Wall clock time and date at job start Tue Mar 31 2020 00:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47605 * 2 1 4 4 C 1.32995 * 119.99758 * 88.47429 * 3 2 1 5 5 C 1.47102 * 119.99995 * 352.24876 * 4 3 2 6 6 O 1.21610 * 120.00065 * 356.92244 * 5 4 3 7 7 N 1.34780 * 119.99679 * 176.92843 * 5 4 3 8 8 C 1.46507 * 119.99545 * 179.97438 * 7 5 4 9 9 H 1.08996 * 115.51850 * 350.42157 * 8 7 5 10 10 C 1.53001 * 117.44261 * 204.99732 * 8 7 5 11 11 H 1.09005 * 119.53662 * 4.12642 * 10 8 7 12 12 C 1.54384 * 118.12130 * 159.21322 * 10 8 7 13 13 N 1.48152 * 104.61644 * 87.19445 * 12 10 8 14 14 C 1.36936 * 127.83538 * 140.41251 * 13 12 10 15 15 H 1.07998 * 119.99349 * 194.86872 * 14 13 12 16 16 C 1.38809 * 120.00300 * 14.87356 * 14 13 12 17 17 N 1.31621 * 119.99861 * 10.31793 * 16 14 13 18 18 Si 1.86800 * 119.99930 * 190.32135 * 16 14 13 19 19 H 1.48497 * 109.47554 * 89.99694 * 18 16 14 20 20 H 1.48504 * 109.46825 * 209.99923 * 18 16 14 21 21 H 1.48502 * 109.47108 * 329.99749 * 18 16 14 22 22 C 1.48143 * 104.32029 * 320.41289 * 13 12 10 23 23 C 1.53001 * 117.43974 * 135.75854 * 8 7 5 24 24 H 1.09004 * 119.54252 * 355.88427 * 23 8 7 25 25 C 1.50693 * 120.00383 * 268.48198 * 3 2 1 26 26 C 1.53000 * 109.47346 * 274.99862 * 25 3 2 27 27 H 1.09002 * 109.47071 * 299.99931 * 1 2 3 28 28 H 1.09005 * 109.47302 * 59.99215 * 1 2 3 29 29 H 1.09000 * 109.47585 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47071 * 240.00069 * 2 1 3 31 31 H 1.09005 * 109.47302 * 120.00784 * 2 1 3 32 32 H 1.07999 * 119.99828 * 172.51240 * 4 3 2 33 33 H 0.96998 * 120.00532 * 359.97438 * 7 5 4 34 34 H 1.08998 * 110.40809 * 205.97429 * 12 10 8 35 35 H 1.09000 * 110.41237 * 328.29519 * 12 10 8 36 36 H 0.96999 * 119.99376 * 180.02562 * 17 16 14 37 37 H 1.09007 * 110.40633 * 158.36953 * 22 13 12 38 38 H 1.08997 * 110.41155 * 280.79630 * 22 13 12 39 39 H 1.08998 * 109.47569 * 34.99532 * 25 3 2 40 40 H 1.08999 * 109.47449 * 154.99607 * 25 3 2 41 41 H 1.09010 * 109.46906 * 300.00141 * 26 25 3 42 42 H 1.08999 * 109.47055 * 59.99504 * 26 25 3 43 43 H 1.08998 * 109.47627 * 180.02562 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2252 2.0579 1.1514 5 6 1.7895 1.4424 2.4145 6 8 1.2031 0.3771 2.4013 7 7 2.0402 2.0593 3.5863 8 6 1.6059 1.4466 4.8442 9 1 0.9493 0.5824 4.7434 10 6 1.3705 2.3757 6.0367 11 1 1.4631 3.4538 5.9045 12 6 0.4735 1.8702 7.1871 13 7 1.3958 1.1382 8.0862 14 6 1.4037 1.1300 9.4556 15 1 2.2644 0.7534 9.9883 16 6 0.3055 1.6055 10.1589 17 7 -0.8164 1.8734 9.5248 18 14 0.4199 1.8655 12.0051 19 1 0.8837 3.2486 12.2826 20 1 -0.9171 1.6594 12.6178 21 1 1.3840 0.8949 12.5829 22 6 2.3074 0.4171 7.1678 23 6 2.5998 1.4439 6.0073 24 1 3.6083 1.8279 5.8533 25 6 2.3163 2.1197 -1.3045 26 6 3.7319 1.7741 -1.7708 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5140 0.8899 32 1 2.6977 3.0289 1.1586 33 1 2.5082 2.9088 3.5969 34 1 0.0186 2.7104 7.7117 35 1 -0.2964 1.2011 6.8030 36 1 -1.5836 2.2060 10.0163 37 1 3.2362 0.1609 7.6777 38 1 1.8253 -0.4806 6.7809 39 1 1.5967 1.7936 -2.0556 40 1 2.2326 3.1975 -1.1651 41 1 4.4516 2.1002 -1.0198 42 1 3.8155 0.6963 -1.9103 43 1 3.9374 2.2800 -2.7142 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114138968.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:45 Heat of formation + Delta-G solvation = 11.957663 kcal Electronic energy + Delta-G solvation = -21357.694750 eV Core-core repulsion = 18211.002115 eV Total energy + Delta-G solvation = -3146.692635 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.18267 -39.95546 -37.44408 -35.99506 -34.33354 -32.76190 -32.26668 -30.70280 -28.81453 -27.64310 -25.68585 -24.15896 -23.55110 -22.02164 -21.82276 -20.91128 -19.39738 -18.83796 -18.02557 -17.40312 -16.74741 -15.99265 -15.98061 -15.69996 -15.38240 -14.96902 -14.79593 -14.64430 -14.33005 -13.86032 -13.66673 -13.45334 -13.32750 -13.20779 -12.92761 -12.87973 -12.72072 -12.55208 -12.15110 -12.11285 -12.02033 -11.94241 -11.79019 -11.61151 -11.51348 -10.87527 -10.72332 -10.46770 -10.10057 -9.55283 -8.95381 -7.93236 -5.29905 0.42106 1.46320 1.48542 1.57617 2.09524 2.23943 2.48191 2.91905 3.27328 3.58823 3.73766 3.82267 3.83744 3.96780 4.07641 4.19535 4.29140 4.34317 4.44672 4.46660 4.50832 4.64113 4.70741 4.79724 4.83417 4.89242 4.95993 5.00110 5.04804 5.13776 5.24087 5.27474 5.38229 5.41142 5.42662 5.45734 5.56669 5.62045 5.65387 5.71952 6.14397 6.65057 6.98320 7.34060 7.65408 8.44038 9.20858 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.044206 B = 0.002969 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.251463 B = 9429.388652 C = 9622.996828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.104 4.104 3 C -0.016 4.016 4 C -0.236 4.236 5 C 0.537 3.463 6 O -0.570 6.570 7 N -0.685 5.685 8 C 0.118 3.882 9 H 0.103 0.897 10 C -0.182 4.182 11 H 0.124 0.876 12 C 0.190 3.810 13 N -0.617 5.617 14 C -0.242 4.242 15 H 0.084 0.916 16 C -0.064 4.064 17 N -0.949 5.949 18 Si 0.984 3.016 19 H -0.283 1.283 20 H -0.295 1.295 21 H -0.267 1.267 22 C 0.149 3.851 23 C -0.166 4.166 24 H 0.139 0.861 25 C -0.093 4.093 26 C -0.146 4.146 27 H 0.037 0.963 28 H 0.062 0.938 29 H 0.051 0.949 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.155 0.845 33 H 0.415 0.585 34 H 0.059 0.941 35 H -0.006 1.006 36 H 0.250 0.750 37 H 0.062 0.938 38 H 0.021 0.979 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.056 0.944 42 H 0.053 0.947 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.333 3.414 -23.168 25.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.141 4.141 3 C -0.018 4.018 4 C -0.257 4.257 5 C 0.329 3.671 6 O -0.451 6.451 7 N -0.334 5.334 8 C 0.010 3.990 9 H 0.121 0.879 10 C -0.203 4.203 11 H 0.141 0.859 12 C 0.064 3.936 13 N -0.341 5.341 14 C -0.371 4.371 15 H 0.101 0.899 16 C -0.257 4.257 17 N -0.596 5.596 18 Si 0.811 3.189 19 H -0.210 1.210 20 H -0.221 1.221 21 H -0.191 1.191 22 C 0.023 3.977 23 C -0.188 4.188 24 H 0.157 0.843 25 C -0.130 4.130 26 C -0.203 4.203 27 H 0.057 0.943 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.173 0.827 33 H 0.252 0.748 34 H 0.077 0.923 35 H 0.012 0.988 36 H 0.059 0.941 37 H 0.080 0.920 38 H 0.038 0.962 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.798 2.708 -22.946 24.724 hybrid contribution -0.292 0.392 1.419 1.501 sum 8.506 3.100 -21.527 23.354 Atomic orbital electron populations 1.21495 0.94623 1.01523 1.00975 1.20912 0.96771 0.93584 1.02851 1.22806 0.88702 0.94957 0.95297 1.22411 1.09293 1.03667 0.90322 1.19204 0.78747 0.84289 0.84859 1.90740 1.43192 1.23555 1.87651 1.45157 1.59092 1.25280 1.03894 1.21357 0.99833 0.98008 0.79762 0.87893 1.24303 1.00982 0.97701 0.97317 0.85862 1.20782 0.90157 0.94911 0.87793 1.45430 1.35083 1.52294 1.01251 1.19414 0.99843 1.37166 0.80641 0.89867 1.25784 0.94623 1.02466 1.02870 1.70115 1.02254 1.50999 1.36256 0.85007 0.76644 0.78183 0.79046 1.20953 1.22137 1.19124 1.21820 0.93873 0.92304 0.89674 1.25003 0.95560 1.01130 0.97068 0.84346 1.20817 0.98887 1.00587 0.92729 1.21727 0.94730 1.01990 1.01898 0.94344 0.91897 0.92961 0.90403 0.90873 0.82719 0.74769 0.92307 0.98779 0.94059 0.91977 0.96162 0.89423 0.89309 0.92522 0.92737 0.90659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 9.39 71.98 0.68 -2.23 16 2 C -0.10 -2.20 5.34 29.85 0.16 -2.05 16 3 C -0.02 -0.27 4.61 -17.62 -0.08 -0.36 16 4 C -0.24 -4.49 9.60 23.43 0.22 -4.27 16 5 C 0.54 14.72 7.64 86.57 0.66 15.39 16 6 O -0.57 -19.85 10.90 -4.06 -0.04 -19.90 16 7 N -0.68 -17.79 5.56 -446.12 -2.48 -20.27 16 8 C 0.12 4.01 5.92 44.99 0.27 4.28 16 9 H 0.10 4.17 7.40 -2.39 -0.02 4.16 16 10 C -0.18 -6.91 6.98 -9.89 -0.07 -6.98 16 11 H 0.12 4.12 8.14 -2.38 -0.02 4.10 16 12 C 0.19 9.64 5.71 86.53 0.49 10.13 16 13 N -0.62 -32.76 3.38 -681.43 -2.30 -35.07 16 14 C -0.24 -13.80 10.35 84.03 0.87 -12.93 16 15 H 0.08 4.51 7.85 -2.91 -0.02 4.48 16 16 C -0.06 -3.67 5.39 84.86 0.46 -3.22 16 17 N -0.95 -58.01 10.88 21.65 0.24 -57.78 16 18 Si 0.98 45.86 29.57 68.60 2.03 47.89 16 19 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 20 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 22 C 0.15 6.45 7.09 87.72 0.62 7.07 16 23 C -0.17 -5.79 7.34 -8.70 -0.06 -5.85 16 24 H 0.14 3.98 8.14 -2.39 -0.02 3.96 16 25 C -0.09 -0.99 6.09 29.85 0.18 -0.81 16 26 C -0.15 -1.34 9.89 71.98 0.71 -0.62 16 27 H 0.04 1.08 6.61 -2.39 -0.02 1.07 16 28 H 0.06 1.11 8.14 -2.38 -0.02 1.10 16 29 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.08 1.30 8.11 -2.39 -0.02 1.28 16 31 H 0.07 2.03 5.78 -2.38 -0.01 2.01 16 32 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 33 H 0.42 7.89 8.81 -92.71 -0.82 7.08 16 34 H 0.06 3.33 6.51 -2.39 -0.02 3.32 16 35 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 36 H 0.25 14.79 8.31 -92.71 -0.77 14.01 16 37 H 0.06 2.50 8.14 -2.38 -0.02 2.48 16 38 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.09 0.74 8.04 -2.39 -0.02 0.73 16 41 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 42 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 Total: -1.00 -70.91 347.98 2.72 -68.19 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: 0.17 Total: 19.37 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: 5.11 Total: -2.44 kcal Atomic # 7 Polarization: -108.57 SS G_CDS: -4.55 Total: -113.12 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.04 Total: -19.90 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -70.91 2.72 -68.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114138968.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.147 kcal (2) G-P(sol) polarization free energy of solvation -70.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds