Wall clock time and date at job start Tue Mar 31 2020 00:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.50700 * 119.99992 * 2 1 4 4 C 1.32998 * 120.00150 * 179.97438 * 2 1 3 5 5 C 1.47105 * 119.99645 * 5.81471 * 4 2 1 6 6 O 1.21614 * 120.00012 * 5.38231 * 5 4 2 7 7 N 1.34773 * 119.99898 * 185.37875 * 5 4 2 8 8 C 1.46496 * 120.00147 * 180.02562 * 7 5 4 9 9 C 1.56374 * 112.70595 * 298.48073 * 8 7 5 10 10 C 1.54832 * 104.40281 * 262.03204 * 9 8 7 11 11 C 1.54835 * 102.73182 * 321.29997 * 10 9 8 12 12 C 1.54144 * 104.34747 * 38.22630 * 11 10 9 13 13 H 1.08996 * 111.89881 * 99.85275 * 12 11 10 14 14 C 1.54468 * 108.79643 * 224.04602 * 12 11 10 15 15 N 1.48334 * 104.30877 * 139.51888 * 14 12 11 16 16 C 1.36938 * 128.19901 * 137.96840 * 15 14 12 17 17 H 1.07999 * 120.00605 * 195.99261 * 16 15 14 18 18 C 1.38815 * 119.99607 * 15.99514 * 16 15 14 19 19 N 1.31622 * 120.00374 * 9.19334 * 18 16 15 20 20 Si 1.86804 * 119.99728 * 189.19376 * 18 16 15 21 21 H 1.48500 * 109.47282 * 90.00236 * 20 18 16 22 22 H 1.48503 * 109.46753 * 210.00060 * 20 18 16 23 23 H 1.48496 * 109.47373 * 329.99854 * 20 18 16 24 24 C 1.48344 * 103.60760 * 318.23394 * 15 14 12 25 25 H 1.08998 * 109.47673 * 234.82782 * 1 2 3 26 26 H 1.08998 * 109.47248 * 354.83248 * 1 2 3 27 27 H 1.09011 * 109.47060 * 114.82927 * 1 2 3 28 28 H 1.08999 * 109.47017 * 179.97438 * 3 2 1 29 29 H 1.08993 * 109.47054 * 299.99773 * 3 2 1 30 30 H 1.09001 * 109.47022 * 59.99983 * 3 2 1 31 31 H 1.07994 * 120.00239 * 185.81063 * 4 2 1 32 32 H 0.97001 * 119.99816 * 359.97438 * 7 5 4 33 33 H 1.09004 * 110.83475 * 143.09438 * 9 8 7 34 34 H 1.09011 * 110.13888 * 20.62110 * 9 8 7 35 35 H 1.08996 * 110.76097 * 202.98725 * 10 9 8 36 36 H 1.08999 * 110.75983 * 79.60989 * 10 9 8 37 37 H 1.08997 * 110.45648 * 279.50968 * 11 10 9 38 38 H 1.08994 * 110.45847 * 156.94421 * 11 10 9 39 39 H 1.08995 * 110.46629 * 20.81081 * 14 12 11 40 40 H 1.09000 * 110.57329 * 258.28262 * 14 12 11 41 41 H 0.96993 * 120.00096 * 179.97438 * 19 18 16 42 42 H 1.08995 * 110.46615 * 160.47263 * 24 15 14 43 43 H 1.08997 * 110.46034 * 283.06097 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 2.1720 -1.1518 0.0005 5 6 1.4421 -2.4225 -0.1280 6 8 0.2433 -2.4172 -0.3327 7 7 2.1019 -3.5926 -0.0189 8 6 1.3751 -4.8581 -0.1474 9 6 0.2759 -5.0371 0.9503 10 6 0.9469 -5.9258 2.0260 11 6 1.7662 -6.9288 1.1775 12 6 2.3117 -6.0844 0.0089 13 1 3.3482 -5.7886 0.1703 14 6 2.1363 -6.8793 -1.3039 15 7 1.7022 -5.8625 -2.2928 16 6 2.1087 -5.7177 -3.5924 17 1 1.9144 -4.7952 -4.1195 18 6 2.7705 -6.7565 -4.2325 19 7 2.8487 -7.9390 -3.6598 20 14 3.5502 -6.4763 -5.9068 21 1 4.9530 -6.0224 -5.7299 22 1 3.5340 -7.7447 -6.6788 23 1 2.7834 -5.4391 -6.6426 24 6 0.7284 -5.0357 -1.5388 25 1 -0.3634 -0.5919 0.8400 26 1 -0.3633 1.0235 0.0926 27 1 -0.3634 -0.4316 -0.9328 28 1 3.3321 1.1059 0.0005 29 1 1.9971 1.8766 -0.8900 30 1 1.9971 1.8767 0.8900 31 1 3.2477 -1.1542 0.0952 32 1 3.0581 -3.5968 0.1440 33 1 -0.6039 -5.5334 0.5406 34 1 0.0046 -4.0688 1.3711 35 1 0.1961 -6.4458 2.6208 36 1 1.6030 -5.3325 2.6630 37 1 1.1234 -7.7259 0.8040 38 1 2.5864 -7.3429 1.7637 39 1 1.3714 -7.6467 -1.1855 40 1 3.0815 -7.3285 -1.6088 41 1 3.3108 -8.6650 -4.1072 42 1 0.5942 -4.0684 -2.0229 43 1 -0.2259 -5.5552 -1.4520 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111577912.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:49 Heat of formation + Delta-G solvation = -21.278946 kcal Electronic energy + Delta-G solvation = -22771.271442 eV Core-core repulsion = 19623.137559 eV Total energy + Delta-G solvation = -3148.133882 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.46674 -39.66978 -36.39683 -36.05883 -34.60077 -33.43626 -30.91585 -29.80062 -28.62553 -28.37436 -26.24294 -26.14436 -23.24429 -21.97473 -21.28219 -20.22588 -19.41050 -18.69628 -17.68852 -17.16904 -16.79231 -16.28593 -15.69316 -15.60654 -15.25226 -15.16808 -14.98023 -14.43416 -14.21700 -14.00157 -13.41714 -13.29925 -13.21018 -13.12933 -12.82335 -12.79948 -12.66756 -12.47884 -12.30148 -12.25599 -12.00832 -11.81568 -11.72436 -11.61932 -11.44982 -11.27913 -10.77809 -10.42222 -10.11626 -9.73850 -8.86686 -7.91991 -5.28753 0.50018 1.42962 1.44533 1.53746 2.34989 2.45712 2.47350 3.26338 3.47545 3.54933 3.87409 3.89930 3.97608 4.02957 4.32292 4.38677 4.46307 4.52166 4.60331 4.60618 4.71315 4.72115 4.81481 4.84511 4.89262 4.95463 4.97748 5.05514 5.06789 5.15791 5.20995 5.22789 5.28318 5.40361 5.46795 5.56073 5.59592 5.64176 5.70388 5.85833 6.17654 6.77712 7.00417 7.45074 7.65431 8.47008 9.20337 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014886 B = 0.006026 C = 0.004644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.527605 B = 4645.571100 C = 6027.319233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.032 4.032 3 C -0.121 4.121 4 C -0.248 4.248 5 C 0.534 3.466 6 O -0.574 6.574 7 N -0.696 5.696 8 C 0.170 3.830 9 C -0.112 4.112 10 C -0.108 4.108 11 C -0.109 4.109 12 C -0.105 4.105 13 H 0.085 0.915 14 C 0.165 3.835 15 N -0.618 5.618 16 C -0.239 4.239 17 H 0.065 0.935 18 C -0.056 4.056 19 N -0.943 5.943 20 Si 0.977 3.023 21 H -0.281 1.281 22 H -0.290 1.290 23 H -0.275 1.275 24 C 0.132 3.868 25 H 0.062 0.938 26 H 0.075 0.925 27 H 0.059 0.941 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.146 0.854 32 H 0.407 0.593 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.059 0.941 38 H 0.086 0.914 39 H 0.004 0.996 40 H 0.057 0.943 41 H 0.251 0.749 42 H 0.030 0.970 43 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.948 13.310 13.782 19.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.034 4.034 3 C -0.177 4.177 4 C -0.269 4.269 5 C 0.326 3.674 6 O -0.456 6.456 7 N -0.346 5.346 8 C 0.081 3.919 9 C -0.151 4.151 10 C -0.146 4.146 11 C -0.147 4.147 12 C -0.126 4.126 13 H 0.103 0.897 14 C 0.039 3.961 15 N -0.342 5.342 16 C -0.368 4.368 17 H 0.083 0.917 18 C -0.250 4.250 19 N -0.590 5.590 20 Si 0.805 3.195 21 H -0.208 1.208 22 H -0.216 1.216 23 H -0.200 1.200 24 C 0.005 3.995 25 H 0.081 0.919 26 H 0.094 0.906 27 H 0.078 0.922 28 H 0.096 0.904 29 H 0.104 0.896 30 H 0.111 0.889 31 H 0.164 0.836 32 H 0.243 0.757 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.104 0.896 39 H 0.022 0.978 40 H 0.075 0.925 41 H 0.060 0.940 42 H 0.049 0.951 43 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 0.219 13.181 13.412 18.806 hybrid contribution 0.587 -0.476 -1.387 1.579 sum 0.806 12.704 12.025 17.512 Atomic orbital electron populations 1.20918 0.91807 1.01749 1.02492 1.22859 0.96558 0.95639 0.88321 1.21058 1.00008 0.92715 1.03953 1.22541 1.01082 0.90997 1.12235 1.19101 0.87147 0.85110 0.76081 1.90734 1.16178 1.88164 1.50519 1.45696 1.11994 1.04480 1.72453 1.21992 0.92556 0.83145 0.94190 1.22903 0.96576 1.00050 0.95531 1.22455 0.99079 0.96596 0.96435 1.22376 0.99929 0.97292 0.95095 1.23057 0.98573 0.94494 0.96469 0.89693 1.21680 0.98177 0.89970 0.86225 1.45378 1.46376 1.33779 1.08643 1.19222 1.31751 0.97948 0.87860 0.91709 1.25646 1.02832 0.94636 1.01867 1.70064 1.47408 1.01509 1.40059 0.85116 0.78489 0.76739 0.79194 1.20751 1.21644 1.19998 1.22087 0.91393 0.93761 0.92274 0.91917 0.90582 0.92199 0.90388 0.89597 0.88949 0.83588 0.75676 0.92182 0.91865 0.89868 0.90293 0.92211 0.89563 0.97839 0.92460 0.93998 0.95095 0.96467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.72 8.34 71.23 0.59 -2.12 16 2 C -0.03 -0.69 6.11 -17.62 -0.11 -0.80 16 3 C -0.12 -1.61 10.05 71.24 0.72 -0.89 16 4 C -0.25 -6.15 9.63 23.43 0.23 -5.93 16 5 C 0.53 17.64 6.83 86.57 0.59 18.23 16 6 O -0.57 -22.33 10.82 -4.08 -0.04 -22.38 16 7 N -0.70 -22.62 5.30 -415.76 -2.20 -24.82 16 8 C 0.17 6.26 0.93 5.99 0.01 6.27 16 9 C -0.11 -3.60 5.75 32.39 0.19 -3.41 16 10 C -0.11 -2.72 6.90 31.85 0.22 -2.50 16 11 C -0.11 -3.15 6.36 31.61 0.20 -2.95 16 12 C -0.11 -3.84 3.66 -9.19 -0.03 -3.88 16 13 H 0.08 2.88 7.74 -2.39 -0.02 2.87 16 14 C 0.17 8.11 5.49 86.53 0.48 8.59 16 15 N -0.62 -33.55 3.37 -686.87 -2.32 -35.87 16 16 C -0.24 -14.09 10.37 84.03 0.87 -13.22 16 17 H 0.07 3.81 7.85 -2.91 -0.02 3.79 16 18 C -0.06 -3.24 5.40 84.86 0.46 -2.78 16 19 N -0.94 -57.01 10.87 21.65 0.24 -56.78 16 20 Si 0.98 46.59 29.56 68.60 2.03 48.62 16 21 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 22 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 23 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 24 C 0.13 6.27 6.13 86.52 0.53 6.80 16 25 H 0.06 1.68 7.41 -2.39 -0.02 1.66 16 26 H 0.08 1.35 8.01 -2.39 -0.02 1.33 16 27 H 0.06 1.79 7.09 -2.38 -0.02 1.77 16 28 H 0.08 0.89 7.82 -2.39 -0.02 0.87 16 29 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.15 2.81 7.88 -2.91 -0.02 2.79 16 32 H 0.41 11.18 8.31 -92.71 -0.77 10.41 16 33 H 0.06 2.07 7.26 -2.39 -0.02 2.05 16 34 H 0.06 2.08 6.83 -2.38 -0.02 2.06 16 35 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.06 1.88 7.19 -2.39 -0.02 1.86 16 38 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.00 0.19 7.21 -2.39 -0.02 0.17 16 40 H 0.06 3.15 6.44 -2.39 -0.02 3.13 16 41 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 42 H 0.03 1.58 6.84 -2.39 -0.02 1.56 16 43 H 0.02 0.86 7.24 -2.39 -0.02 0.85 16 Total: -1.00 -71.50 333.31 2.86 -68.64 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: 0.23 Total: 21.18 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: 4.93 Total: 1.41 kcal Atomic # 7 Polarization: -113.18 SS G_CDS: -4.28 Total: -117.46 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.04 Total: -22.38 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -71.50 2.86 -68.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111577912.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.357 kcal (2) G-P(sol) polarization free energy of solvation -71.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds