 0.97096 1.23121 1.01273 0.94769 0.96651 1.23366 0.88874 0.97403 0.88279 0.87712 1.46704 1.41911 1.15042 1.29388 1.19408 1.10611 0.98906 1.05216 0.89502 1.25439 1.02726 0.97413 1.00465 1.69736 1.46448 1.14101 1.29622 0.85048 0.78445 0.77931 0.78134 1.18873 1.22579 1.22750 0.91201 0.93236 0.92565 0.90169 0.91012 0.90227 0.85313 0.75828 0.95139 0.91960 0.94200 0.91021 0.90148 0.91968 0.94576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.87 71.98 0.71 -1.43 16 2 C -0.09 -1.42 6.22 30.60 0.19 -1.23 16 3 C -0.11 -2.50 5.25 -10.79 -0.06 -2.55 16 4 H 0.09 2.54 7.60 -2.39 -0.02 2.53 16 5 C -0.14 -3.26 9.88 30.59 0.30 -2.96 16 6 C -0.20 -4.94 5.91 -11.54 -0.07 -5.00 16 7 H 0.14 2.88 8.14 -2.38 -0.02 2.86 16 8 C 0.53 18.08 7.61 87.66 0.67 18.75 16 9 O -0.59 -24.03 15.98 -3.03 -0.05 -24.08 16 10 N -0.70 -23.97 5.10 -434.92 -2.22 -26.19 16 11 C 0.14 5.13 2.73 46.61 0.13 5.25 16 12 H 0.08 2.98 7.36 -2.38 -0.02 2.96 16 13 C -0.13 -5.54 6.22 32.21 0.20 -5.34 16 14 C 0.14 6.46 4.67 46.23 0.22 6.67 16 15 H 0.11 6.23 5.52 -2.38 -0.01 6.22 16 16 C -0.13 -5.17 6.58 32.86 0.22 -4.95 16 17 C -0.12 -4.04 6.49 32.86 0.21 -3.82 16 18 C 0.13 4.76 5.04 46.23 0.23 4.99 16 19 H 0.11 3.54 8.14 -2.38 -0.02 3.52 16 20 N -0.61 -28.63 2.99 -615.24 -1.84 -30.47 16 21 C -0.21 -10.99 10.59 84.03 0.89 -10.10 16 22 H 0.09 4.24 7.83 -2.91 -0.02 4.21 16 23 C -0.07 -3.68 5.50 84.86 0.47 -3.21 16 24 N -0.95 -54.90 10.46 21.65 0.23 -54.68 16 25 Si 0.97 44.18 29.55 68.60 2.03 46.21 16 26 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 27 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 28 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 29 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.08 1.05 7.88 -2.39 -0.02 1.03 16 33 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.13 2.21 8.03 -2.39 -0.02 2.19 16 36 H 0.41 13.26 8.62 -92.71 -0.80 12.46 16 37 H 0.03 1.41 7.98 -2.39 -0.02 1.39 16 38 H 0.06 2.44 7.81 -2.39 -0.02 2.42 16 39 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 40 H 0.07 2.46 7.81 -2.39 -0.02 2.44 16 41 H 0.08 2.30 7.82 -2.39 -0.02 2.28 16 42 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.24 13.93 8.31 -92.70 -0.77 13.16 16 Total: -1.00 -64.59 343.80 2.65 -61.94 By element: Atomic # 1 Polarization: 32.02 SS G_CDS: 0.19 Total: 32.21 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: 4.31 Total: -4.95 kcal Atomic # 7 Polarization: -107.51 SS G_CDS: -3.83 Total: -111.34 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: -0.05 Total: -24.08 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -64.59 2.65 -61.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097881824.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.321 kcal (2) G-P(sol) polarization free energy of solvation -64.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds