Wall clock time and date at job start Mon Mar 30 2020 23:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32990 * 119.99944 * 2 1 4 4 C 1.50694 * 120.00225 * 0.02562 * 3 2 1 5 5 C 1.47103 * 119.99745 * 179.97438 * 3 2 1 6 6 O 1.21610 * 120.00097 * 0.02562 * 5 3 2 7 7 N 1.34777 * 119.99793 * 180.02562 * 5 3 2 8 8 C 1.46503 * 120.00149 * 180.02562 * 7 5 3 9 9 C 1.54191 * 111.61150 * 298.58290 * 8 7 5 10 10 C 1.56225 * 103.64611 * 260.32667 * 9 8 7 11 11 C 1.54843 * 103.17707 * 322.66058 * 10 9 8 12 12 C 1.54180 * 104.30263 * 37.76559 * 11 10 9 13 13 H 1.09008 * 112.24936 * 98.78801 * 12 11 10 14 14 C 1.53795 * 109.12936 * 223.08606 * 12 11 10 15 15 N 1.47219 * 106.35809 * 132.66938 * 14 12 11 16 16 C 1.36942 * 126.69913 * 148.78755 * 15 14 12 17 17 H 1.07997 * 119.99868 * 179.97438 * 16 15 14 18 18 C 1.38817 * 119.99862 * 359.97132 * 16 15 14 19 19 N 1.31619 * 120.00164 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99504 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46957 * 60.00895 * 20 18 16 22 22 H 1.48507 * 109.46781 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47440 * 300.00137 * 20 18 16 24 24 C 1.47214 * 106.60003 * 328.76841 * 15 14 12 25 25 H 1.09002 * 109.47152 * 299.99804 * 1 2 3 26 26 H 1.09001 * 109.46980 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47113 * 59.99886 * 1 2 3 28 28 H 1.08003 * 119.99742 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.47287 * 89.99715 * 4 3 2 30 30 H 1.09002 * 109.47474 * 209.99861 * 4 3 2 31 31 H 1.09006 * 109.47089 * 330.00110 * 4 3 2 32 32 H 0.97004 * 120.00071 * 359.97438 * 7 5 3 33 33 H 1.09007 * 110.46389 * 20.29272 * 9 8 7 34 34 H 1.08998 * 110.46808 * 142.88196 * 9 8 7 35 35 H 1.08998 * 110.86449 * 204.04974 * 10 9 8 36 36 H 1.09005 * 110.39015 * 81.04055 * 10 9 8 37 37 H 1.09000 * 110.46852 * 279.06084 * 11 10 9 38 38 H 1.09002 * 110.47205 * 156.47583 * 11 10 9 39 39 H 1.08998 * 110.07979 * 13.44332 * 14 12 11 40 40 H 1.08999 * 110.07618 * 251.89667 * 14 12 11 41 41 H 0.96998 * 119.99970 * 179.97438 * 19 18 16 42 42 H 1.09004 * 110.07967 * 272.01185 * 24 15 14 43 43 H 1.09002 * 110.08032 * 150.45663 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 1.4185 2.4568 0.0006 5 6 3.6430 1.1517 0.0006 6 8 4.2510 0.0985 0.0006 7 7 4.3169 2.3189 0.0011 8 6 5.7819 2.3189 0.0011 9 6 6.3498 1.6325 1.2596 10 6 6.7227 2.8273 2.1945 11 6 7.2602 3.8930 1.2081 12 6 6.3539 3.7559 -0.0317 13 1 5.5619 4.5047 -0.0489 14 6 7.2218 3.8194 -1.2998 15 7 6.7899 2.7011 -2.1543 16 6 6.7972 2.6669 -3.5232 17 1 6.4545 1.7845 -4.0432 18 6 7.2451 3.7664 -4.2426 19 7 7.6632 4.8416 -3.6089 20 14 7.2558 3.7193 -6.1100 21 1 5.8733 3.5041 -6.6076 22 1 7.7762 5.0075 -6.6346 23 1 8.1268 2.6091 -6.5723 24 6 6.3489 1.6266 -1.2497 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 2.0470 -0.9354 -0.0004 29 1 1.2372 2.7712 1.0284 30 1 2.0074 3.2166 -0.5133 31 1 0.4659 2.3266 -0.5129 32 1 3.8319 3.1590 0.0007 33 1 5.5997 0.9830 1.7108 34 1 7.2473 1.0655 1.0123 35 1 7.4944 2.5364 2.9072 36 1 5.8373 3.1936 2.7142 37 1 8.2973 3.6823 0.9472 38 1 7.1696 4.8906 1.6380 39 1 8.2741 3.7065 -1.0392 40 1 7.0630 4.7669 -1.8148 41 1 7.9765 5.6097 -4.1116 42 1 7.1953 0.9960 -0.9771 43 1 5.5747 1.0277 -1.7294 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111689589.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:00 Heat of formation + Delta-G solvation = -22.019515 kcal Electronic energy + Delta-G solvation = -22865.459331 eV Core-core repulsion = 19717.293335 eV Total energy + Delta-G solvation = -3148.165996 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.66978 -39.69384 -36.45637 -36.27748 -34.72322 -33.40727 -31.15930 -30.28423 -29.14002 -27.07462 -26.35354 -26.21766 -23.48301 -22.00130 -21.50663 -20.27209 -19.40913 -18.77773 -17.90346 -17.17655 -16.86479 -16.32991 -16.08419 -15.67176 -15.28982 -15.20869 -14.45822 -14.37126 -14.29436 -14.00403 -13.45845 -13.36039 -13.27340 -13.20429 -12.95514 -12.87681 -12.76177 -12.47312 -12.30974 -12.13610 -12.04165 -11.87165 -11.79873 -11.67295 -11.44024 -11.25493 -10.80978 -10.72009 -10.09244 -9.83887 -8.93924 -7.77636 -5.26495 0.44782 1.43382 1.46573 1.53342 2.24670 2.35733 2.46440 3.27452 3.43476 3.56081 3.81544 3.84978 4.00460 4.03019 4.31724 4.35089 4.39757 4.45560 4.49354 4.58419 4.72154 4.75855 4.79467 4.84259 4.85971 4.91383 4.94570 5.03869 5.08095 5.11143 5.16285 5.20914 5.27318 5.39154 5.48533 5.51555 5.58087 5.65911 5.76966 5.79673 6.33776 6.66111 7.08092 7.32088 7.72224 8.40617 9.20015 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014933 B = 0.006107 C = 0.004822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.543518 B = 4584.088323 C = 5805.489636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.074 4.074 3 C -0.205 4.205 4 C -0.112 4.112 5 C 0.541 3.459 6 O -0.586 6.586 7 N -0.695 5.695 8 C 0.168 3.832 9 C -0.114 4.114 10 C -0.107 4.107 11 C -0.108 4.108 12 C -0.102 4.102 13 H 0.088 0.912 14 C 0.143 3.857 15 N -0.618 5.618 16 C -0.243 4.243 17 H 0.067 0.933 18 C -0.058 4.058 19 N -0.942 5.942 20 Si 0.980 3.020 21 H -0.278 1.278 22 H -0.285 1.285 23 H -0.283 1.283 24 C 0.137 3.863 25 H 0.091 0.909 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.104 0.896 29 H 0.090 0.910 30 H 0.058 0.942 31 H 0.089 0.911 32 H 0.408 0.592 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.057 0.943 38 H 0.089 0.911 39 H -0.010 1.010 40 H 0.095 0.905 41 H 0.251 0.749 42 H 0.010 0.990 43 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.191 -1.776 12.807 18.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.094 4.094 3 C -0.208 4.208 4 C -0.169 4.169 5 C 0.332 3.668 6 O -0.468 6.468 7 N -0.346 5.346 8 C 0.080 3.920 9 C -0.153 4.153 10 C -0.145 4.145 11 C -0.146 4.146 12 C -0.122 4.122 13 H 0.107 0.893 14 C 0.018 3.982 15 N -0.342 5.342 16 C -0.371 4.371 17 H 0.085 0.915 18 C -0.251 4.251 19 N -0.591 5.591 20 Si 0.808 3.192 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.209 1.209 24 C 0.010 3.990 25 H 0.110 0.890 26 H 0.095 0.905 27 H 0.103 0.897 28 H 0.122 0.878 29 H 0.109 0.891 30 H 0.077 0.923 31 H 0.108 0.892 32 H 0.246 0.754 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.076 0.924 38 H 0.108 0.892 39 H 0.008 0.992 40 H 0.113 0.887 41 H 0.061 0.939 42 H 0.028 0.972 43 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -12.690 -2.356 12.589 18.029 hybrid contribution 0.483 -0.026 -1.450 1.528 sum -12.207 -2.382 11.140 16.697 Atomic orbital electron populations 1.21024 0.89130 1.04096 1.03701 1.23759 0.98236 0.96729 0.90709 1.21561 0.90908 0.98783 1.09519 1.20854 1.00205 0.92173 1.03645 1.19032 0.89204 0.83304 0.75296 1.90729 1.71201 1.32595 1.52303 1.45866 1.05978 1.08880 1.73832 1.21545 0.79631 0.96252 0.94549 1.22817 0.99840 0.97917 0.94685 1.22700 1.01429 0.93670 0.96667 1.22387 0.98098 1.00388 0.93678 1.22878 0.98454 0.93971 0.96892 0.89335 1.21928 0.92685 0.94729 0.88851 1.44837 1.74688 1.13392 1.01246 1.19314 1.36581 0.99776 0.81455 0.91476 1.25544 1.01110 0.95884 1.02529 1.69835 1.49728 1.05241 1.34287 0.85137 0.77860 0.76725 0.79486 1.20430 1.21042 1.20900 1.21734 0.95230 0.90881 0.91128 0.89033 0.90456 0.89656 0.87785 0.89140 0.92299 0.89183 0.75418 0.91519 0.92418 0.89821 0.90073 0.92379 0.89196 0.99174 0.88742 0.93941 0.97184 0.95874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.65 8.91 71.24 0.63 -1.02 16 2 C -0.07 -1.68 9.84 24.52 0.24 -1.44 16 3 C -0.20 -5.23 6.00 -18.71 -0.11 -5.35 16 4 C -0.11 -1.99 9.14 71.23 0.65 -1.34 16 5 C 0.54 18.76 6.73 86.57 0.58 19.35 16 6 O -0.59 -24.73 13.72 -4.06 -0.06 -24.79 16 7 N -0.69 -23.19 5.18 -420.82 -2.18 -25.36 16 8 C 0.17 6.39 0.94 4.85 0.00 6.39 16 9 C -0.11 -3.81 5.75 32.12 0.18 -3.62 16 10 C -0.11 -2.75 6.92 32.34 0.22 -2.52 16 11 C -0.11 -3.18 6.38 31.62 0.20 -2.98 16 12 C -0.10 -3.78 3.67 -9.55 -0.03 -3.82 16 13 H 0.09 3.02 7.69 -2.38 -0.02 3.00 16 14 C 0.14 7.15 5.77 86.51 0.50 7.65 16 15 N -0.62 -34.05 3.39 -695.25 -2.36 -36.41 16 16 C -0.24 -14.43 10.34 84.03 0.87 -13.56 16 17 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 18 C -0.06 -3.35 5.49 84.86 0.47 -2.88 16 19 N -0.94 -55.83 10.08 21.65 0.22 -55.61 16 20 Si 0.98 46.64 29.55 68.60 2.03 48.67 16 21 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 22 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 23 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 24 C 0.14 6.71 6.00 86.51 0.52 7.22 16 25 H 0.09 0.93 8.10 -2.39 -0.02 0.91 16 26 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.08 1.02 7.40 -2.38 -0.02 1.00 16 28 H 0.10 2.77 7.49 -2.91 -0.02 2.75 16 29 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.06 1.13 6.71 -2.39 -0.02 1.12 16 31 H 0.09 1.24 6.49 -2.38 -0.02 1.23 16 32 H 0.41 11.45 6.38 -92.71 -0.59 10.86 16 33 H 0.07 2.29 6.69 -2.38 -0.02 2.27 16 34 H 0.06 2.07 7.18 -2.39 -0.02 2.06 16 35 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 37 H 0.06 1.89 7.17 -2.39 -0.02 1.87 16 38 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 39 H -0.01 -0.51 7.12 -2.39 -0.02 -0.53 16 40 H 0.09 5.28 5.45 -2.39 -0.01 5.27 16 41 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 42 H 0.01 0.53 7.13 -2.38 -0.02 0.51 16 43 H 0.02 1.21 6.73 -2.39 -0.02 1.20 16 Total: -1.00 -72.78 329.70 3.00 -69.78 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: 0.42 Total: 21.64 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: 4.93 Total: 2.09 kcal Atomic # 7 Polarization: -113.07 SS G_CDS: -4.32 Total: -117.39 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.06 Total: -24.79 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -72.78 3.00 -69.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111689589.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.760 kcal (2) G-P(sol) polarization free energy of solvation -72.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds