Wall clock time and date at job start Tue Mar 31 2020 00:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50706 * 109.46840 * 2 1 4 4 C 1.50696 * 119.99784 * 272.76044 * 3 2 1 5 5 C 1.32994 * 119.99797 * 92.76539 * 3 2 1 6 6 C 1.47093 * 120.00232 * 352.04517 * 5 3 2 7 7 O 1.21614 * 120.00343 * 353.63375 * 6 5 3 8 8 N 1.34777 * 120.00171 * 173.62305 * 6 5 3 9 9 C 1.46499 * 120.00452 * 179.97438 * 8 6 5 10 10 H 1.09005 * 110.55554 * 36.45259 * 9 8 6 11 11 C 1.54847 * 110.63116 * 273.55357 * 9 8 6 12 12 C 1.55846 * 103.44585 * 241.35094 * 11 9 8 13 13 H 1.08996 * 115.56201 * 159.56717 * 12 11 9 14 14 C 1.55851 * 105.06093 * 288.17216 * 12 11 9 15 15 C 1.54853 * 103.44569 * 72.57663 * 14 12 11 16 16 C 1.55850 * 103.44741 * 0.02562 * 15 14 12 17 17 H 1.08997 * 115.56704 * 159.56413 * 16 15 14 18 18 N 1.50233 * 101.75189 * 33.16766 * 12 11 9 19 19 C 1.36944 * 130.84027 * 125.82744 * 18 12 11 20 20 H 1.07990 * 119.99950 * 180.02562 * 19 18 12 21 21 C 1.38807 * 119.99525 * 0.02562 * 19 18 12 22 22 N 1.31623 * 120.00302 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00102 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47124 * 59.99674 * 23 21 19 25 25 H 1.48494 * 109.47557 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47135 * 300.00058 * 23 21 19 27 27 H 1.08999 * 109.47062 * 300.00059 * 1 2 3 28 28 H 1.09000 * 109.47050 * 60.00167 * 1 2 3 29 29 H 1.09000 * 109.46768 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47062 * 239.99941 * 2 1 3 31 31 H 1.09000 * 109.47050 * 119.99833 * 2 1 3 32 32 H 1.09003 * 109.47106 * 270.00083 * 4 3 2 33 33 H 1.08996 * 109.47443 * 30.00029 * 4 3 2 34 34 H 1.08993 * 109.47129 * 150.00331 * 4 3 2 35 35 H 1.08000 * 119.99540 * 172.05175 * 5 3 2 36 36 H 0.96997 * 119.99974 * 0.02562 * 8 6 5 37 37 H 1.08997 * 110.62870 * 122.86012 * 11 9 8 38 38 H 1.09005 * 110.75796 * 359.90297 * 11 9 8 39 39 H 1.09001 * 110.62847 * 314.08821 * 14 12 11 40 40 H 1.09001 * 110.76379 * 191.13168 * 14 12 11 41 41 H 1.09005 * 110.62505 * 118.48646 * 15 14 12 42 42 H 1.08999 * 110.62908 * 241.51028 * 15 14 12 43 43 H 0.97002 * 119.99839 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2242 2.1522 -1.3036 5 6 2.3064 2.0293 1.1504 6 6 1.9564 1.3842 2.4252 7 8 1.3144 0.3514 2.4280 8 7 2.3476 1.9376 3.5902 9 6 1.9986 1.2954 4.8599 10 1 2.0339 0.2103 4.7624 11 6 0.5990 1.7549 5.3372 12 6 0.8913 2.4499 6.7011 13 1 0.1251 3.1422 7.0500 14 6 1.2448 1.2894 7.6794 15 6 2.6528 0.8428 7.2146 16 6 2.9586 1.7947 6.0190 17 1 4.0119 1.8997 5.7588 18 7 2.2493 3.0443 6.4568 19 6 2.7016 4.3299 6.5916 20 1 3.7302 4.5670 6.3637 21 6 1.8379 5.3280 7.0211 22 7 0.5840 5.0390 7.2983 23 14 2.4545 7.0817 7.2043 24 1 2.9464 7.5731 5.8921 25 1 1.3450 7.9502 7.6732 26 1 3.5624 7.1162 8.1926 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.2383 1.9864 -1.6674 33 1 1.5095 1.7801 -2.0376 34 1 2.0637 3.2191 -1.1487 35 1 2.7857 2.9971 1.1486 36 1 2.8595 2.7614 3.5881 37 1 -0.0598 0.8978 5.4764 38 1 0.1631 2.4621 4.6314 39 1 0.5304 0.4722 7.5799 40 1 1.2758 1.6475 8.7085 41 1 3.3826 0.9821 8.0122 42 1 2.6367 -0.1959 6.8844 43 1 -0.0196 5.7366 7.5981 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110535800.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:38 Heat of formation + Delta-G solvation = -0.363974 kcal Electronic energy + Delta-G solvation = -22511.158608 eV Core-core repulsion = 19363.931667 eV Total energy + Delta-G solvation = -3147.226941 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.22956 -40.04257 -36.91063 -35.12723 -34.38766 -31.84425 -30.97760 -30.50412 -29.64349 -28.24941 -26.12126 -24.67252 -23.16629 -21.58832 -21.45645 -20.40422 -19.38114 -18.81480 -17.90351 -17.04418 -16.72101 -16.08088 -15.78030 -15.75700 -15.25539 -14.97215 -14.57754 -14.29777 -13.76826 -13.69895 -13.66518 -13.57524 -13.07731 -12.92779 -12.87323 -12.80450 -12.78012 -12.63606 -12.09070 -11.98272 -11.95469 -11.89631 -11.74362 -11.64684 -11.06692 -10.92521 -10.85131 -10.36628 -10.05572 -9.66406 -8.86262 -7.74968 -5.15296 0.48453 1.49398 1.51274 1.57247 2.39589 2.49938 2.51925 3.37101 3.46614 3.85450 3.90272 3.96389 4.12013 4.27499 4.28954 4.45954 4.48812 4.51823 4.56001 4.64392 4.68019 4.72508 4.73834 4.84242 4.85467 4.91526 5.01769 5.09490 5.10074 5.17992 5.19555 5.30908 5.38173 5.41840 5.52549 5.56735 5.64590 5.76443 5.83093 5.90790 6.27738 6.79218 7.06304 7.44076 7.73323 8.59568 9.32097 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018501 B = 0.005081 C = 0.004371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.031878 B = 5508.917961 C = 6404.681008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.106 4.106 3 C -0.023 4.023 4 C -0.123 4.123 5 C -0.250 4.250 6 C 0.533 3.467 7 O -0.572 6.572 8 N -0.706 5.706 9 C 0.141 3.859 10 H 0.084 0.916 11 C -0.131 4.131 12 C 0.139 3.861 13 H 0.113 0.887 14 C -0.132 4.132 15 C -0.120 4.120 16 C 0.129 3.871 17 H 0.104 0.896 18 N -0.608 5.608 19 C -0.216 4.216 20 H 0.086 0.914 21 C -0.068 4.068 22 N -0.949 5.949 23 Si 0.975 3.025 24 H -0.278 1.278 25 H -0.301 1.301 26 H -0.281 1.281 27 H 0.032 0.968 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.138 0.862 36 H 0.403 0.597 37 H 0.062 0.938 38 H 0.028 0.972 39 H 0.069 0.931 40 H 0.038 0.962 41 H 0.059 0.941 42 H 0.081 0.919 43 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.475 -8.141 -13.450 16.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.143 4.143 3 C -0.025 4.025 4 C -0.179 4.179 5 C -0.270 4.270 6 C 0.325 3.675 7 O -0.456 6.456 8 N -0.354 5.354 9 C 0.034 3.966 10 H 0.101 0.899 11 C -0.171 4.171 12 C 0.033 3.967 13 H 0.130 0.870 14 C -0.171 4.171 15 C -0.160 4.160 16 C 0.021 3.979 17 H 0.122 0.878 18 N -0.329 5.329 19 C -0.345 4.345 20 H 0.104 0.896 21 C -0.260 4.260 22 N -0.599 5.599 23 Si 0.805 3.195 24 H -0.205 1.205 25 H -0.227 1.227 26 H -0.207 1.207 27 H 0.051 0.949 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.112 0.888 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.156 0.844 36 H 0.237 0.763 37 H 0.081 0.919 38 H 0.047 0.953 39 H 0.088 0.912 40 H 0.057 0.943 41 H 0.078 0.922 42 H 0.100 0.900 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 4.016 -8.532 -13.343 16.339 hybrid contribution 0.107 1.592 0.640 1.720 sum 4.123 -6.939 -12.703 15.051 Atomic orbital electron populations 1.21464 0.94568 1.01612 1.00745 1.20972 0.96856 0.93142 1.03282 1.22850 0.88848 0.95463 0.95351 1.21043 1.03977 1.00019 0.92888 1.22476 1.09889 1.03288 0.91378 1.19055 0.79181 0.84145 0.85160 1.90660 1.41670 1.25280 1.87941 1.45924 1.55981 1.28091 1.05427 1.22895 0.94944 0.95867 0.82913 0.89856 1.23261 0.96533 0.98475 0.98869 1.23543 0.89605 0.91759 0.91810 0.86959 1.22957 0.97196 0.98227 0.98729 1.22845 0.96669 0.98601 0.97844 1.23833 0.95141 0.86484 0.92435 0.87802 1.46639 1.07377 1.02849 1.76034 1.19333 0.95295 0.83446 1.36442 0.89641 1.25449 0.96045 1.01491 1.03004 1.69732 1.04951 1.32029 1.53168 0.85185 0.76449 0.80003 0.77863 1.20465 1.22736 1.20735 0.94903 0.91995 0.92387 0.89966 0.90456 0.88782 0.89658 0.90646 0.84399 0.76268 0.91901 0.95264 0.91245 0.94333 0.92191 0.90029 0.94542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 9.45 71.99 0.68 -2.41 16 2 C -0.11 -2.51 5.31 29.85 0.16 -2.35 16 3 C -0.02 -0.52 5.36 -17.62 -0.09 -0.61 16 4 C -0.12 -1.78 10.04 71.23 0.72 -1.07 16 5 C -0.25 -6.64 9.62 23.43 0.23 -6.41 16 6 C 0.53 18.05 7.60 86.57 0.66 18.71 16 7 O -0.57 -21.72 11.40 -4.07 -0.05 -21.77 16 8 N -0.71 -24.58 5.11 -433.79 -2.22 -26.79 16 9 C 0.14 5.21 2.81 47.62 0.13 5.35 16 10 H 0.08 3.01 7.38 -2.38 -0.02 2.99 16 11 C -0.13 -5.53 6.23 32.21 0.20 -5.33 16 12 C 0.14 6.55 4.67 46.23 0.22 6.77 16 13 H 0.11 6.24 5.52 -2.39 -0.01 6.23 16 14 C -0.13 -5.20 6.44 32.21 0.21 -4.99 16 15 C -0.12 -4.14 6.43 32.21 0.21 -3.93 16 16 C 0.13 4.85 5.18 47.25 0.24 5.10 16 17 H 0.10 3.59 8.14 -2.39 -0.02 3.57 16 18 N -0.61 -29.00 3.00 -610.05 -1.83 -30.83 16 19 C -0.22 -11.36 10.59 84.03 0.89 -10.47 16 20 H 0.09 4.23 7.83 -2.92 -0.02 4.21 16 21 C -0.07 -3.69 5.50 84.86 0.47 -3.22 16 22 N -0.95 -55.40 10.47 21.65 0.23 -55.17 16 23 Si 0.98 44.60 29.55 68.60 2.03 46.62 16 24 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 25 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 26 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 27 H 0.03 1.01 6.91 -2.39 -0.02 0.99 16 28 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.08 2.31 5.57 -2.39 -0.01 2.29 16 32 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.08 1.02 8.12 -2.39 -0.02 1.00 16 34 H 0.07 1.05 8.07 -2.39 -0.02 1.03 16 35 H 0.14 3.15 8.06 -2.91 -0.02 3.13 16 36 H 0.40 13.62 8.61 -92.71 -0.80 12.82 16 37 H 0.06 2.47 7.80 -2.39 -0.02 2.45 16 38 H 0.03 1.37 7.98 -2.38 -0.02 1.35 16 39 H 0.07 2.40 7.80 -2.39 -0.02 2.39 16 40 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 42 H 0.08 2.36 7.83 -2.39 -0.02 2.34 16 43 H 0.24 14.12 8.31 -92.71 -0.77 13.35 16 Total: -1.00 -63.99 338.87 3.26 -60.73 By element: Atomic # 1 Polarization: 31.90 SS G_CDS: 0.20 Total: 32.09 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: 4.91 Total: -4.88 kcal Atomic # 7 Polarization: -108.97 SS G_CDS: -3.82 Total: -112.79 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.05 Total: -21.77 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.62 kcal Total: -63.99 3.26 -60.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110535800.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.366 kcal (2) G-P(sol) polarization free energy of solvation -63.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds