Wall clock time and date at job start Mon Mar 30 2020 23:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32871 * 1 3 3 C 1.47112 * 120.00168 * 2 1 4 4 C 1.50700 * 119.99976 * 5.49566 * 3 2 1 5 5 C 1.32869 * 120.00008 * 185.50036 * 3 2 1 6 6 C 1.50696 * 120.00031 * 6.24643 * 5 3 2 7 7 C 1.50701 * 109.46875 * 126.12831 * 6 5 3 8 8 O 1.21271 * 120.00505 * 359.97438 * 7 6 5 9 9 N 1.34788 * 119.99662 * 179.72659 * 7 6 5 10 10 C 1.46496 * 119.99726 * 180.27254 * 9 7 6 11 11 C 1.52999 * 109.47236 * 179.97438 * 10 9 7 12 12 C 1.53777 * 113.61967 * 274.14341 * 11 10 9 13 13 C 1.53953 * 87.02048 * 220.04574 * 12 11 10 14 14 N 1.46502 * 113.74372 * 139.94023 * 13 12 11 15 15 C 1.36937 * 119.99713 * 107.40211 * 14 13 12 16 16 H 1.07998 * 120.00506 * 0.02562 * 15 14 13 17 17 C 1.38817 * 119.99638 * 179.97438 * 15 14 13 18 18 N 1.31623 * 119.99952 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99790 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47004 * 60.00138 * 19 17 15 21 21 H 1.48497 * 109.46773 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47139 * 299.99774 * 19 17 15 23 23 C 1.53780 * 87.11322 * 25.35937 * 13 12 11 24 24 H 1.07998 * 119.99884 * 359.97438 * 1 2 3 25 25 H 1.08003 * 120.00464 * 180.02562 * 1 2 3 26 26 H 1.08005 * 119.99686 * 180.02562 * 2 1 3 27 27 H 1.09005 * 109.47462 * 270.00234 * 4 3 2 28 28 H 1.08997 * 109.47174 * 29.99951 * 4 3 2 29 29 H 1.08997 * 109.47001 * 149.99995 * 4 3 2 30 30 H 1.08006 * 120.00045 * 186.25146 * 5 3 2 31 31 H 1.09000 * 109.47343 * 6.12889 * 6 5 3 32 32 H 1.08996 * 109.47194 * 246.12547 * 6 5 3 33 33 H 0.96998 * 119.99757 * 0.27473 * 9 7 6 34 34 H 1.08996 * 109.47489 * 299.99805 * 10 9 7 35 35 H 1.09005 * 109.47350 * 59.99938 * 10 9 7 36 36 H 1.09001 * 112.84396 * 45.33282 * 11 10 9 37 37 H 1.09005 * 113.61274 * 334.56162 * 12 11 10 38 38 H 1.08997 * 113.62126 * 105.45869 * 12 11 10 39 39 H 1.09003 * 113.53223 * 270.80784 * 13 12 11 40 40 H 0.96997 * 120.00100 * 287.40060 * 14 13 12 41 41 H 0.96999 * 119.99215 * 180.02562 * 18 17 15 42 42 H 1.09002 * 113.61760 * 220.09581 * 23 13 12 43 43 H 1.08995 * 113.61268 * 89.18570 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2740 0.0000 4 6 1.3160 2.5761 0.1250 5 6 3.3884 1.2766 -0.1103 6 6 4.1249 -0.0109 -0.3764 7 6 5.0035 0.1545 -1.5895 8 8 5.0288 1.2133 -2.1802 9 7 5.7651 -0.8730 -2.0151 10 6 6.6237 -0.7103 -3.1909 11 6 7.3761 -2.0156 -3.4574 12 6 8.6829 -2.1478 -2.6577 13 6 9.3044 -2.7566 -3.9279 14 7 10.6766 -2.3120 -4.1845 15 6 11.7233 -3.1727 -3.9875 16 1 11.5373 -4.1793 -3.6433 17 6 13.0234 -2.7516 -4.2312 18 7 13.2499 -1.5252 -4.6522 19 14 14.4513 -3.9254 -3.9617 20 1 14.2884 -5.1127 -4.8387 21 1 15.7258 -3.2383 -4.2913 22 1 14.4748 -4.3585 -2.5415 23 6 8.2452 -1.9778 -4.7256 24 1 -0.5400 0.9353 0.0004 25 1 -0.5401 -0.9353 0.0004 26 1 1.8687 -0.9354 -0.0004 27 1 1.0503 2.9393 -0.8678 28 1 0.4093 2.4195 0.7092 29 1 1.9472 3.3114 0.6240 30 1 3.9369 2.2015 -0.0092 31 1 3.4060 -0.8106 -0.5547 32 1 4.7410 -0.2621 0.4869 33 1 5.7445 -1.7200 -1.5429 34 1 6.0107 -0.4606 -4.0568 35 1 7.3401 0.0911 -3.0097 36 1 6.7345 -2.8944 -3.3938 37 1 9.1198 -1.1904 -2.3737 38 1 8.6162 -2.8474 -1.8246 39 1 9.1911 -3.8388 -3.9921 40 1 10.8436 -1.4081 -4.4941 41 1 14.1584 -1.2312 -4.8228 42 1 7.8255 -2.5405 -5.5595 43 1 8.5621 -0.9739 -5.0079 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100581334.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:22 Heat of formation + Delta-G solvation = 16.956086 kcal Electronic energy + Delta-G solvation = -20411.739268 eV Core-core repulsion = 17265.263381 eV Total energy + Delta-G solvation = -3146.475887 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.89831 -38.51472 -37.14852 -34.65883 -33.29260 -32.29338 -30.53108 -30.04042 -27.54914 -25.41434 -25.08740 -23.76948 -22.16271 -21.04869 -20.60067 -19.06146 -17.91246 -17.20131 -16.96780 -16.28304 -16.05105 -15.15425 -15.09324 -14.75957 -14.35684 -13.96600 -13.66261 -13.47114 -13.33638 -12.97303 -12.80666 -12.61550 -12.31327 -11.93535 -11.85370 -11.74834 -11.39598 -11.23357 -10.95354 -10.83041 -10.74184 -10.53757 -10.25257 -10.17259 -9.84637 -9.83383 -9.48615 -9.01865 -8.86955 -8.49912 -6.97088 -5.78735 -3.07719 1.05505 2.60851 2.69030 3.26999 3.42638 3.46992 3.48266 4.36342 4.56942 4.57694 4.65345 4.81695 4.97507 5.00314 5.06253 5.17461 5.23132 5.24042 5.36281 5.41476 5.46065 5.47242 5.51168 5.74367 5.82581 5.85204 5.93484 6.08139 6.08698 6.13535 6.26256 6.31366 6.35738 6.43083 6.46406 6.58609 6.64988 6.82411 7.10740 7.47709 7.67745 8.20058 8.39829 9.50679 10.09103 10.43268 11.43533 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.043919 B = 0.002310 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.389314 B =12119.475458 C =12223.630374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.125 4.125 3 C -0.114 4.114 4 C -0.114 4.114 5 C -0.115 4.115 6 C -0.120 4.120 7 C 0.513 3.487 8 O -0.541 6.541 9 N -0.727 5.727 10 C 0.132 3.868 11 C -0.127 4.127 12 C -0.161 4.161 13 C 0.166 3.834 14 N -0.713 5.713 15 C -0.245 4.245 16 H 0.071 0.929 17 C -0.014 4.014 18 N -0.932 5.932 19 Si 0.908 3.092 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.142 4.142 24 H 0.101 0.899 25 H 0.100 0.900 26 H 0.117 0.883 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.120 0.880 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.400 0.600 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.053 0.947 39 H 0.075 0.925 40 H 0.385 0.615 41 H 0.256 0.744 42 H 0.061 0.939 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.527 1.942 9.914 26.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.143 4.143 3 C -0.114 4.114 4 C -0.171 4.171 5 C -0.133 4.133 6 C -0.160 4.160 7 C 0.299 3.701 8 O -0.418 6.418 9 N -0.378 5.378 10 C 0.008 3.992 11 C -0.146 4.146 12 C -0.202 4.202 13 C 0.054 3.946 14 N -0.350 5.350 15 C -0.376 4.376 16 H 0.088 0.912 17 C -0.210 4.210 18 N -0.580 5.580 19 Si 0.739 3.261 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.212 1.212 23 C -0.182 4.182 24 H 0.119 0.881 25 H 0.118 0.882 26 H 0.135 0.865 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.138 0.862 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.234 0.766 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.096 0.904 38 H 0.072 0.928 39 H 0.093 0.907 40 H 0.219 0.781 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -24.318 2.578 9.480 26.227 hybrid contribution 0.908 -0.766 0.290 1.223 sum -23.410 1.813 9.770 25.431 Atomic orbital electron populations 1.24426 0.95749 1.02046 0.99935 1.21976 0.95374 0.96328 1.00574 1.20560 0.93857 0.94378 1.02574 1.20778 0.99979 0.94175 1.02166 1.22813 0.94025 0.97855 0.98636 1.20850 0.99180 0.98670 0.97263 1.20515 0.80176 0.83878 0.85551 1.90707 1.66203 1.27000 1.57847 1.46074 1.44526 1.15396 1.31816 1.21426 0.92661 0.98119 0.86946 1.22635 0.95802 0.96217 0.99974 1.23971 0.94859 1.01929 0.99461 1.21547 0.84647 0.96355 0.92077 1.42406 0.99709 1.14234 1.78691 1.19257 0.86048 0.94562 1.37761 0.91152 1.24784 0.97487 0.96651 1.02047 1.69655 1.20094 1.16456 1.51793 0.86255 0.82033 0.79951 0.77861 1.21241 1.21681 1.21248 1.23444 0.97265 1.01862 0.95653 0.88101 0.88166 0.86525 0.91276 0.91845 0.91593 0.86157 0.88078 0.87852 0.76624 0.91870 0.91273 0.89429 0.90384 0.92786 0.90711 0.78058 0.93388 0.92006 0.90115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.23 14.07 28.88 0.41 -0.82 16 2 C -0.12 -0.96 9.20 -37.83 -0.35 -1.31 16 3 C -0.11 -1.00 5.98 -102.87 -0.61 -1.62 16 4 C -0.11 -0.85 9.38 36.01 0.34 -0.51 16 5 C -0.11 -1.11 8.43 -36.16 -0.30 -1.42 16 6 C -0.12 -1.02 5.92 -29.04 -0.17 -1.19 16 7 C 0.51 6.30 7.82 -10.98 -0.09 6.21 16 8 O -0.54 -9.02 16.03 5.56 0.09 -8.93 16 9 N -0.73 -7.99 5.56 -60.30 -0.33 -8.32 16 10 C 0.13 1.73 5.50 -4.04 -0.02 1.71 16 11 C -0.13 -1.68 3.75 -89.81 -0.34 -2.01 16 12 C -0.16 -2.63 7.45 -25.83 -0.19 -2.82 16 13 C 0.17 3.19 4.48 -67.03 -0.30 2.89 16 14 N -0.71 -17.78 5.41 -52.55 -0.28 -18.06 16 15 C -0.25 -6.77 9.97 -15.06 -0.15 -6.92 16 16 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 17 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 18 N -0.93 -28.20 13.06 55.49 0.72 -27.48 16 19 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 C -0.14 -2.26 7.40 -25.92 -0.19 -2.45 16 24 H 0.10 0.61 6.31 -52.49 -0.33 0.28 16 25 H 0.10 0.53 8.06 -52.48 -0.42 0.11 16 26 H 0.12 0.75 6.00 -52.48 -0.31 0.43 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.39 6.67 -51.93 -0.35 0.04 16 29 H 0.07 0.45 8.06 -51.93 -0.42 0.04 16 30 H 0.12 1.24 8.04 -52.48 -0.42 0.82 16 31 H 0.10 0.67 5.41 -51.93 -0.28 0.39 16 32 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.40 3.27 8.47 -40.82 -0.35 2.93 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 1.05 7.87 -51.93 -0.41 0.64 16 36 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.08 1.42 7.92 -51.93 -0.41 1.01 16 38 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.07 1.42 8.10 -51.93 -0.42 1.00 16 40 H 0.39 10.26 7.92 -40.82 -0.32 9.94 16 41 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.08 1.36 8.08 -51.93 -0.42 0.94 16 LS Contribution 357.67 15.07 5.39 5.39 Total: -1.00 -32.75 357.67 -8.46 -41.21 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -6.95 Total: 9.67 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -2.07 Total: -10.74 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: 0.11 Total: -53.86 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.09 Total: -8.93 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.75 -8.46 -41.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100581334.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.164 kcal (2) G-P(sol) polarization free energy of solvation -32.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds