Wall clock time and date at job start Tue Mar 31 2020 00:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50707 * 109.47351 * 2 1 4 4 C 1.50706 * 119.99644 * 274.99877 * 3 2 1 5 5 C 1.32993 * 120.00389 * 94.99691 * 3 2 1 6 6 C 1.47097 * 119.99988 * 173.19788 * 5 3 2 7 7 O 1.21615 * 120.00157 * 353.99551 * 6 5 3 8 8 N 1.34777 * 119.99666 * 173.98578 * 6 5 3 9 9 C 1.46505 * 120.00045 * 180.02562 * 8 6 5 10 10 H 1.09002 * 110.55477 * 39.89048 * 9 8 6 11 11 C 1.55872 * 111.23973 * 162.49864 * 9 8 6 12 12 C 1.55847 * 102.96943 * 117.95363 * 11 9 8 13 13 H 1.09000 * 115.55657 * 159.69128 * 12 11 9 14 14 C 1.55849 * 105.74129 * 288.86890 * 12 11 9 15 15 C 1.55871 * 103.52823 * 72.61508 * 14 12 11 16 16 C 1.55836 * 102.97300 * 359.11939 * 15 14 12 17 17 H 1.09008 * 115.56292 * 159.68949 * 16 15 14 18 18 N 1.50237 * 101.05513 * 33.81668 * 16 15 14 19 19 C 1.36939 * 130.84344 * 125.29077 * 18 16 15 20 20 H 1.07994 * 119.99742 * 0.02562 * 19 18 16 21 21 C 1.38806 * 119.99911 * 180.02562 * 19 18 16 22 22 N 1.31617 * 120.00462 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99955 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47317 * 89.99910 * 23 21 19 25 25 H 1.48499 * 109.47316 * 210.00015 * 23 21 19 26 26 H 1.48498 * 109.46866 * 329.99609 * 23 21 19 27 27 H 1.08992 * 109.47575 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47447 * 300.00346 * 1 2 3 29 29 H 1.09004 * 109.47127 * 60.00009 * 1 2 3 30 30 H 1.08998 * 109.47646 * 239.99780 * 2 1 3 31 31 H 1.09000 * 109.47465 * 119.99325 * 2 1 3 32 32 H 1.08989 * 109.47287 * 263.85014 * 4 3 2 33 33 H 1.09002 * 109.46844 * 23.85515 * 4 3 2 34 34 H 1.09003 * 109.46707 * 143.85227 * 4 3 2 35 35 H 1.08003 * 119.99831 * 353.20495 * 5 3 2 36 36 H 0.96997 * 120.00326 * 0.02562 * 8 6 5 37 37 H 1.09001 * 110.09435 * 359.97121 * 11 9 8 38 38 H 1.08994 * 111.60472 * 236.64325 * 11 9 8 39 39 H 1.09003 * 110.62602 * 190.50431 * 14 12 11 40 40 H 1.09006 * 110.62358 * 313.52274 * 14 12 11 41 41 H 1.09000 * 110.09485 * 241.13416 * 15 14 12 42 42 H 1.08995 * 111.59865 * 117.81003 * 15 14 12 43 43 H 0.97003 * 120.00768 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.1763 2.1691 -1.3002 5 6 2.3486 2.0144 1.1473 6 6 2.9785 3.3437 1.1386 7 8 3.3097 3.8527 0.0849 8 7 3.1883 3.9976 2.2983 9 6 3.8151 5.3217 2.2896 10 1 3.4415 5.9165 1.4560 11 6 3.5698 6.0714 3.6339 12 6 5.0111 6.2672 4.1934 13 1 5.1232 7.0539 4.9394 14 6 5.4901 4.8507 4.6327 15 6 5.7498 4.1183 3.2815 16 6 5.3668 5.1941 2.2211 17 1 5.7827 5.0418 1.2251 18 7 5.7905 6.4534 2.9225 19 6 6.6292 7.4606 2.5258 20 1 7.1062 7.4163 1.5579 21 6 6.8663 8.5383 3.3678 22 7 6.2854 8.5921 4.5477 23 14 8.0099 9.9126 2.8265 24 1 7.2277 10.9572 2.1177 25 1 8.6661 10.5087 4.0178 26 1 9.0449 9.3645 1.9136 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 3.2068 2.0985 -1.6479 33 1 1.5107 1.7337 -2.0456 34 1 1.9153 3.2164 -1.1475 35 1 2.1431 1.5204 2.0855 36 1 2.9244 3.5915 3.1387 37 1 2.9779 5.4505 4.3064 38 1 3.0859 7.0349 3.4737 39 1 6.4152 4.9186 5.2052 40 1 4.7160 4.3456 5.2104 41 1 5.1000 3.2472 3.1967 42 1 6.7956 3.8301 3.1758 43 1 6.4507 9.3454 5.1360 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001109238347.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:32 Heat of formation + Delta-G solvation = 17.244438 kcal Electronic energy + Delta-G solvation = -22293.881924 eV Core-core repulsion = 19147.418541 eV Total energy + Delta-G solvation = -3146.463383 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.96441 -38.51255 -36.13348 -33.81878 -32.28074 -31.04345 -29.29260 -29.00761 -28.15357 -26.89833 -24.43632 -23.90320 -21.59981 -20.81509 -19.48200 -18.79960 -18.20230 -17.01866 -16.68912 -15.39186 -15.13258 -14.78029 -14.59843 -14.45765 -14.11871 -13.85308 -13.45705 -13.09490 -12.73540 -12.33918 -12.21642 -12.13042 -11.73934 -11.63891 -11.53050 -11.44193 -11.10510 -10.99638 -10.86434 -10.84548 -10.75985 -10.17287 -10.05284 -9.75093 -9.38788 -9.33912 -9.17681 -9.07525 -8.90771 -8.36409 -6.87519 -5.69686 -3.07421 1.45339 3.41580 3.46601 3.48181 3.57079 3.63131 4.47926 4.61481 4.70237 5.03021 5.06023 5.23691 5.26457 5.37479 5.42409 5.54570 5.57789 5.64888 5.69788 5.84174 5.86055 5.90243 5.94147 5.98018 6.11994 6.13946 6.17060 6.36191 6.37693 6.50930 6.54182 6.60518 6.65530 6.76512 6.87255 7.02662 7.06351 7.32159 7.55988 7.79552 7.97705 8.20327 8.65118 9.13663 9.76189 10.57269 11.39952 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.034890 B = 0.003897 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.339003 B = 7183.083776 C = 7554.780133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 C -0.038 4.038 4 C -0.122 4.122 5 C -0.226 4.226 6 C 0.539 3.461 7 O -0.543 6.543 8 N -0.709 5.709 9 C 0.129 3.871 10 H 0.078 0.922 11 C -0.138 4.138 12 C 0.153 3.847 13 H 0.153 0.847 14 C -0.136 4.136 15 C -0.129 4.129 16 C 0.130 3.870 17 H 0.084 0.916 18 N -0.591 5.591 19 C -0.208 4.208 20 H 0.079 0.921 21 C -0.013 4.013 22 N -0.925 5.925 23 Si 0.916 3.084 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.050 0.950 34 H 0.090 0.910 35 H 0.122 0.878 36 H 0.394 0.606 37 H 0.052 0.948 38 H 0.066 0.934 39 H 0.053 0.947 40 H 0.045 0.955 41 H 0.050 0.950 42 H 0.051 0.949 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.756 -15.758 -3.703 19.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.133 4.133 3 C -0.040 4.040 4 C -0.178 4.178 5 C -0.247 4.247 6 C 0.328 3.672 7 O -0.423 6.423 8 N -0.359 5.359 9 C 0.023 3.977 10 H 0.096 0.904 11 C -0.178 4.178 12 C 0.046 3.954 13 H 0.170 0.830 14 C -0.175 4.175 15 C -0.169 4.169 16 C 0.021 3.979 17 H 0.102 0.898 18 N -0.312 5.312 19 C -0.336 4.336 20 H 0.096 0.904 21 C -0.208 4.208 22 N -0.573 5.573 23 Si 0.747 3.253 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.208 1.208 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.069 0.931 34 H 0.108 0.892 35 H 0.139 0.861 36 H 0.228 0.772 37 H 0.071 0.929 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.327 -15.056 -4.404 18.781 hybrid contribution 0.448 0.375 0.267 0.642 sum -9.878 -14.681 -4.137 18.172 Atomic orbital electron populations 1.21722 0.94421 1.01840 1.02447 1.20745 0.96513 0.92899 1.03158 1.22488 0.91244 0.94658 0.95588 1.21110 1.02185 1.01330 0.93137 1.22464 1.06869 0.96798 0.98616 1.18496 0.79291 0.85454 0.83974 1.90750 1.52098 1.68926 1.30560 1.46103 1.61648 1.19925 1.08233 1.22733 0.94518 0.81490 0.98985 0.90404 1.23429 1.00738 0.98791 0.94871 1.23742 0.86003 0.94712 0.90960 0.82978 1.23213 0.99790 0.98726 0.95795 1.23051 0.99575 0.97273 0.97001 1.23163 0.91724 0.87922 0.95106 0.89842 1.46498 1.51051 1.19215 1.14449 1.19069 1.17584 0.96607 1.00330 0.90351 1.24687 1.00974 0.98673 0.96509 1.69437 1.47136 1.31525 1.09211 0.86031 0.80113 0.81920 0.77220 1.21678 1.21714 1.20777 0.92295 0.92388 0.92372 0.90513 0.90824 0.90403 0.93142 0.89164 0.86054 0.77245 0.92930 0.91488 0.92778 0.93626 0.93125 0.93049 0.93617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.89 37.15 0.37 -0.65 16 2 C -0.10 -0.76 6.08 -27.88 -0.17 -0.93 16 3 C -0.04 -0.42 5.36 -101.16 -0.54 -0.96 16 4 C -0.12 -1.46 8.47 36.01 0.31 -1.16 16 5 C -0.23 -2.72 9.60 -37.81 -0.36 -3.08 16 6 C 0.54 8.49 7.59 -12.67 -0.10 8.40 16 7 O -0.54 -10.38 13.05 5.26 0.07 -10.31 16 8 N -0.71 -10.88 3.64 -52.04 -0.19 -11.07 16 9 C 0.13 2.47 3.02 -64.88 -0.20 2.28 16 10 H 0.08 1.68 7.79 -51.93 -0.40 1.27 16 11 C -0.14 -2.68 6.33 -23.68 -0.15 -2.83 16 12 C 0.15 3.48 4.67 -62.80 -0.29 3.19 16 13 H 0.15 3.96 5.52 -51.93 -0.29 3.67 16 14 C -0.14 -2.67 6.48 -23.68 -0.15 -2.83 16 15 C -0.13 -2.48 6.42 -23.68 -0.15 -2.63 16 16 C 0.13 2.81 5.27 -62.81 -0.33 2.48 16 17 H 0.08 1.90 8.14 -51.92 -0.42 1.48 16 18 N -0.59 -15.02 2.97 -145.82 -0.43 -15.45 16 19 C -0.21 -5.82 10.59 -15.06 -0.16 -5.98 16 20 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 21 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 22 N -0.92 -26.46 10.46 55.49 0.58 -25.88 16 23 Si 0.92 22.27 29.55 -169.99 -5.02 17.25 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.53 8.03 -51.93 -0.42 0.11 16 32 H 0.08 1.01 8.03 -51.94 -0.42 0.59 16 33 H 0.05 0.49 8.09 -51.93 -0.42 0.07 16 34 H 0.09 1.31 6.15 -51.93 -0.32 0.99 16 35 H 0.12 1.15 8.06 -52.48 -0.42 0.72 16 36 H 0.39 4.98 8.14 -40.82 -0.33 4.65 16 37 H 0.05 0.85 7.39 -51.93 -0.38 0.47 16 38 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 39 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 40 H 0.05 0.76 7.85 -51.93 -0.41 0.35 16 41 H 0.05 0.84 6.62 -51.93 -0.34 0.50 16 42 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 339.21 15.07 5.11 5.11 Total: -1.00 -30.61 339.21 -9.00 -39.61 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -7.08 Total: 5.93 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: -2.03 Total: -5.18 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: -0.04 Total: -52.40 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.07 Total: -10.31 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.61 -9.00 -39.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109238347.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.851 kcal (2) G-P(sol) polarization free energy of solvation -30.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds