Wall clock time and date at job start Mon Mar 30 2020 23:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32871 * 1 3 3 C 1.47112 * 120.00168 * 2 1 4 4 C 1.50700 * 119.99976 * 5.49566 * 3 2 1 5 5 C 1.32869 * 120.00008 * 185.50036 * 3 2 1 6 6 C 1.50696 * 120.00031 * 6.24643 * 5 3 2 7 7 C 1.50701 * 109.46875 * 126.12831 * 6 5 3 8 8 O 1.21271 * 120.00505 * 359.97438 * 7 6 5 9 9 N 1.34788 * 119.99662 * 179.72659 * 7 6 5 10 10 C 1.46496 * 119.99726 * 180.27254 * 9 7 6 11 11 C 1.52999 * 109.47236 * 179.97438 * 10 9 7 12 12 C 1.53777 * 113.61967 * 274.14341 * 11 10 9 13 13 C 1.53953 * 87.02048 * 220.04574 * 12 11 10 14 14 N 1.46502 * 113.74372 * 139.94023 * 13 12 11 15 15 C 1.36937 * 119.99713 * 107.40211 * 14 13 12 16 16 H 1.07998 * 120.00506 * 0.02562 * 15 14 13 17 17 C 1.38817 * 119.99638 * 179.97438 * 15 14 13 18 18 N 1.31623 * 119.99952 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99790 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47004 * 60.00138 * 19 17 15 21 21 H 1.48497 * 109.46773 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47139 * 299.99774 * 19 17 15 23 23 C 1.53780 * 87.11322 * 25.35937 * 13 12 11 24 24 H 1.07998 * 119.99884 * 359.97438 * 1 2 3 25 25 H 1.08003 * 120.00464 * 180.02562 * 1 2 3 26 26 H 1.08005 * 119.99686 * 180.02562 * 2 1 3 27 27 H 1.09005 * 109.47462 * 270.00234 * 4 3 2 28 28 H 1.08997 * 109.47174 * 29.99951 * 4 3 2 29 29 H 1.08997 * 109.47001 * 149.99995 * 4 3 2 30 30 H 1.08006 * 120.00045 * 186.25146 * 5 3 2 31 31 H 1.09000 * 109.47343 * 6.12889 * 6 5 3 32 32 H 1.08996 * 109.47194 * 246.12547 * 6 5 3 33 33 H 0.96998 * 119.99757 * 0.27473 * 9 7 6 34 34 H 1.08996 * 109.47489 * 299.99805 * 10 9 7 35 35 H 1.09005 * 109.47350 * 59.99938 * 10 9 7 36 36 H 1.09001 * 112.84396 * 45.33282 * 11 10 9 37 37 H 1.09005 * 113.61274 * 334.56162 * 12 11 10 38 38 H 1.08997 * 113.62126 * 105.45869 * 12 11 10 39 39 H 1.09003 * 113.53223 * 270.80784 * 13 12 11 40 40 H 0.96997 * 120.00100 * 287.40060 * 14 13 12 41 41 H 0.96999 * 119.99215 * 180.02562 * 18 17 15 42 42 H 1.09002 * 113.61760 * 220.09581 * 23 13 12 43 43 H 1.08995 * 113.61268 * 89.18570 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2740 0.0000 4 6 1.3160 2.5761 0.1250 5 6 3.3884 1.2766 -0.1103 6 6 4.1249 -0.0109 -0.3764 7 6 5.0035 0.1545 -1.5895 8 8 5.0288 1.2133 -2.1802 9 7 5.7651 -0.8730 -2.0151 10 6 6.6237 -0.7103 -3.1909 11 6 7.3761 -2.0156 -3.4574 12 6 8.6829 -2.1478 -2.6577 13 6 9.3044 -2.7566 -3.9279 14 7 10.6766 -2.3120 -4.1845 15 6 11.7233 -3.1727 -3.9875 16 1 11.5373 -4.1793 -3.6433 17 6 13.0234 -2.7516 -4.2312 18 7 13.2499 -1.5252 -4.6522 19 14 14.4513 -3.9254 -3.9617 20 1 14.2884 -5.1127 -4.8387 21 1 15.7258 -3.2383 -4.2913 22 1 14.4748 -4.3585 -2.5415 23 6 8.2452 -1.9778 -4.7256 24 1 -0.5400 0.9353 0.0004 25 1 -0.5401 -0.9353 0.0004 26 1 1.8687 -0.9354 -0.0004 27 1 1.0503 2.9393 -0.8678 28 1 0.4093 2.4195 0.7092 29 1 1.9472 3.3114 0.6240 30 1 3.9369 2.2015 -0.0092 31 1 3.4060 -0.8106 -0.5547 32 1 4.7410 -0.2621 0.4869 33 1 5.7445 -1.7200 -1.5429 34 1 6.0107 -0.4606 -4.0568 35 1 7.3401 0.0911 -3.0097 36 1 6.7345 -2.8944 -3.3938 37 1 9.1198 -1.1904 -2.3737 38 1 8.6162 -2.8474 -1.8246 39 1 9.1911 -3.8388 -3.9921 40 1 10.8436 -1.4081 -4.4941 41 1 14.1584 -1.2312 -4.8228 42 1 7.8255 -2.5405 -5.5595 43 1 8.5621 -0.9739 -5.0079 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100581334.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:22 Heat of formation + Delta-G solvation = -4.187068 kcal Electronic energy + Delta-G solvation = -20412.656104 eV Core-core repulsion = 17265.263381 eV Total energy + Delta-G solvation = -3147.392723 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.92513 -39.81019 -37.81789 -36.02441 -34.98203 -32.98420 -32.16096 -30.92039 -28.72667 -26.45603 -26.38905 -25.49769 -22.81377 -22.38316 -21.59227 -20.45176 -19.05305 -18.53218 -18.00660 -17.28413 -16.87906 -16.59123 -16.19923 -15.93770 -15.56463 -15.30842 -14.89270 -14.72987 -14.34545 -14.16714 -13.47865 -13.41498 -13.24886 -13.22498 -13.06033 -12.91634 -12.88031 -12.61315 -12.43565 -12.24273 -12.08016 -11.61403 -11.55397 -11.49209 -11.31482 -11.10098 -10.86777 -10.76477 -10.05277 -9.11807 -8.97524 -7.94107 -5.22639 0.45004 1.47357 1.50590 1.56666 1.66914 2.04968 2.40968 2.57292 3.37487 3.70430 3.74260 3.76778 3.87213 3.97326 4.03219 4.24000 4.26331 4.36222 4.43177 4.45637 4.56469 4.59564 4.68519 4.76880 4.80079 4.82373 4.95292 4.98160 4.99550 5.06058 5.15144 5.23183 5.37875 5.45611 5.51009 5.53835 5.59531 5.74272 5.83166 6.05455 6.27966 6.61413 7.30548 7.33247 8.11909 8.33532 9.29213 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.043919 B = 0.002310 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.389314 B =12119.475458 C =12223.630374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.146 4.146 3 C -0.110 4.110 4 C -0.119 4.119 5 C -0.143 4.143 6 C -0.108 4.108 7 C 0.508 3.492 8 O -0.592 6.592 9 N -0.715 5.715 10 C 0.137 3.863 11 C -0.094 4.094 12 C -0.153 4.153 13 C 0.143 3.857 14 N -0.731 5.731 15 C -0.243 4.243 16 H 0.080 0.920 17 C -0.082 4.082 18 N -0.973 5.973 19 Si 0.975 3.025 20 H -0.276 1.276 21 H -0.299 1.299 22 H -0.277 1.277 23 C -0.138 4.138 24 H 0.104 0.896 25 H 0.117 0.883 26 H 0.131 0.869 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.102 0.898 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.418 0.582 34 H 0.061 0.939 35 H 0.042 0.958 36 H 0.124 0.876 37 H 0.053 0.947 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.371 0.629 41 H 0.250 0.750 42 H 0.078 0.922 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.787 -0.350 11.093 28.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.110 4.110 4 C -0.175 4.175 5 C -0.161 4.161 6 C -0.147 4.147 7 C 0.296 3.704 8 O -0.473 6.473 9 N -0.367 5.367 10 C 0.013 3.987 11 C -0.113 4.113 12 C -0.194 4.194 13 C 0.033 3.967 14 N -0.368 5.368 15 C -0.375 4.375 16 H 0.098 0.902 17 C -0.274 4.274 18 N -0.623 5.623 19 Si 0.804 3.196 20 H -0.202 1.202 21 H -0.225 1.225 22 H -0.203 1.203 23 C -0.178 4.178 24 H 0.122 0.878 25 H 0.135 0.865 26 H 0.149 0.851 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.120 0.880 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.255 0.745 34 H 0.080 0.920 35 H 0.061 0.939 36 H 0.142 0.858 37 H 0.072 0.928 38 H 0.089 0.911 39 H 0.100 0.900 40 H 0.203 0.797 41 H 0.059 0.941 42 H 0.097 0.903 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -26.640 0.217 10.699 28.709 hybrid contribution 1.451 -0.043 -0.065 1.453 sum -25.189 0.174 10.634 27.342 Atomic orbital electron populations 1.24674 0.95551 1.03079 0.97721 1.22113 0.95893 0.96200 1.02151 1.20834 0.93770 0.95497 1.00943 1.20843 1.00541 0.93857 1.02284 1.22800 0.94558 0.97912 1.00867 1.20838 0.99079 0.98816 0.95944 1.21237 0.80016 0.83057 0.86041 1.90687 1.67883 1.29052 1.59635 1.45933 1.43552 1.16109 1.31088 1.21183 0.92405 0.97211 0.87878 1.22463 0.94647 0.97481 0.96680 1.23740 0.96014 1.00697 0.98901 1.21999 0.82716 0.97249 0.94692 1.42639 1.01611 1.13375 1.79165 1.19710 0.86918 0.95093 1.35746 0.90205 1.25634 1.00272 0.98315 1.03151 1.69828 1.19989 1.18456 1.54074 0.85185 0.78355 0.77967 0.78109 1.20220 1.22503 1.20297 1.23334 0.96634 1.00619 0.97211 0.87794 0.86501 0.85133 0.91520 0.90403 0.91601 0.87996 0.85612 0.85610 0.74530 0.92033 0.93943 0.85843 0.92832 0.91115 0.90011 0.79730 0.94138 0.90298 0.91733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.82 14.07 66.64 0.94 -0.88 16 2 C -0.15 -1.88 9.20 23.42 0.22 -1.66 16 3 C -0.11 -1.81 5.98 -18.71 -0.11 -1.93 16 4 C -0.12 -1.67 9.38 71.24 0.67 -1.00 16 5 C -0.14 -2.69 8.43 24.51 0.21 -2.48 16 6 C -0.11 -1.62 5.92 29.10 0.17 -1.45 16 7 C 0.51 11.94 7.82 87.66 0.69 12.62 16 8 O -0.59 -20.06 16.03 -3.00 -0.05 -20.11 16 9 N -0.71 -14.19 5.56 -463.06 -2.57 -16.77 16 10 C 0.14 3.45 5.50 86.38 0.48 3.93 16 11 C -0.09 -2.24 3.75 -10.27 -0.04 -2.28 16 12 C -0.15 -4.76 7.45 31.18 0.23 -4.53 16 13 C 0.14 5.35 4.48 45.58 0.20 5.55 16 14 N -0.73 -36.90 5.41 -320.16 -1.73 -38.63 16 15 C -0.24 -13.43 9.97 84.03 0.84 -12.59 16 16 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 17 C -0.08 -4.73 5.50 84.86 0.47 -4.27 16 18 N -0.97 -60.46 13.06 21.65 0.28 -60.18 16 19 Si 0.97 46.17 29.55 68.60 2.03 48.20 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 21 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 22 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 23 C -0.14 -4.23 7.40 31.12 0.23 -4.00 16 24 H 0.10 1.00 6.31 -2.91 -0.02 0.98 16 25 H 0.12 0.83 8.06 -2.91 -0.02 0.81 16 26 H 0.13 1.23 6.00 -2.91 -0.02 1.22 16 27 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 28 H 0.08 0.84 6.67 -2.39 -0.02 0.82 16 29 H 0.07 0.90 8.06 -2.39 -0.02 0.88 16 30 H 0.10 2.22 8.04 -2.91 -0.02 2.20 16 31 H 0.13 1.26 5.41 -2.39 -0.01 1.25 16 32 H 0.13 1.31 8.14 -2.39 -0.02 1.30 16 33 H 0.42 5.33 8.47 -92.71 -0.79 4.54 16 34 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.04 1.31 7.87 -2.38 -0.02 1.29 16 36 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.05 1.95 7.92 -2.38 -0.02 1.93 16 38 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.08 2.94 8.10 -2.39 -0.02 2.92 16 40 H 0.37 20.47 7.92 -92.71 -0.73 19.73 16 41 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 42 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.06 2.20 8.08 -2.39 -0.02 2.18 16 Total: -1.00 -73.04 357.67 2.62 -70.42 By element: Atomic # 1 Polarization: 32.54 SS G_CDS: -0.52 Total: 32.02 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: 5.18 Total: -14.96 kcal Atomic # 7 Polarization: -111.55 SS G_CDS: -4.02 Total: -115.57 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.05 Total: -20.11 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -73.04 2.62 -70.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100581334.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.234 kcal (2) G-P(sol) polarization free energy of solvation -73.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds