Wall clock time and date at job start Tue Mar 31 2020 00:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47605 * 2 1 4 4 C 1.32995 * 119.99758 * 88.47429 * 3 2 1 5 5 C 1.47102 * 119.99995 * 352.24876 * 4 3 2 6 6 O 1.21610 * 120.00065 * 356.92244 * 5 4 3 7 7 N 1.34780 * 119.99679 * 176.92843 * 5 4 3 8 8 C 1.46507 * 119.99545 * 179.97438 * 7 5 4 9 9 H 1.08996 * 115.51850 * 350.42157 * 8 7 5 10 10 C 1.53001 * 117.44261 * 204.99732 * 8 7 5 11 11 H 1.09005 * 119.53662 * 4.12642 * 10 8 7 12 12 C 1.54384 * 118.12130 * 159.21322 * 10 8 7 13 13 N 1.48152 * 104.61644 * 87.19445 * 12 10 8 14 14 C 1.36936 * 127.83538 * 140.41251 * 13 12 10 15 15 H 1.07998 * 119.99349 * 194.86872 * 14 13 12 16 16 C 1.38809 * 120.00300 * 14.87356 * 14 13 12 17 17 N 1.31621 * 119.99861 * 10.31793 * 16 14 13 18 18 Si 1.86800 * 119.99930 * 190.32135 * 16 14 13 19 19 H 1.48497 * 109.47554 * 89.99694 * 18 16 14 20 20 H 1.48504 * 109.46825 * 209.99923 * 18 16 14 21 21 H 1.48502 * 109.47108 * 329.99749 * 18 16 14 22 22 C 1.48143 * 104.32029 * 320.41289 * 13 12 10 23 23 C 1.53001 * 117.43974 * 135.75854 * 8 7 5 24 24 H 1.09004 * 119.54252 * 355.88427 * 23 8 7 25 25 C 1.50693 * 120.00383 * 268.48198 * 3 2 1 26 26 C 1.53000 * 109.47346 * 274.99862 * 25 3 2 27 27 H 1.09002 * 109.47071 * 299.99931 * 1 2 3 28 28 H 1.09005 * 109.47302 * 59.99215 * 1 2 3 29 29 H 1.09000 * 109.47585 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47071 * 240.00069 * 2 1 3 31 31 H 1.09005 * 109.47302 * 120.00784 * 2 1 3 32 32 H 1.07999 * 119.99828 * 172.51240 * 4 3 2 33 33 H 0.96998 * 120.00532 * 359.97438 * 7 5 4 34 34 H 1.08998 * 110.40809 * 205.97429 * 12 10 8 35 35 H 1.09000 * 110.41237 * 328.29519 * 12 10 8 36 36 H 0.96999 * 119.99376 * 180.02562 * 17 16 14 37 37 H 1.09007 * 110.40633 * 158.36953 * 22 13 12 38 38 H 1.08997 * 110.41155 * 280.79630 * 22 13 12 39 39 H 1.08998 * 109.47569 * 34.99532 * 25 3 2 40 40 H 1.08999 * 109.47449 * 154.99607 * 25 3 2 41 41 H 1.09010 * 109.46906 * 300.00141 * 26 25 3 42 42 H 1.08999 * 109.47055 * 59.99504 * 26 25 3 43 43 H 1.08998 * 109.47627 * 180.02562 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2252 2.0579 1.1514 5 6 1.7895 1.4424 2.4145 6 8 1.2031 0.3771 2.4013 7 7 2.0402 2.0593 3.5863 8 6 1.6059 1.4466 4.8442 9 1 0.9493 0.5824 4.7434 10 6 1.3705 2.3757 6.0367 11 1 1.4631 3.4538 5.9045 12 6 0.4735 1.8702 7.1871 13 7 1.3958 1.1382 8.0862 14 6 1.4037 1.1300 9.4556 15 1 2.2644 0.7534 9.9883 16 6 0.3055 1.6055 10.1589 17 7 -0.8164 1.8734 9.5248 18 14 0.4199 1.8655 12.0051 19 1 0.8837 3.2486 12.2826 20 1 -0.9171 1.6594 12.6178 21 1 1.3840 0.8949 12.5829 22 6 2.3074 0.4171 7.1678 23 6 2.5998 1.4439 6.0073 24 1 3.6083 1.8279 5.8533 25 6 2.3163 2.1197 -1.3045 26 6 3.7319 1.7741 -1.7708 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5140 0.8899 32 1 2.6977 3.0289 1.1586 33 1 2.5082 2.9088 3.5969 34 1 0.0186 2.7104 7.7117 35 1 -0.2964 1.2011 6.8030 36 1 -1.5836 2.2060 10.0163 37 1 3.2362 0.1609 7.6777 38 1 1.8253 -0.4806 6.7809 39 1 1.5967 1.7936 -2.0556 40 1 2.2326 3.1975 -1.1651 41 1 4.4516 2.1002 -1.0198 42 1 3.8155 0.6963 -1.9103 43 1 3.9374 2.2800 -2.7142 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114138968.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:46 Heat of formation + Delta-G solvation = 30.552047 kcal Electronic energy + Delta-G solvation = -21356.888437 eV Core-core repulsion = 18211.002115 eV Total energy + Delta-G solvation = -3145.886322 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.97317 -38.47345 -36.53238 -34.40701 -32.68248 -32.01027 -30.59281 -29.65842 -27.00075 -25.80124 -24.70678 -23.40017 -22.04895 -20.62684 -20.35465 -19.27972 -18.42794 -17.00442 -16.82752 -16.10857 -15.15737 -14.92649 -14.66499 -14.60388 -14.07415 -13.76200 -13.43501 -13.26348 -12.94249 -12.73974 -12.66602 -12.18860 -12.18069 -11.91528 -11.54864 -11.50563 -11.44918 -11.04236 -10.90256 -10.84634 -10.76760 -10.32428 -10.16101 -10.09523 -9.71925 -9.39484 -9.25607 -9.16098 -8.71638 -8.21721 -6.87177 -5.79280 -3.12946 1.29265 3.27696 3.31766 3.39421 3.44148 3.46207 4.38462 4.47060 4.49384 4.55691 4.88947 4.97439 5.08292 5.21282 5.21606 5.35538 5.39721 5.43116 5.50703 5.54162 5.57954 5.58820 5.62450 5.76428 5.83627 5.87913 5.90530 6.13128 6.17512 6.24727 6.31527 6.45249 6.54582 6.56162 6.70312 6.90110 6.91206 7.36335 7.53763 7.70456 7.72845 8.20761 8.41895 9.11343 9.74246 10.51325 11.35177 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.044206 B = 0.002969 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.251463 B = 9429.388652 C = 9622.996828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.102 4.102 3 C -0.026 4.026 4 C -0.228 4.228 5 C 0.544 3.456 6 O -0.534 6.534 7 N -0.696 5.696 8 C 0.096 3.904 9 H 0.131 0.869 10 C -0.181 4.181 11 H 0.100 0.900 12 C 0.185 3.815 13 N -0.593 5.593 14 C -0.227 4.227 15 H 0.077 0.923 16 C -0.006 4.006 17 N -0.915 5.915 18 Si 0.913 3.087 19 H -0.288 1.288 20 H -0.290 1.290 21 H -0.280 1.280 22 C 0.158 3.842 23 C -0.187 4.187 24 H 0.105 0.895 25 C -0.097 4.097 26 C -0.147 4.147 27 H 0.067 0.933 28 H 0.041 0.959 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.103 0.897 32 H 0.123 0.877 33 H 0.397 0.603 34 H 0.090 0.910 35 H 0.026 0.974 36 H 0.255 0.745 37 H 0.050 0.950 38 H 0.030 0.970 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.219 2.113 -21.322 22.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.138 4.138 3 C -0.028 4.028 4 C -0.249 4.249 5 C 0.335 3.665 6 O -0.413 6.413 7 N -0.344 5.344 8 C -0.010 4.010 9 H 0.149 0.851 10 C -0.202 4.202 11 H 0.118 0.882 12 C 0.059 3.941 13 N -0.316 5.316 14 C -0.355 4.355 15 H 0.095 0.905 16 C -0.203 4.203 17 N -0.561 5.561 18 Si 0.743 3.257 19 H -0.215 1.215 20 H -0.217 1.217 21 H -0.205 1.205 22 C 0.031 3.969 23 C -0.208 4.208 24 H 0.123 0.877 25 C -0.134 4.134 26 C -0.205 4.205 27 H 0.086 0.914 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.121 0.879 32 H 0.141 0.859 33 H 0.231 0.769 34 H 0.108 0.892 35 H 0.044 0.956 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.048 0.952 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.638 1.394 -21.067 22.132 hybrid contribution 0.400 0.918 0.938 1.372 sum 7.038 2.312 -20.129 21.449 Atomic orbital electron populations 1.21549 0.94169 1.01746 1.01475 1.20954 0.97153 0.92417 1.03316 1.22543 0.90442 0.95784 0.93985 1.22377 1.07975 1.02295 0.92212 1.18509 0.79461 0.84709 0.83869 1.90731 1.41650 1.21820 1.87139 1.45335 1.59043 1.24631 1.05347 1.21856 1.00962 0.99556 0.78613 0.85124 1.24622 1.01587 0.96329 0.97708 0.88204 1.21053 0.89822 0.96764 0.86423 1.45131 1.34198 1.51199 1.01110 1.19002 0.99634 1.37636 0.79227 0.90480 1.24891 0.94954 1.02256 0.98229 1.69910 1.01647 1.49850 1.34679 0.86101 0.76859 0.78057 0.84634 1.21529 1.21656 1.20530 1.21688 0.94343 0.91927 0.88954 1.25091 0.94337 1.03267 0.98124 0.87663 1.20757 0.98134 1.00083 0.94428 1.21725 0.95506 1.02039 1.01181 0.91434 0.94024 0.92734 0.92460 0.87915 0.85894 0.76905 0.89150 0.95619 0.93536 0.93185 0.95184 0.90380 0.90768 0.92375 0.92317 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.52 9.39 37.16 0.35 -1.17 16 2 C -0.10 -1.13 5.34 -27.89 -0.15 -1.28 16 3 C -0.03 -0.25 4.61 -101.17 -0.47 -0.72 16 4 C -0.23 -2.44 9.60 -37.81 -0.36 -2.81 16 5 C 0.54 7.74 7.64 -12.66 -0.10 7.64 16 6 O -0.53 -9.13 10.90 5.27 0.06 -9.07 16 7 N -0.70 -9.65 5.56 -54.98 -0.31 -9.96 16 8 C 0.10 1.66 5.92 -67.93 -0.40 1.25 16 9 H 0.13 2.55 7.40 -51.93 -0.38 2.17 16 10 C -0.18 -3.47 6.98 -89.22 -0.62 -4.10 16 11 H 0.10 1.76 8.14 -51.93 -0.42 1.33 16 12 C 0.19 4.52 5.71 -2.41 -0.01 4.51 16 13 N -0.59 -15.39 3.38 -166.73 -0.56 -15.96 16 14 C -0.23 -6.37 10.35 -15.06 -0.16 -6.52 16 15 H 0.08 2.09 7.85 -52.49 -0.41 1.67 16 16 C -0.01 -0.17 5.39 -17.43 -0.09 -0.27 16 17 N -0.91 -26.97 10.88 55.49 0.60 -26.36 16 18 Si 0.91 22.02 29.57 -169.99 -5.03 16.99 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 22 C 0.16 3.40 7.09 -0.57 0.00 3.39 16 23 C -0.19 -3.38 7.34 -87.38 -0.64 -4.03 16 24 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16 25 C -0.10 -0.69 6.09 -27.89 -0.17 -0.86 16 26 C -0.15 -0.92 9.89 37.16 0.37 -0.55 16 27 H 0.07 0.94 6.61 -51.93 -0.34 0.60 16 28 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.53 8.11 -51.93 -0.42 0.11 16 31 H 0.10 1.41 5.78 -51.93 -0.30 1.11 16 32 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 33 H 0.40 4.41 8.81 -40.82 -0.36 4.05 16 34 H 0.09 2.44 6.51 -51.93 -0.34 2.10 16 35 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.47 8.04 -51.93 -0.42 0.05 16 41 H 0.06 0.38 8.14 -51.92 -0.42 -0.05 16 42 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 347.98 15.07 5.24 5.24 Total: -1.00 -31.21 347.98 -9.64 -40.85 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -7.18 Total: 3.77 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -2.46 Total: -5.50 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: -0.27 Total: -52.28 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.06 Total: -9.07 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 16.99 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.21 -9.64 -40.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114138968.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.402 kcal (2) G-P(sol) polarization free energy of solvation -31.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds