Wall clock time and date at job start Mon Mar 30 2020 23:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50697 * 120.00215 * 2 1 4 4 C 1.52997 * 109.47466 * 124.99708 * 3 2 1 5 5 C 1.50701 * 109.47212 * 179.97438 * 4 3 2 6 6 O 1.21280 * 119.99781 * 0.02562 * 5 4 3 7 7 N 1.34780 * 119.99795 * 179.97438 * 5 4 3 8 8 C 1.46497 * 119.99566 * 180.02562 * 7 5 4 9 9 C 1.54180 * 111.61931 * 298.58738 * 8 7 5 10 10 C 1.56224 * 103.64999 * 260.33058 * 9 8 7 11 11 C 1.54845 * 103.17538 * 322.65783 * 10 9 8 12 12 C 1.54181 * 104.30101 * 37.76547 * 11 10 9 13 13 H 1.09006 * 112.25075 * 98.79090 * 12 11 10 14 14 C 1.53792 * 109.13058 * 223.08271 * 12 11 10 15 15 N 1.47225 * 106.36031 * 132.66964 * 14 12 11 16 16 C 1.36932 * 126.70306 * 148.74646 * 15 14 12 17 17 H 1.07999 * 120.00312 * 180.02562 * 16 15 14 18 18 C 1.38816 * 120.00071 * 0.02965 * 16 15 14 19 19 N 1.31622 * 119.99636 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00213 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47267 * 59.99511 * 20 18 16 22 22 H 1.48495 * 109.47258 * 179.97438 * 20 18 16 23 23 H 1.48509 * 109.47004 * 300.00072 * 20 18 16 24 24 C 1.47226 * 106.59245 * 328.76877 * 15 14 12 25 25 H 1.08006 * 119.99938 * 0.02562 * 1 2 3 26 26 H 1.07999 * 120.00549 * 179.97438 * 1 2 3 27 27 H 1.07997 * 119.99841 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.47120 * 4.99460 * 3 2 1 29 29 H 1.08998 * 109.46862 * 245.00263 * 3 2 1 30 30 H 1.09002 * 109.47153 * 59.99773 * 4 3 2 31 31 H 1.09001 * 109.46832 * 299.99964 * 4 3 2 32 32 H 0.96995 * 120.00011 * 0.02562 * 7 5 4 33 33 H 1.09002 * 110.46399 * 20.29881 * 9 8 7 34 34 H 1.08998 * 110.47157 * 142.88931 * 9 8 7 35 35 H 1.09001 * 110.86786 * 204.05069 * 10 9 8 36 36 H 1.09000 * 110.38856 * 81.04064 * 10 9 8 37 37 H 1.09001 * 110.47023 * 279.06379 * 11 10 9 38 38 H 1.09002 * 110.47128 * 156.46980 * 11 10 9 39 39 H 1.09006 * 110.07368 * 13.45203 * 14 12 11 40 40 H 1.08993 * 110.12945 * 251.92594 * 14 12 11 41 41 H 0.97003 * 119.99645 * 179.97438 * 19 18 16 42 42 H 1.08998 * 110.08056 * 272.00276 * 24 15 14 43 43 H 1.09004 * 110.11896 * 150.48650 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.7890 2.6379 1.1812 6 8 3.5704 3.4643 0.3208 7 7 4.7054 2.8870 2.1376 8 6 5.4379 4.1557 2.1375 9 6 6.2745 4.3284 0.8540 10 6 7.7174 3.9260 1.2975 11 6 7.8148 4.4904 2.7361 12 6 6.4137 4.2529 3.3341 13 1 6.3770 3.3595 3.9576 14 6 5.9790 5.5058 4.1128 15 7 4.6016 5.8024 3.6858 16 6 3.6165 6.3787 4.4423 17 1 2.6380 6.5472 4.0173 18 6 3.8754 6.7466 5.7555 19 7 5.0677 6.5410 6.2736 20 14 2.5317 7.5335 6.7873 21 1 1.3811 6.6012 6.8961 22 1 3.0585 7.8294 8.1438 23 1 2.0871 8.7952 6.1422 24 6 4.4902 5.3577 2.2867 25 1 -0.5400 0.9354 -0.0004 26 1 -0.5401 -0.9352 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3586 2.1316 0.0895 29 1 2.6213 1.4025 -0.9314 30 1 3.7399 0.5065 1.0922 31 1 2.4772 1.2357 2.1130 32 1 4.8799 2.2262 2.8259 33 1 5.8974 3.6800 0.0631 34 1 6.2665 5.3694 0.5309 35 1 8.4648 4.3856 0.6507 36 1 7.8253 2.8413 1.2999 37 1 8.0437 5.5559 2.7129 38 1 8.5696 3.9499 3.3074 39 1 6.6342 6.3428 3.8707 40 1 6.0044 5.3090 5.1845 41 1 5.2488 6.7984 7.1912 42 1 4.7938 6.1596 1.6138 43 1 3.4656 5.0555 2.0698 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111643985.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:57 Heat of formation + Delta-G solvation = -1.399663 kcal Electronic energy + Delta-G solvation = -22550.118533 eV Core-core repulsion = 19402.846681 eV Total energy + Delta-G solvation = -3147.271852 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.17430 -38.19515 -35.37481 -34.46235 -33.30788 -31.43451 -30.75360 -29.31420 -27.69628 -24.87417 -24.69577 -23.81157 -21.21326 -20.24854 -19.87341 -19.25663 -18.74292 -17.14593 -16.35679 -15.87149 -15.56521 -14.93795 -14.79493 -14.38211 -14.20612 -13.63625 -13.50147 -13.28406 -12.64336 -12.57585 -12.38352 -12.16364 -11.61904 -11.39183 -11.20351 -11.13244 -11.06560 -10.95488 -10.77105 -10.69016 -10.56812 -10.27017 -10.19074 -9.92615 -9.72769 -9.56688 -9.47062 -9.21826 -8.71251 -8.49442 -6.83526 -5.61989 -3.06446 2.14674 2.99353 3.41146 3.45266 3.46694 3.56616 4.49779 4.74723 4.85859 4.91584 5.04401 5.11271 5.22691 5.26217 5.34652 5.50074 5.57624 5.71364 5.75468 5.81971 5.87329 5.91318 5.93518 6.03242 6.08853 6.12989 6.19837 6.28662 6.45209 6.49286 6.50855 6.60229 6.66333 6.71682 6.80292 6.88684 7.23550 7.48281 7.63126 7.82347 7.94720 8.41668 8.62143 9.23572 9.84067 10.52184 11.38806 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013793 B = 0.005676 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.530062 B = 4931.528477 C = 6524.787595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.153 4.153 3 C -0.078 4.078 4 C -0.137 4.137 5 C 0.510 3.490 6 O -0.541 6.541 7 N -0.706 5.706 8 C 0.160 3.840 9 C -0.117 4.117 10 C -0.124 4.124 11 C -0.113 4.113 12 C -0.112 4.112 13 H 0.073 0.927 14 C 0.140 3.860 15 N -0.598 5.598 16 C -0.215 4.215 17 H 0.076 0.924 18 C -0.013 4.013 19 N -0.923 5.923 20 Si 0.915 3.085 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.286 1.286 24 C 0.136 3.864 25 H 0.097 0.903 26 H 0.095 0.905 27 H 0.107 0.893 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.396 0.604 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.011 0.989 40 H 0.123 0.877 41 H 0.252 0.748 42 H 0.025 0.975 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.021 -12.875 -9.305 15.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.171 4.171 3 C -0.116 4.116 4 C -0.177 4.177 5 C 0.296 3.704 6 O -0.418 6.418 7 N -0.356 5.356 8 C 0.073 3.927 9 C -0.156 4.156 10 C -0.161 4.161 11 C -0.151 4.151 12 C -0.132 4.132 13 H 0.092 0.908 14 C 0.014 3.986 15 N -0.322 5.322 16 C -0.343 4.343 17 H 0.094 0.906 18 C -0.208 4.208 19 N -0.573 5.573 20 Si 0.746 3.254 21 H -0.213 1.213 22 H -0.215 1.215 23 H -0.212 1.212 24 C 0.008 3.992 25 H 0.115 0.885 26 H 0.113 0.887 27 H 0.125 0.875 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.110 0.890 32 H 0.230 0.770 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.029 0.971 40 H 0.140 0.860 41 H 0.063 0.937 42 H 0.042 0.958 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.797 -12.145 -9.676 15.549 hybrid contribution -0.607 0.023 0.909 1.093 sum 0.189 -12.122 -8.768 14.962 Atomic orbital electron populations 1.23878 0.96038 1.01826 1.01503 1.22996 0.96087 0.98416 0.99611 1.20486 0.97884 0.95222 0.98010 1.21622 0.98955 0.96015 1.01089 1.20560 0.79622 0.88747 0.81482 1.90683 1.65480 1.48021 1.37635 1.46041 1.40362 1.19426 1.29811 1.21744 0.91994 0.84028 0.94918 1.22875 0.93946 1.01974 0.96758 1.22758 0.96706 0.99928 0.96745 1.22424 0.96442 1.01287 0.94949 1.22989 0.93050 1.01811 0.95394 0.90834 1.22073 0.84439 0.89917 1.02174 1.44582 1.09379 1.70800 1.07392 1.19064 0.91230 1.31177 0.92836 0.90611 1.24748 0.97053 1.01889 0.97089 1.69591 1.19743 1.53417 1.14526 0.86136 0.80701 0.79157 0.79444 1.21265 1.21543 1.21221 1.21677 0.97406 0.92347 0.87721 0.88467 0.88670 0.87497 0.90654 0.90325 0.89261 0.88972 0.76997 0.91192 0.91001 0.92142 0.92317 0.91094 0.92078 0.97078 0.86015 0.93686 0.95758 0.93384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.81 14.32 29.01 0.42 -1.40 16 2 C -0.15 -1.47 9.52 -36.03 -0.34 -1.81 16 3 C -0.08 -0.90 4.95 -27.89 -0.14 -1.04 16 4 C -0.14 -1.55 5.68 -27.88 -0.16 -1.71 16 5 C 0.51 7.97 6.81 -10.98 -0.07 7.89 16 6 O -0.54 -10.29 13.48 5.56 0.07 -10.22 16 7 N -0.71 -11.12 5.23 -45.83 -0.24 -11.36 16 8 C 0.16 2.92 0.94 -129.89 -0.12 2.80 16 9 C -0.12 -1.92 5.75 -24.38 -0.14 -2.06 16 10 C -0.12 -1.72 6.92 -24.03 -0.17 -1.89 16 11 C -0.11 -1.76 6.38 -25.14 -0.16 -1.92 16 12 C -0.11 -2.07 3.67 -88.69 -0.33 -2.39 16 13 H 0.07 1.28 7.69 -51.93 -0.40 0.89 16 14 C 0.14 3.34 5.77 -3.23 -0.02 3.32 16 15 N -0.60 -15.62 3.39 -171.10 -0.58 -16.20 16 16 C -0.21 -6.10 10.34 -15.06 -0.16 -6.25 16 17 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 18 C -0.01 -0.37 5.49 -17.43 -0.10 -0.46 16 19 N -0.92 -26.67 10.08 55.49 0.56 -26.11 16 20 Si 0.92 22.26 29.55 -169.99 -5.02 17.24 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 C 0.14 3.09 6.00 -3.23 -0.02 3.07 16 25 H 0.10 0.92 7.84 -52.48 -0.41 0.51 16 26 H 0.09 0.74 8.06 -52.49 -0.42 0.31 16 27 H 0.11 0.86 8.06 -52.49 -0.42 0.44 16 28 H 0.07 0.98 7.75 -51.93 -0.40 0.58 16 29 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 30 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.40 5.30 8.28 -40.82 -0.34 4.96 16 33 H 0.07 1.17 6.69 -51.93 -0.35 0.82 16 34 H 0.07 1.24 7.18 -51.93 -0.37 0.87 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.07 1.17 7.17 -51.93 -0.37 0.80 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.01 0.29 7.12 -51.93 -0.37 -0.08 16 40 H 0.12 3.28 5.44 -51.93 -0.28 2.99 16 41 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.02 0.58 7.13 -51.93 -0.37 0.21 16 43 H 0.05 1.16 6.73 -51.93 -0.35 0.81 16 LS Contribution 335.70 15.07 5.06 5.06 Total: -1.00 -31.35 335.70 -8.59 -39.95 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -6.94 Total: 5.48 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -1.50 Total: -3.84 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: -0.26 Total: -53.67 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.07 Total: -10.22 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.35 -8.59 -39.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111643985.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.549 kcal (2) G-P(sol) polarization free energy of solvation -31.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds