Wall clock time and date at job start Tue Mar 31 2020 00:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50706 * 109.46840 * 2 1 4 4 C 1.50696 * 119.99784 * 272.76044 * 3 2 1 5 5 C 1.32994 * 119.99797 * 92.76539 * 3 2 1 6 6 C 1.47093 * 120.00232 * 352.04517 * 5 3 2 7 7 O 1.21614 * 120.00343 * 353.63375 * 6 5 3 8 8 N 1.34777 * 120.00171 * 173.62305 * 6 5 3 9 9 C 1.46499 * 120.00452 * 179.97438 * 8 6 5 10 10 H 1.09005 * 110.55554 * 36.45259 * 9 8 6 11 11 C 1.54847 * 110.63116 * 273.55357 * 9 8 6 12 12 C 1.55846 * 103.44585 * 241.35094 * 11 9 8 13 13 H 1.08996 * 115.56201 * 159.56717 * 12 11 9 14 14 C 1.55851 * 105.06093 * 288.17216 * 12 11 9 15 15 C 1.54853 * 103.44569 * 72.57663 * 14 12 11 16 16 C 1.55850 * 103.44741 * 0.02562 * 15 14 12 17 17 H 1.08997 * 115.56704 * 159.56413 * 16 15 14 18 18 N 1.50233 * 101.75189 * 33.16766 * 12 11 9 19 19 C 1.36944 * 130.84027 * 125.82744 * 18 12 11 20 20 H 1.07990 * 119.99950 * 180.02562 * 19 18 12 21 21 C 1.38807 * 119.99525 * 0.02562 * 19 18 12 22 22 N 1.31623 * 120.00302 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00102 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47124 * 59.99674 * 23 21 19 25 25 H 1.48494 * 109.47557 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47135 * 300.00058 * 23 21 19 27 27 H 1.08999 * 109.47062 * 300.00059 * 1 2 3 28 28 H 1.09000 * 109.47050 * 60.00167 * 1 2 3 29 29 H 1.09000 * 109.46768 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47062 * 239.99941 * 2 1 3 31 31 H 1.09000 * 109.47050 * 119.99833 * 2 1 3 32 32 H 1.09003 * 109.47106 * 270.00083 * 4 3 2 33 33 H 1.08996 * 109.47443 * 30.00029 * 4 3 2 34 34 H 1.08993 * 109.47129 * 150.00331 * 4 3 2 35 35 H 1.08000 * 119.99540 * 172.05175 * 5 3 2 36 36 H 0.96997 * 119.99974 * 0.02562 * 8 6 5 37 37 H 1.08997 * 110.62870 * 122.86012 * 11 9 8 38 38 H 1.09005 * 110.75796 * 359.90297 * 11 9 8 39 39 H 1.09001 * 110.62847 * 314.08821 * 14 12 11 40 40 H 1.09001 * 110.76379 * 191.13168 * 14 12 11 41 41 H 1.09005 * 110.62505 * 118.48646 * 15 14 12 42 42 H 1.08999 * 110.62908 * 241.51028 * 15 14 12 43 43 H 0.97002 * 119.99839 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2242 2.1522 -1.3036 5 6 2.3064 2.0293 1.1504 6 6 1.9564 1.3842 2.4252 7 8 1.3144 0.3514 2.4280 8 7 2.3476 1.9376 3.5902 9 6 1.9986 1.2954 4.8599 10 1 2.0339 0.2103 4.7624 11 6 0.5990 1.7549 5.3372 12 6 0.8913 2.4499 6.7011 13 1 0.1251 3.1422 7.0500 14 6 1.2448 1.2894 7.6794 15 6 2.6528 0.8428 7.2146 16 6 2.9586 1.7947 6.0190 17 1 4.0119 1.8997 5.7588 18 7 2.2493 3.0443 6.4568 19 6 2.7016 4.3299 6.5916 20 1 3.7302 4.5670 6.3637 21 6 1.8379 5.3280 7.0211 22 7 0.5840 5.0390 7.2983 23 14 2.4545 7.0817 7.2043 24 1 2.9464 7.5731 5.8921 25 1 1.3450 7.9502 7.6732 26 1 3.5624 7.1162 8.1926 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.2383 1.9864 -1.6674 33 1 1.5095 1.7801 -2.0376 34 1 2.0637 3.2191 -1.1487 35 1 2.7857 2.9971 1.1486 36 1 2.8595 2.7614 3.5881 37 1 -0.0598 0.8978 5.4764 38 1 0.1631 2.4621 4.6314 39 1 0.5304 0.4722 7.5799 40 1 1.2758 1.6475 8.7085 41 1 3.3826 0.9821 8.0122 42 1 2.6367 -0.1959 6.8844 43 1 -0.0196 5.7366 7.5981 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110535800.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:39 Heat of formation + Delta-G solvation = 15.687121 kcal Electronic energy + Delta-G solvation = -22510.462581 eV Core-core repulsion = 19363.931667 eV Total energy + Delta-G solvation = -3146.530913 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.78204 -38.55595 -35.81533 -33.63265 -32.51815 -30.80100 -29.10691 -29.03163 -28.27353 -26.99175 -24.23163 -23.60290 -21.77299 -20.09138 -19.81786 -18.81139 -18.13672 -16.96259 -16.67631 -15.59293 -14.86208 -14.80913 -14.47444 -14.14180 -13.87618 -13.52717 -13.45466 -12.98919 -12.69035 -12.61852 -12.20323 -12.03080 -11.87159 -11.80548 -11.27604 -11.09357 -10.97003 -10.94298 -10.87910 -10.62575 -10.45236 -10.33395 -10.11978 -9.87859 -9.39277 -9.20144 -9.07558 -8.96492 -8.89011 -8.25557 -6.94348 -5.74182 -3.13565 1.55626 3.36167 3.40729 3.42300 3.67004 3.81389 4.40884 4.81199 4.92532 5.14040 5.27651 5.34193 5.38347 5.48528 5.53701 5.62049 5.67283 5.72868 5.75737 5.78751 5.90001 6.00717 6.07834 6.15175 6.18169 6.30775 6.35011 6.44200 6.48408 6.52322 6.57906 6.64906 6.73787 6.81995 6.86433 6.98441 7.21260 7.37742 7.47655 7.80265 8.14206 8.18644 8.77747 9.07336 9.70624 10.52209 11.34526 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018501 B = 0.005081 C = 0.004371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.031878 B = 5508.917961 C = 6404.681008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.102 4.102 3 C -0.042 4.042 4 C -0.124 4.124 5 C -0.223 4.223 6 C 0.539 3.461 7 O -0.549 6.549 8 N -0.703 5.703 9 C 0.128 3.872 10 H 0.077 0.923 11 C -0.141 4.141 12 C 0.154 3.846 13 H 0.151 0.849 14 C -0.139 4.139 15 C -0.129 4.129 16 C 0.127 3.873 17 H 0.088 0.912 18 N -0.589 5.589 19 C -0.215 4.215 20 H 0.078 0.922 21 C -0.009 4.009 22 N -0.919 5.919 23 Si 0.915 3.085 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.286 1.286 27 H 0.065 0.935 28 H 0.040 0.960 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.104 0.896 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.122 0.878 36 H 0.401 0.599 37 H 0.052 0.948 38 H 0.058 0.942 39 H 0.047 0.953 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.051 0.949 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.929 -7.320 -11.463 13.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.139 4.139 3 C -0.044 4.044 4 C -0.181 4.181 5 C -0.244 4.244 6 C 0.328 3.672 7 O -0.430 6.430 8 N -0.351 5.351 9 C 0.021 3.979 10 H 0.095 0.905 11 C -0.182 4.182 12 C 0.047 3.953 13 H 0.168 0.832 14 C -0.178 4.178 15 C -0.169 4.169 16 C 0.018 3.982 17 H 0.106 0.894 18 N -0.309 5.309 19 C -0.343 4.343 20 H 0.095 0.905 21 C -0.205 4.205 22 N -0.567 5.567 23 Si 0.746 3.254 24 H -0.213 1.213 25 H -0.216 1.216 26 H -0.213 1.213 27 H 0.084 0.916 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.122 0.878 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.140 0.860 36 H 0.235 0.765 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.439 -7.686 -11.337 13.912 hybrid contribution 0.617 1.432 0.106 1.563 sum 3.057 -6.254 -11.231 13.213 Atomic orbital electron populations 1.21517 0.94450 1.01362 1.01442 1.20975 0.97016 0.92677 1.03257 1.22468 0.91750 0.95862 0.94286 1.20957 1.02338 1.00114 0.94698 1.22499 1.07243 1.02192 0.92476 1.18504 0.79865 0.84442 0.84391 1.90665 1.40660 1.24179 1.87528 1.45935 1.55626 1.27927 1.05565 1.23124 0.96704 0.95632 0.82425 0.90537 1.23405 0.95027 0.99112 1.00629 1.23713 0.90322 0.91220 0.90046 0.83187 1.23063 0.95332 0.98847 1.00560 1.22890 0.98105 0.97396 0.98495 1.23625 0.94529 0.88098 0.91930 0.89391 1.46458 1.06465 1.02318 1.75642 1.18953 0.95037 0.82223 1.38128 0.90461 1.24702 0.95745 0.98052 1.02020 1.69465 1.03968 1.31746 1.51516 0.86144 0.77388 0.84094 0.77781 1.21304 1.21608 1.21280 0.91597 0.94063 0.92998 0.92715 0.87793 0.90843 0.91180 0.91241 0.85968 0.76470 0.92922 0.92354 0.93381 0.92705 0.92535 0.93024 0.93496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.68 9.45 37.16 0.35 -1.33 16 2 C -0.10 -1.31 5.31 -27.88 -0.15 -1.46 16 3 C -0.04 -0.51 5.36 -101.17 -0.54 -1.06 16 4 C -0.12 -1.13 10.04 36.00 0.36 -0.77 16 5 C -0.22 -3.11 9.62 -37.81 -0.36 -3.47 16 6 C 0.54 9.20 7.60 -12.67 -0.10 9.10 16 7 O -0.55 -10.41 11.40 5.27 0.06 -10.35 16 8 N -0.70 -12.36 5.11 -51.09 -0.26 -12.62 16 9 C 0.13 2.42 2.81 -63.87 -0.18 2.24 16 10 H 0.08 1.45 7.38 -51.93 -0.38 1.06 16 11 C -0.14 -2.95 6.23 -24.24 -0.15 -3.10 16 12 C 0.15 3.54 4.67 -62.80 -0.29 3.24 16 13 H 0.15 3.97 5.52 -51.93 -0.29 3.68 16 14 C -0.14 -2.77 6.44 -24.23 -0.16 -2.93 16 15 C -0.13 -2.36 6.43 -24.23 -0.16 -2.52 16 16 C 0.13 2.49 5.18 -61.25 -0.32 2.17 16 17 H 0.09 1.62 8.14 -51.93 -0.42 1.19 16 18 N -0.59 -14.00 3.00 -144.17 -0.43 -14.43 16 19 C -0.22 -5.64 10.59 -15.06 -0.16 -5.80 16 20 H 0.08 1.94 7.83 -52.49 -0.41 1.53 16 21 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 22 N -0.92 -25.86 10.47 55.49 0.58 -25.28 16 23 Si 0.92 21.39 29.55 -169.99 -5.02 16.37 16 24 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 26 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 27 H 0.06 1.03 6.91 -51.93 -0.36 0.67 16 28 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.10 1.59 5.57 -51.93 -0.29 1.30 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 34 H 0.07 0.60 8.07 -51.93 -0.42 0.18 16 35 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 36 H 0.40 6.86 8.61 -40.82 -0.35 6.50 16 37 H 0.05 1.03 7.80 -51.93 -0.41 0.63 16 38 H 0.06 1.33 7.98 -51.93 -0.41 0.92 16 39 H 0.05 0.86 7.80 -51.93 -0.40 0.46 16 40 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.05 0.83 7.83 -51.93 -0.41 0.43 16 43 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 338.87 15.07 5.11 5.11 Total: -1.00 -28.86 338.87 -8.99 -37.84 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -7.07 Total: 9.38 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -1.95 Total: -6.03 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: -0.11 Total: -52.33 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.06 Total: -10.35 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.86 -8.99 -37.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110535800.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.531 kcal (2) G-P(sol) polarization free energy of solvation -28.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds