Wall clock time and date at job start Tue Mar 31 2020 00:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50707 * 109.47351 * 2 1 4 4 C 1.50706 * 119.99644 * 274.99877 * 3 2 1 5 5 C 1.32993 * 120.00389 * 94.99691 * 3 2 1 6 6 C 1.47097 * 119.99988 * 173.19788 * 5 3 2 7 7 O 1.21615 * 120.00157 * 353.99551 * 6 5 3 8 8 N 1.34777 * 119.99666 * 173.98578 * 6 5 3 9 9 C 1.46505 * 120.00045 * 180.02562 * 8 6 5 10 10 H 1.09002 * 110.55477 * 39.89048 * 9 8 6 11 11 C 1.55872 * 111.23973 * 162.49864 * 9 8 6 12 12 C 1.55847 * 102.96943 * 117.95363 * 11 9 8 13 13 H 1.09000 * 115.55657 * 159.69128 * 12 11 9 14 14 C 1.55849 * 105.74129 * 288.86890 * 12 11 9 15 15 C 1.55871 * 103.52823 * 72.61508 * 14 12 11 16 16 C 1.55836 * 102.97300 * 359.11939 * 15 14 12 17 17 H 1.09008 * 115.56292 * 159.68949 * 16 15 14 18 18 N 1.50237 * 101.05513 * 33.81668 * 16 15 14 19 19 C 1.36939 * 130.84344 * 125.29077 * 18 16 15 20 20 H 1.07994 * 119.99742 * 0.02562 * 19 18 16 21 21 C 1.38806 * 119.99911 * 180.02562 * 19 18 16 22 22 N 1.31617 * 120.00462 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99955 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47317 * 89.99910 * 23 21 19 25 25 H 1.48499 * 109.47316 * 210.00015 * 23 21 19 26 26 H 1.48498 * 109.46866 * 329.99609 * 23 21 19 27 27 H 1.08992 * 109.47575 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47447 * 300.00346 * 1 2 3 29 29 H 1.09004 * 109.47127 * 60.00009 * 1 2 3 30 30 H 1.08998 * 109.47646 * 239.99780 * 2 1 3 31 31 H 1.09000 * 109.47465 * 119.99325 * 2 1 3 32 32 H 1.08989 * 109.47287 * 263.85014 * 4 3 2 33 33 H 1.09002 * 109.46844 * 23.85515 * 4 3 2 34 34 H 1.09003 * 109.46707 * 143.85227 * 4 3 2 35 35 H 1.08003 * 119.99831 * 353.20495 * 5 3 2 36 36 H 0.96997 * 120.00326 * 0.02562 * 8 6 5 37 37 H 1.09001 * 110.09435 * 359.97121 * 11 9 8 38 38 H 1.08994 * 111.60472 * 236.64325 * 11 9 8 39 39 H 1.09003 * 110.62602 * 190.50431 * 14 12 11 40 40 H 1.09006 * 110.62358 * 313.52274 * 14 12 11 41 41 H 1.09000 * 110.09485 * 241.13416 * 15 14 12 42 42 H 1.08995 * 111.59865 * 117.81003 * 15 14 12 43 43 H 0.97003 * 120.00768 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.1763 2.1691 -1.3002 5 6 2.3486 2.0144 1.1473 6 6 2.9785 3.3437 1.1386 7 8 3.3097 3.8527 0.0849 8 7 3.1883 3.9976 2.2983 9 6 3.8151 5.3217 2.2896 10 1 3.4415 5.9165 1.4560 11 6 3.5698 6.0714 3.6339 12 6 5.0111 6.2672 4.1934 13 1 5.1232 7.0539 4.9394 14 6 5.4901 4.8507 4.6327 15 6 5.7498 4.1183 3.2815 16 6 5.3668 5.1941 2.2211 17 1 5.7827 5.0418 1.2251 18 7 5.7905 6.4534 2.9225 19 6 6.6292 7.4606 2.5258 20 1 7.1062 7.4163 1.5579 21 6 6.8663 8.5383 3.3678 22 7 6.2854 8.5921 4.5477 23 14 8.0099 9.9126 2.8265 24 1 7.2277 10.9572 2.1177 25 1 8.6661 10.5087 4.0178 26 1 9.0449 9.3645 1.9136 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 3.2068 2.0985 -1.6479 33 1 1.5107 1.7337 -2.0456 34 1 1.9153 3.2164 -1.1475 35 1 2.1431 1.5204 2.0855 36 1 2.9244 3.5915 3.1387 37 1 2.9779 5.4505 4.3064 38 1 3.0859 7.0349 3.4737 39 1 6.4152 4.9186 5.2052 40 1 4.7160 4.3456 5.2104 41 1 5.1000 3.2472 3.1967 42 1 6.7956 3.8301 3.1758 43 1 6.4507 9.3454 5.1360 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001109238347.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:32 Heat of formation + Delta-G solvation = -0.385321 kcal Electronic energy + Delta-G solvation = -22294.646408 eV Core-core repulsion = 19147.418541 eV Total energy + Delta-G solvation = -3147.227867 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.41670 -39.95291 -37.03777 -35.37488 -34.18406 -31.80847 -30.97050 -30.76001 -29.57638 -28.18964 -26.13582 -24.90525 -23.00463 -22.19648 -21.22829 -20.23318 -19.50488 -18.76302 -17.93951 -16.84365 -16.61328 -16.51252 -15.90033 -15.53952 -15.42330 -15.24922 -14.53550 -14.24601 -14.05414 -13.75349 -13.51213 -13.39992 -13.16943 -13.00903 -12.87219 -12.78563 -12.59358 -12.55476 -12.33014 -12.20618 -11.99921 -11.90530 -11.70359 -11.50847 -11.14918 -11.04068 -10.80833 -10.51575 -10.13150 -9.75436 -8.85531 -7.80207 -5.19617 0.48902 1.45136 1.46624 1.54797 2.32499 2.40970 2.52191 3.33146 3.52166 3.79310 3.91200 3.96108 4.11667 4.16440 4.31761 4.37057 4.41182 4.48336 4.50300 4.61758 4.68187 4.70843 4.81364 4.82247 4.87516 4.97341 5.05832 5.06947 5.13393 5.14197 5.19465 5.26096 5.33788 5.41574 5.45610 5.57010 5.62803 5.70065 5.78852 5.88911 6.27142 6.78102 7.05071 7.44819 7.68333 8.54894 9.26622 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.034890 B = 0.003897 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.339003 B = 7183.083776 C = 7554.780133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 C -0.027 4.027 4 C -0.123 4.123 5 C -0.236 4.236 6 C 0.532 3.468 7 O -0.585 6.585 8 N -0.697 5.697 9 C 0.149 3.851 10 H 0.046 0.954 11 C -0.123 4.123 12 C 0.137 3.863 13 H 0.121 0.879 14 C -0.123 4.123 15 C -0.115 4.115 16 C 0.120 3.880 17 H 0.060 0.940 18 N -0.620 5.620 19 C -0.226 4.226 20 H 0.069 0.931 21 C -0.063 4.063 22 N -0.944 5.944 23 Si 0.976 3.024 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.277 1.277 27 H 0.075 0.925 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.157 0.843 36 H 0.413 0.587 37 H 0.096 0.904 38 H 0.047 0.953 39 H 0.034 0.966 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.040 0.960 43 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.234 -18.598 -3.079 22.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.129 4.129 3 C -0.029 4.029 4 C -0.179 4.179 5 C -0.256 4.256 6 C 0.324 3.676 7 O -0.468 6.468 8 N -0.349 5.349 9 C 0.041 3.959 10 H 0.064 0.936 11 C -0.163 4.163 12 C 0.031 3.969 13 H 0.138 0.862 14 C -0.163 4.163 15 C -0.154 4.154 16 C 0.012 3.988 17 H 0.078 0.922 18 N -0.342 5.342 19 C -0.355 4.355 20 H 0.087 0.913 21 C -0.256 4.256 22 N -0.593 5.593 23 Si 0.805 3.195 24 H -0.216 1.216 25 H -0.216 1.216 26 H -0.202 1.202 27 H 0.094 0.906 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.105 0.895 31 H 0.108 0.892 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.174 0.826 36 H 0.250 0.750 37 H 0.114 0.886 38 H 0.066 0.934 39 H 0.053 0.947 40 H 0.107 0.893 41 H 0.103 0.897 42 H 0.059 0.941 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -11.835 -17.949 -3.762 21.826 hybrid contribution 0.874 1.225 -0.038 1.505 sum -10.961 -16.724 -3.800 20.354 Atomic orbital electron populations 1.21725 0.93507 1.02901 1.02199 1.20808 0.97102 0.90485 1.04499 1.22799 0.89598 0.96033 0.94489 1.21050 1.01818 1.00133 0.94892 1.22480 1.07768 0.94819 1.00575 1.19223 0.78659 0.86585 0.83151 1.90752 1.53784 1.70190 1.32086 1.45846 1.61287 1.18357 1.09370 1.22154 0.92817 0.83153 0.97764 0.93586 1.23253 0.98966 0.98800 0.95295 1.23683 0.87794 0.95689 0.89721 0.86223 1.23107 1.00134 0.96962 0.96058 1.22948 0.99747 0.97331 0.95418 1.23278 0.93291 0.87621 0.94602 0.92182 1.46762 1.51418 1.19869 1.16164 1.19295 1.18161 0.97879 1.00167 0.91318 1.25409 1.02682 1.00667 0.96811 1.69664 1.48080 1.31786 1.09798 0.85104 0.78424 0.79200 0.76758 1.21590 1.21589 1.20202 0.90599 0.92505 0.92843 0.89505 0.89221 0.91827 0.90740 0.92058 0.82557 0.74982 0.88620 0.93411 0.94691 0.89287 0.89655 0.94062 0.94093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.89 71.98 0.71 -0.78 16 2 C -0.09 -1.10 6.08 29.85 0.18 -0.92 16 3 C -0.03 -0.53 5.36 -17.61 -0.09 -0.62 16 4 C -0.12 -2.86 8.47 71.24 0.60 -2.25 16 5 C -0.24 -4.94 9.60 23.43 0.22 -4.71 16 6 C 0.53 16.05 7.59 86.57 0.66 16.70 16 7 O -0.59 -22.75 13.05 -4.08 -0.05 -22.81 16 8 N -0.70 -19.82 3.64 -436.80 -1.59 -21.41 16 9 C 0.15 5.66 3.02 46.97 0.14 5.81 16 10 H 0.05 2.05 7.79 -2.39 -0.02 2.03 16 11 C -0.12 -4.65 6.33 32.57 0.21 -4.45 16 12 C 0.14 6.27 4.67 46.23 0.22 6.48 16 13 H 0.12 6.38 5.52 -2.39 -0.01 6.36 16 14 C -0.12 -4.62 6.48 32.57 0.21 -4.41 16 15 C -0.12 -4.21 6.42 32.57 0.21 -4.01 16 16 C 0.12 5.26 5.27 46.22 0.24 5.51 16 17 H 0.06 2.86 8.14 -2.38 -0.02 2.84 16 18 N -0.62 -32.39 2.97 -615.25 -1.83 -34.22 16 19 C -0.23 -13.15 10.59 84.03 0.89 -12.26 16 20 H 0.07 3.98 7.83 -2.91 -0.02 3.95 16 21 C -0.06 -3.62 5.50 84.86 0.47 -3.15 16 22 N -0.94 -55.53 10.46 21.65 0.23 -55.31 16 23 Si 0.98 46.94 29.55 68.60 2.03 48.97 16 24 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 25 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 26 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 27 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 29 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.09 0.85 8.03 -2.39 -0.02 0.83 16 32 H 0.06 1.66 8.03 -2.39 -0.02 1.64 16 33 H 0.07 1.32 8.09 -2.39 -0.02 1.30 16 34 H 0.06 1.81 6.15 -2.39 -0.01 1.79 16 35 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 36 H 0.41 8.65 8.14 -92.71 -0.76 7.89 16 37 H 0.10 2.75 7.39 -2.39 -0.02 2.73 16 38 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.09 2.56 7.85 -2.38 -0.02 2.55 16 41 H 0.09 2.52 6.62 -2.39 -0.02 2.51 16 42 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.25 14.24 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -70.48 339.21 3.89 -66.59 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: 0.24 Total: 21.25 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: 4.87 Total: -3.06 kcal Atomic # 7 Polarization: -107.75 SS G_CDS: -3.19 Total: -110.94 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.05 Total: -22.81 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.97 kcal Total: -70.48 3.89 -66.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109238347.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.203 kcal (2) G-P(sol) polarization free energy of solvation -70.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds