Wall clock time and date at job start Tue Mar 31 2020 00:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50700 * 119.99968 * 2 1 4 4 H 1.09006 * 109.46971 * 359.97438 * 3 2 1 5 5 C 1.53002 * 109.47345 * 239.99993 * 3 2 1 6 6 C 1.53002 * 109.47122 * 64.99592 * 5 3 2 7 7 C 1.53001 * 109.46997 * 119.99946 * 3 2 1 8 8 C 1.50695 * 109.47088 * 294.99812 * 7 3 2 9 9 O 1.21282 * 119.99985 * 0.02562 * 8 7 3 10 10 N 1.34780 * 120.00030 * 179.97438 * 8 7 3 11 11 C 1.46501 * 119.99782 * 180.02562 * 10 8 7 12 12 H 1.08997 * 115.52210 * 350.41617 * 11 10 8 13 13 C 1.53003 * 117.43983 * 205.00560 * 11 10 8 14 14 H 1.08997 * 119.54251 * 5.71321 * 13 11 10 15 15 C 1.54386 * 118.12205 * 160.81496 * 13 11 10 16 16 N 1.48144 * 104.61976 * 87.18677 * 15 13 11 17 17 C 1.36937 * 127.83540 * 140.41499 * 16 15 13 18 18 H 1.08000 * 120.00423 * 340.87638 * 17 16 15 19 19 C 1.38819 * 119.99653 * 160.88113 * 17 16 15 20 20 N 1.31626 * 119.99731 * 163.43993 * 19 17 16 21 21 Si 1.86791 * 120.00028 * 343.43229 * 19 17 16 22 22 H 1.48500 * 109.46871 * 85.38968 * 21 19 17 23 23 H 1.48498 * 109.47184 * 205.38595 * 21 19 17 24 24 H 1.48497 * 109.47244 * 325.39010 * 21 19 17 25 25 C 1.48140 * 104.32675 * 320.41310 * 16 15 13 26 26 C 1.53004 * 117.44015 * 135.76614 * 11 10 8 27 27 H 1.08999 * 119.53790 * 355.87876 * 26 11 10 28 28 H 1.08002 * 120.00505 * 0.02562 * 1 2 3 29 29 H 1.08000 * 119.99742 * 179.97438 * 1 2 3 30 30 H 1.07998 * 120.00389 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.47340 * 185.00107 * 5 3 2 32 32 H 1.09003 * 109.46675 * 305.00020 * 5 3 2 33 33 H 1.09007 * 109.46484 * 60.00093 * 6 5 3 34 34 H 1.08994 * 109.47132 * 180.02562 * 6 5 3 35 35 H 1.08998 * 109.47433 * 300.00457 * 6 5 3 36 36 H 1.08998 * 109.47472 * 55.00322 * 7 3 2 37 37 H 1.09005 * 109.46850 * 175.00152 * 7 3 2 38 38 H 0.96994 * 119.99833 * 0.02562 * 10 8 7 39 39 H 1.09003 * 110.40393 * 205.97451 * 15 13 11 40 40 H 1.08996 * 110.40851 * 328.39976 * 15 13 11 41 41 H 0.96993 * 119.99552 * 180.02562 * 20 19 17 42 42 H 1.08990 * 110.41074 * 158.36725 * 25 16 15 43 43 H 1.09001 * 110.40911 * 280.80634 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3551 2.1336 -0.0005 5 6 2.9431 1.3862 -1.2492 6 6 2.0564 1.4307 -2.4953 7 6 2.9430 1.3861 1.2493 8 6 2.0697 1.4301 2.4765 9 8 0.8626 1.3991 2.3632 10 7 2.6300 1.5027 3.7002 11 6 1.7809 1.5448 4.8933 12 1 0.7153 1.6776 4.7068 13 6 2.3630 2.1944 6.1503 14 1 3.3358 2.6837 6.1012 15 6 1.3836 2.6579 7.2501 16 7 1.1828 1.4614 8.1004 17 6 1.0844 1.4078 9.4651 18 1 1.4515 2.2269 10.0657 19 6 0.5129 0.3003 10.0767 20 7 0.7028 0.0870 11.3617 21 14 -0.5257 -0.8869 9.0763 22 1 0.3562 -1.8892 8.4261 23 1 -1.4864 -1.5799 9.9719 24 1 -1.2725 -0.1356 8.0357 25 6 1.1126 0.3363 7.1393 26 6 2.1844 0.6637 6.0773 27 1 3.0355 -0.0103 5.9801 28 1 -0.5401 0.9353 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 3.5540 2.2879 -1.2056 32 1 3.5906 0.5105 -1.2951 33 1 1.4089 2.3064 -2.4494 34 1 2.6831 1.4880 -3.3853 35 1 1.4455 0.5290 -2.5390 36 1 3.5906 0.5105 1.2952 37 1 3.5539 2.2879 1.2056 38 1 3.5954 1.5271 3.7908 39 1 1.8218 3.4687 7.8322 40 1 0.4383 2.9735 6.8088 41 1 0.3038 -0.6869 11.7889 42 1 1.3463 -0.6044 7.6376 43 1 0.1249 0.2894 6.6805 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114726055.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:11 Heat of formation + Delta-G solvation = 34.868576 kcal Electronic energy + Delta-G solvation = -21455.474291 eV Core-core repulsion = 18309.775148 eV Total energy + Delta-G solvation = -3145.699143 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.10817 -38.81426 -36.83902 -34.59892 -32.73518 -31.91744 -31.10727 -30.12910 -27.81228 -25.98326 -24.76253 -22.00235 -21.67110 -20.67916 -20.48675 -19.69662 -19.57268 -17.06321 -16.91335 -16.45906 -15.68478 -15.21608 -14.88612 -14.74770 -14.18516 -13.91700 -13.59497 -13.54127 -13.28163 -12.93497 -12.49536 -12.40374 -12.30626 -12.11942 -11.67940 -11.57049 -11.43546 -11.22079 -11.05885 -11.01825 -10.72998 -10.68660 -10.21697 -10.06925 -9.89401 -9.57431 -9.33711 -9.19021 -8.82198 -8.52041 -7.13394 -5.94426 -3.28729 2.35306 2.62342 3.04607 3.32868 3.48446 3.50247 4.08830 4.48049 4.52921 4.53233 4.60244 4.84897 4.96950 5.00231 5.11142 5.13372 5.15545 5.23123 5.26468 5.33671 5.44217 5.53203 5.60086 5.64785 5.69841 5.70232 5.76300 5.87123 5.97445 6.05781 6.09822 6.23614 6.47597 6.53839 6.61505 6.65184 6.66084 6.77893 6.84421 7.51060 7.58000 8.25299 8.30370 8.76228 9.64568 10.18579 11.21771 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.034718 B = 0.003371 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.293949 B = 8304.447446 C = 8820.275633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.155 4.155 3 C -0.044 4.044 4 H 0.081 0.919 5 C -0.116 4.116 6 C -0.151 4.151 7 C -0.134 4.134 8 C 0.513 3.487 9 O -0.529 6.529 10 N -0.702 5.702 11 C 0.101 3.899 12 H 0.132 0.868 13 C -0.178 4.178 14 H 0.109 0.891 15 C 0.158 3.842 16 N -0.605 5.605 17 C -0.236 4.236 18 H 0.096 0.904 19 C 0.018 3.982 20 N -0.914 5.914 21 Si 0.888 3.112 22 H -0.286 1.286 23 H -0.302 1.302 24 H -0.270 1.270 25 C 0.130 3.870 26 C -0.176 4.176 27 H 0.108 0.892 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.057 0.943 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.399 0.601 39 H 0.062 0.938 40 H 0.033 0.967 41 H 0.264 0.736 42 H 0.071 0.929 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.874 2.438 -25.444 26.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.173 4.173 3 C -0.063 4.063 4 H 0.100 0.900 5 C -0.153 4.153 6 C -0.209 4.209 7 C -0.174 4.174 8 C 0.299 3.701 9 O -0.404 6.404 10 N -0.352 5.352 11 C -0.005 4.005 12 H 0.149 0.851 13 C -0.199 4.199 14 H 0.127 0.873 15 C 0.031 3.969 16 N -0.329 5.329 17 C -0.363 4.363 18 H 0.113 0.887 19 C -0.180 4.180 20 N -0.558 5.558 21 Si 0.719 3.281 22 H -0.214 1.214 23 H -0.230 1.230 24 H -0.196 1.196 25 C 0.004 3.996 26 C -0.198 4.198 27 H 0.126 0.874 28 H 0.114 0.886 29 H 0.108 0.892 30 H 0.119 0.881 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.232 0.768 39 H 0.081 0.919 40 H 0.051 0.949 41 H 0.074 0.926 42 H 0.089 0.911 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 5.923 2.329 -25.221 26.011 hybrid contribution 0.121 -0.862 -0.229 0.900 sum 6.044 1.467 -25.449 26.198 Atomic orbital electron populations 1.23711 0.95946 1.01377 0.98771 1.22610 0.96009 0.97008 1.01713 1.20154 0.96556 0.97190 0.92370 0.90023 1.21542 0.97854 1.01904 0.94048 1.21760 0.99837 1.02207 0.97068 1.21721 0.98704 1.04288 0.92677 1.20657 0.89326 0.75823 0.84286 1.90718 1.14796 1.48464 1.86454 1.45425 1.09698 1.74849 1.05190 1.21793 0.95799 1.03074 0.79836 0.85067 1.24307 1.01899 0.96707 0.96951 0.87256 1.21127 0.94940 0.90869 0.89915 1.45542 1.84987 1.00311 1.02079 1.18665 1.33883 1.06080 0.77632 0.88694 1.25012 0.99527 0.98082 0.95345 1.69772 1.46578 1.29473 1.09999 0.86907 0.81043 0.81053 0.79118 1.21390 1.22992 1.19560 1.21656 0.94836 0.93648 0.89437 1.24353 1.03005 0.93988 0.98428 0.87391 0.88606 0.89206 0.88129 0.91838 0.91857 0.92782 0.92953 0.92366 0.88879 0.88795 0.76762 0.91944 0.94929 0.92631 0.91054 0.94530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 13.22 29.02 0.38 -1.40 16 2 C -0.16 -1.57 6.76 -36.02 -0.24 -1.81 16 3 C -0.04 -0.38 1.82 -91.77 -0.17 -0.55 16 4 H 0.08 0.84 7.60 -51.93 -0.39 0.45 16 5 C -0.12 -0.77 5.39 -26.73 -0.14 -0.91 16 6 C -0.15 -1.02 9.73 37.16 0.36 -0.66 16 7 C -0.13 -1.09 5.16 -27.89 -0.14 -1.23 16 8 C 0.51 6.33 7.58 -10.99 -0.08 6.24 16 9 O -0.53 -8.56 13.73 5.56 0.08 -8.49 16 10 N -0.70 -8.36 5.56 -53.80 -0.30 -8.66 16 11 C 0.10 1.56 5.97 -67.93 -0.41 1.16 16 12 H 0.13 2.32 7.40 -51.93 -0.38 1.93 16 13 C -0.18 -2.88 7.06 -89.22 -0.63 -3.51 16 14 H 0.11 1.53 8.14 -51.93 -0.42 1.11 16 15 C 0.16 3.12 7.04 -2.41 -0.02 3.11 16 16 N -0.60 -14.80 3.19 -168.87 -0.54 -15.34 16 17 C -0.24 -6.74 10.78 -15.06 -0.16 -6.90 16 18 H 0.10 2.85 8.06 -52.49 -0.42 2.43 16 19 C 0.02 0.55 5.49 -17.42 -0.10 0.45 16 20 N -0.91 -28.42 13.97 55.49 0.78 -27.64 16 21 Si 0.89 23.01 24.49 -169.99 -4.16 18.84 16 22 H -0.29 -7.15 6.36 56.52 0.36 -6.79 16 23 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 24 H -0.27 -6.91 6.33 56.52 0.36 -6.55 16 25 C 0.13 2.89 4.49 -2.41 -0.01 2.88 16 26 C -0.18 -3.09 7.06 -89.21 -0.63 -3.72 16 27 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16 28 H 0.10 1.12 7.83 -52.49 -0.41 0.71 16 29 H 0.09 0.93 8.06 -52.49 -0.42 0.50 16 30 H 0.10 0.93 8.06 -52.49 -0.42 0.51 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.06 0.42 7.38 -51.93 -0.38 0.04 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.40 3.54 8.83 -40.82 -0.36 3.18 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 42 H 0.07 1.70 5.06 -51.93 -0.26 1.44 16 43 H 0.04 0.84 6.80 -51.93 -0.35 0.48 16 LS Contribution 343.08 15.07 5.17 5.17 Total: -1.00 -32.99 343.08 -8.23 -41.22 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -7.27 Total: 1.76 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -1.99 Total: -6.86 kcal Atomic # 7 Polarization: -51.58 SS G_CDS: -0.06 Total: -51.65 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.08 Total: -8.49 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -4.16 Total: 18.84 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.99 -8.23 -41.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114726055.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.091 kcal (2) G-P(sol) polarization free energy of solvation -32.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds