Wall clock time and date at job start Mon Mar 30 2020 23:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50697 * 120.00215 * 2 1 4 4 C 1.52997 * 109.47466 * 124.99708 * 3 2 1 5 5 C 1.50701 * 109.47212 * 179.97438 * 4 3 2 6 6 O 1.21280 * 119.99781 * 0.02562 * 5 4 3 7 7 N 1.34780 * 119.99795 * 179.97438 * 5 4 3 8 8 C 1.46497 * 119.99566 * 180.02562 * 7 5 4 9 9 C 1.54180 * 111.61931 * 298.58738 * 8 7 5 10 10 C 1.56224 * 103.64999 * 260.33058 * 9 8 7 11 11 C 1.54845 * 103.17538 * 322.65783 * 10 9 8 12 12 C 1.54181 * 104.30101 * 37.76547 * 11 10 9 13 13 H 1.09006 * 112.25075 * 98.79090 * 12 11 10 14 14 C 1.53792 * 109.13058 * 223.08271 * 12 11 10 15 15 N 1.47225 * 106.36031 * 132.66964 * 14 12 11 16 16 C 1.36932 * 126.70306 * 148.74646 * 15 14 12 17 17 H 1.07999 * 120.00312 * 180.02562 * 16 15 14 18 18 C 1.38816 * 120.00071 * 0.02965 * 16 15 14 19 19 N 1.31622 * 119.99636 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00213 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47267 * 59.99511 * 20 18 16 22 22 H 1.48495 * 109.47258 * 179.97438 * 20 18 16 23 23 H 1.48509 * 109.47004 * 300.00072 * 20 18 16 24 24 C 1.47226 * 106.59245 * 328.76877 * 15 14 12 25 25 H 1.08006 * 119.99938 * 0.02562 * 1 2 3 26 26 H 1.07999 * 120.00549 * 179.97438 * 1 2 3 27 27 H 1.07997 * 119.99841 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.47120 * 4.99460 * 3 2 1 29 29 H 1.08998 * 109.46862 * 245.00263 * 3 2 1 30 30 H 1.09002 * 109.47153 * 59.99773 * 4 3 2 31 31 H 1.09001 * 109.46832 * 299.99964 * 4 3 2 32 32 H 0.96995 * 120.00011 * 0.02562 * 7 5 4 33 33 H 1.09002 * 110.46399 * 20.29881 * 9 8 7 34 34 H 1.08998 * 110.47157 * 142.88931 * 9 8 7 35 35 H 1.09001 * 110.86786 * 204.05069 * 10 9 8 36 36 H 1.09000 * 110.38856 * 81.04064 * 10 9 8 37 37 H 1.09001 * 110.47023 * 279.06379 * 11 10 9 38 38 H 1.09002 * 110.47128 * 156.46980 * 11 10 9 39 39 H 1.09006 * 110.07368 * 13.45203 * 14 12 11 40 40 H 1.08993 * 110.12945 * 251.92594 * 14 12 11 41 41 H 0.97003 * 119.99645 * 179.97438 * 19 18 16 42 42 H 1.08998 * 110.08056 * 272.00276 * 24 15 14 43 43 H 1.09004 * 110.11896 * 150.48650 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.7890 2.6379 1.1812 6 8 3.5704 3.4643 0.3208 7 7 4.7054 2.8870 2.1376 8 6 5.4379 4.1557 2.1375 9 6 6.2745 4.3284 0.8540 10 6 7.7174 3.9260 1.2975 11 6 7.8148 4.4904 2.7361 12 6 6.4137 4.2529 3.3341 13 1 6.3770 3.3595 3.9576 14 6 5.9790 5.5058 4.1128 15 7 4.6016 5.8024 3.6858 16 6 3.6165 6.3787 4.4423 17 1 2.6380 6.5472 4.0173 18 6 3.8754 6.7466 5.7555 19 7 5.0677 6.5410 6.2736 20 14 2.5317 7.5335 6.7873 21 1 1.3811 6.6012 6.8961 22 1 3.0585 7.8294 8.1438 23 1 2.0871 8.7952 6.1422 24 6 4.4902 5.3577 2.2867 25 1 -0.5400 0.9354 -0.0004 26 1 -0.5401 -0.9352 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3586 2.1316 0.0895 29 1 2.6213 1.4025 -0.9314 30 1 3.7399 0.5065 1.0922 31 1 2.4772 1.2357 2.1130 32 1 4.8799 2.2262 2.8259 33 1 5.8974 3.6800 0.0631 34 1 6.2665 5.3694 0.5309 35 1 8.4648 4.3856 0.6507 36 1 7.8253 2.8413 1.2999 37 1 8.0437 5.5559 2.7129 38 1 8.5696 3.9499 3.3074 39 1 6.6342 6.3428 3.8707 40 1 6.0044 5.3090 5.1845 41 1 5.2488 6.7984 7.1912 42 1 4.7938 6.1596 1.6138 43 1 3.4656 5.0555 2.0698 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111643985.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:56 Heat of formation + Delta-G solvation = -20.935547 kcal Electronic energy + Delta-G solvation = -22550.965672 eV Core-core repulsion = 19402.846681 eV Total energy + Delta-G solvation = -3148.118992 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.59614 -39.59978 -36.39396 -36.15906 -34.63748 -33.40316 -31.79544 -30.80901 -29.36265 -26.49881 -26.32945 -25.09946 -22.69352 -21.84246 -20.65598 -20.58992 -20.20500 -19.00951 -17.76116 -17.18699 -16.88770 -16.69080 -16.01259 -15.64400 -15.59045 -15.25397 -15.08608 -14.49744 -14.14681 -13.97908 -13.52823 -13.37989 -13.19949 -13.14140 -12.86880 -12.75821 -12.43839 -12.30477 -12.06452 -11.97385 -11.87135 -11.84037 -11.76206 -11.65053 -11.41961 -11.23945 -10.80152 -10.67729 -10.18817 -9.93382 -8.93220 -7.77141 -5.25938 1.41139 1.43912 1.46794 1.53624 1.76026 2.33027 2.46926 3.28066 3.46250 3.57712 3.81699 3.86486 4.00313 4.03174 4.22584 4.36078 4.37805 4.45757 4.47774 4.51963 4.60946 4.70455 4.74599 4.82144 4.90252 4.96157 4.97568 5.05900 5.09609 5.13709 5.22894 5.24920 5.29633 5.40225 5.50063 5.59543 5.74916 5.77191 5.82410 5.93873 6.34731 6.70257 7.08692 7.39741 7.73288 8.41398 9.20364 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013793 B = 0.005676 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.530062 B = 4931.528477 C = 6524.787595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.154 4.154 3 C -0.077 4.077 4 C -0.125 4.125 5 C 0.504 3.496 6 O -0.580 6.580 7 N -0.702 5.702 8 C 0.170 3.830 9 C -0.113 4.113 10 C -0.107 4.107 11 C -0.109 4.109 12 C -0.102 4.102 13 H 0.090 0.910 14 C 0.143 3.857 15 N -0.618 5.618 16 C -0.242 4.242 17 H 0.068 0.932 18 C -0.058 4.058 19 N -0.942 5.942 20 Si 0.980 3.020 21 H -0.278 1.278 22 H -0.286 1.286 23 H -0.283 1.283 24 C 0.136 3.864 25 H 0.086 0.914 26 H 0.114 0.886 27 H 0.131 0.869 28 H 0.048 0.952 29 H 0.071 0.929 30 H 0.126 0.874 31 H 0.102 0.898 32 H 0.410 0.590 33 H 0.070 0.930 34 H 0.054 0.946 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.055 0.945 38 H 0.088 0.912 39 H -0.012 1.012 40 H 0.094 0.906 41 H 0.250 0.750 42 H 0.008 0.992 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.644 -15.434 -9.420 18.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.172 4.172 3 C -0.115 4.115 4 C -0.165 4.165 5 C 0.292 3.708 6 O -0.460 6.460 7 N -0.353 5.353 8 C 0.082 3.918 9 C -0.152 4.152 10 C -0.145 4.145 11 C -0.147 4.147 12 C -0.122 4.122 13 H 0.108 0.892 14 C 0.018 3.982 15 N -0.342 5.342 16 C -0.370 4.370 17 H 0.086 0.914 18 C -0.251 4.251 19 N -0.591 5.591 20 Si 0.807 3.193 21 H -0.204 1.204 22 H -0.211 1.211 23 H -0.209 1.209 24 C 0.009 3.991 25 H 0.105 0.895 26 H 0.133 0.867 27 H 0.149 0.851 28 H 0.067 0.933 29 H 0.090 0.910 30 H 0.144 0.856 31 H 0.120 0.880 32 H 0.247 0.753 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.074 0.926 38 H 0.107 0.893 39 H 0.006 0.994 40 H 0.112 0.888 41 H 0.060 0.940 42 H 0.026 0.974 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 1.428 -14.740 -9.797 17.756 hybrid contribution -0.863 0.904 0.925 1.555 sum 0.565 -13.836 -8.872 16.446 Atomic orbital electron populations 1.24042 0.96230 1.02327 1.01012 1.23017 0.96102 0.98120 0.99962 1.20429 0.97527 0.95653 0.97859 1.21631 0.99126 0.94349 1.01377 1.21376 0.79121 0.89806 0.80476 1.90670 1.66486 1.49684 1.39196 1.45964 1.40340 1.18597 1.30415 1.21484 0.91012 0.83387 0.95950 1.22810 0.95687 1.01116 0.95610 1.22699 0.94896 1.01461 0.95415 1.22388 0.94893 1.01003 0.96372 1.22870 0.94879 0.99463 0.94969 0.89163 1.21925 0.83253 0.91694 1.01372 1.44847 1.09843 1.70999 1.08538 1.19318 0.91731 1.32275 0.93723 0.91390 1.25539 0.99294 1.02358 0.97927 1.69842 1.21135 1.53667 1.14493 0.85144 0.78237 0.78238 0.77638 1.20387 1.21148 1.20932 1.21750 0.97418 0.93974 0.85912 0.89521 0.86744 0.85092 0.93271 0.91005 0.85603 0.87989 0.75300 0.91152 0.92719 0.90055 0.89869 0.92647 0.89336 0.99450 0.88839 0.93991 0.97447 0.95600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.36 14.32 67.78 0.97 -2.39 16 2 C -0.15 -2.60 9.52 25.65 0.24 -2.36 16 3 C -0.08 -1.68 4.95 29.85 0.15 -1.54 16 4 C -0.13 -2.57 5.68 29.85 0.17 -2.40 16 5 C 0.50 15.31 6.81 87.66 0.60 15.91 16 6 O -0.58 -22.43 13.48 -3.03 -0.04 -22.47 16 7 N -0.70 -21.15 5.23 -417.29 -2.18 -23.34 16 8 C 0.17 6.13 0.94 4.85 0.00 6.14 16 9 C -0.11 -3.61 5.75 32.11 0.18 -3.43 16 10 C -0.11 -2.63 6.92 32.34 0.22 -2.40 16 11 C -0.11 -3.13 6.38 31.62 0.20 -2.93 16 12 C -0.10 -3.66 3.67 -9.55 -0.03 -3.70 16 13 H 0.09 2.96 7.69 -2.38 -0.02 2.94 16 14 C 0.14 7.04 5.77 86.51 0.50 7.54 16 15 N -0.62 -33.56 3.39 -695.23 -2.36 -35.92 16 16 C -0.24 -14.21 10.34 84.04 0.87 -13.35 16 17 H 0.07 3.97 7.83 -2.91 -0.02 3.94 16 18 C -0.06 -3.35 5.49 84.86 0.47 -2.89 16 19 N -0.94 -55.59 10.08 21.65 0.22 -55.38 16 20 Si 0.98 46.35 29.55 68.60 2.03 48.38 16 21 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 22 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 23 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 24 C 0.14 6.47 6.00 86.51 0.52 6.99 16 25 H 0.09 1.62 7.84 -2.91 -0.02 1.59 16 26 H 0.11 1.48 8.06 -2.91 -0.02 1.46 16 27 H 0.13 1.61 8.06 -2.91 -0.02 1.59 16 28 H 0.05 1.31 7.75 -2.39 -0.02 1.29 16 29 H 0.07 1.66 8.10 -2.39 -0.02 1.64 16 30 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.41 9.96 8.28 -92.71 -0.77 9.19 16 33 H 0.07 2.25 6.69 -2.39 -0.02 2.24 16 34 H 0.05 1.91 7.18 -2.39 -0.02 1.89 16 35 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.08 1.70 8.14 -2.39 -0.02 1.69 16 37 H 0.05 1.78 7.17 -2.39 -0.02 1.77 16 38 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 39 H -0.01 -0.65 7.12 -2.38 -0.02 -0.67 16 40 H 0.09 5.18 5.44 -2.39 -0.01 5.17 16 41 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 42 H 0.01 0.39 7.13 -2.39 -0.02 0.37 16 43 H 0.03 1.31 6.73 -2.39 -0.02 1.29 16 Total: -1.00 -71.22 335.70 2.95 -68.27 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: 0.22 Total: 21.25 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: 5.06 Total: -0.80 kcal Atomic # 7 Polarization: -110.31 SS G_CDS: -4.32 Total: -114.63 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -0.04 Total: -22.47 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -71.22 2.95 -68.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111643985.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.333 kcal (2) G-P(sol) polarization free energy of solvation -71.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds