Wall clock time and date at job start Tue Mar 31 2020 00:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50700 * 119.99968 * 2 1 4 4 H 1.09006 * 109.46971 * 359.97438 * 3 2 1 5 5 C 1.53002 * 109.47345 * 239.99993 * 3 2 1 6 6 C 1.53002 * 109.47122 * 64.99592 * 5 3 2 7 7 C 1.53001 * 109.46997 * 119.99946 * 3 2 1 8 8 C 1.50695 * 109.47088 * 294.99812 * 7 3 2 9 9 O 1.21282 * 119.99985 * 0.02562 * 8 7 3 10 10 N 1.34780 * 120.00030 * 179.97438 * 8 7 3 11 11 C 1.46501 * 119.99782 * 180.02562 * 10 8 7 12 12 H 1.08997 * 115.52210 * 350.41617 * 11 10 8 13 13 C 1.53003 * 117.43983 * 205.00560 * 11 10 8 14 14 H 1.08997 * 119.54251 * 5.71321 * 13 11 10 15 15 C 1.54386 * 118.12205 * 160.81496 * 13 11 10 16 16 N 1.48144 * 104.61976 * 87.18677 * 15 13 11 17 17 C 1.36937 * 127.83540 * 140.41499 * 16 15 13 18 18 H 1.08000 * 120.00423 * 340.87638 * 17 16 15 19 19 C 1.38819 * 119.99653 * 160.88113 * 17 16 15 20 20 N 1.31626 * 119.99731 * 163.43993 * 19 17 16 21 21 Si 1.86791 * 120.00028 * 343.43229 * 19 17 16 22 22 H 1.48500 * 109.46871 * 85.38968 * 21 19 17 23 23 H 1.48498 * 109.47184 * 205.38595 * 21 19 17 24 24 H 1.48497 * 109.47244 * 325.39010 * 21 19 17 25 25 C 1.48140 * 104.32675 * 320.41310 * 16 15 13 26 26 C 1.53004 * 117.44015 * 135.76614 * 11 10 8 27 27 H 1.08999 * 119.53790 * 355.87876 * 26 11 10 28 28 H 1.08002 * 120.00505 * 0.02562 * 1 2 3 29 29 H 1.08000 * 119.99742 * 179.97438 * 1 2 3 30 30 H 1.07998 * 120.00389 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.47340 * 185.00107 * 5 3 2 32 32 H 1.09003 * 109.46675 * 305.00020 * 5 3 2 33 33 H 1.09007 * 109.46484 * 60.00093 * 6 5 3 34 34 H 1.08994 * 109.47132 * 180.02562 * 6 5 3 35 35 H 1.08998 * 109.47433 * 300.00457 * 6 5 3 36 36 H 1.08998 * 109.47472 * 55.00322 * 7 3 2 37 37 H 1.09005 * 109.46850 * 175.00152 * 7 3 2 38 38 H 0.96994 * 119.99833 * 0.02562 * 10 8 7 39 39 H 1.09003 * 110.40393 * 205.97451 * 15 13 11 40 40 H 1.08996 * 110.40851 * 328.39976 * 15 13 11 41 41 H 0.96993 * 119.99552 * 180.02562 * 20 19 17 42 42 H 1.08990 * 110.41074 * 158.36725 * 25 16 15 43 43 H 1.09001 * 110.40911 * 280.80634 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3551 2.1336 -0.0005 5 6 2.9431 1.3862 -1.2492 6 6 2.0564 1.4307 -2.4953 7 6 2.9430 1.3861 1.2493 8 6 2.0697 1.4301 2.4765 9 8 0.8626 1.3991 2.3632 10 7 2.6300 1.5027 3.7002 11 6 1.7809 1.5448 4.8933 12 1 0.7153 1.6776 4.7068 13 6 2.3630 2.1944 6.1503 14 1 3.3358 2.6837 6.1012 15 6 1.3836 2.6579 7.2501 16 7 1.1828 1.4614 8.1004 17 6 1.0844 1.4078 9.4651 18 1 1.4515 2.2269 10.0657 19 6 0.5129 0.3003 10.0767 20 7 0.7028 0.0870 11.3617 21 14 -0.5257 -0.8869 9.0763 22 1 0.3562 -1.8892 8.4261 23 1 -1.4864 -1.5799 9.9719 24 1 -1.2725 -0.1356 8.0357 25 6 1.1126 0.3363 7.1393 26 6 2.1844 0.6637 6.0773 27 1 3.0355 -0.0103 5.9801 28 1 -0.5401 0.9353 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 3.5540 2.2879 -1.2056 32 1 3.5906 0.5105 -1.2951 33 1 1.4089 2.3064 -2.4494 34 1 2.6831 1.4880 -3.3853 35 1 1.4455 0.5290 -2.5390 36 1 3.5906 0.5105 1.2952 37 1 3.5539 2.2879 1.2056 38 1 3.5954 1.5271 3.7908 39 1 1.8218 3.4687 7.8322 40 1 0.4383 2.9735 6.8088 41 1 0.3038 -0.6869 11.7889 42 1 1.3463 -0.6044 7.6376 43 1 0.1249 0.2894 6.6805 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114726055.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:10 Heat of formation + Delta-G solvation = 12.986100 kcal Electronic energy + Delta-G solvation = -21456.423186 eV Core-core repulsion = 18309.775148 eV Total energy + Delta-G solvation = -3146.648038 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.24298 -40.10428 -37.62667 -36.09801 -34.41050 -32.79356 -32.55975 -31.02728 -29.45291 -27.70390 -25.70266 -23.42904 -22.50572 -22.11555 -21.56423 -21.06023 -20.39561 -18.97894 -17.94087 -17.82504 -17.04017 -16.45270 -15.87359 -15.55519 -15.48356 -15.32182 -15.02149 -14.67414 -14.46303 -14.29431 -13.99235 -13.76592 -13.40294 -13.16559 -12.99875 -12.84582 -12.67979 -12.42678 -12.16223 -12.10624 -12.01802 -11.73982 -11.65362 -11.54507 -11.33610 -11.06300 -10.85951 -10.77943 -10.01754 -9.69557 -9.17897 -8.20605 -5.50830 1.24463 1.35583 1.43133 1.54625 1.67603 2.03274 2.36055 2.76984 3.03470 3.23864 3.69068 3.73773 3.83742 3.87178 3.93195 3.99015 4.24495 4.31624 4.39118 4.42603 4.48873 4.61453 4.65743 4.69449 4.71275 4.79043 4.91240 4.93911 5.04364 5.09461 5.10211 5.15428 5.21866 5.23023 5.42580 5.49342 5.54744 5.55777 5.85418 6.06828 6.07185 6.61949 6.63661 7.34716 7.44761 8.09355 8.99404 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.034718 B = 0.003371 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.293949 B = 8304.447446 C = 8820.275633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.148 4.148 3 C -0.045 4.045 4 H 0.060 0.940 5 C -0.109 4.109 6 C -0.154 4.154 7 C -0.124 4.124 8 C 0.507 3.493 9 O -0.572 6.572 10 N -0.689 5.689 11 C 0.123 3.877 12 H 0.108 0.892 13 C -0.159 4.159 14 H 0.144 0.856 15 C 0.149 3.851 16 N -0.627 5.627 17 C -0.225 4.225 18 H 0.068 0.932 19 C -0.039 4.039 20 N -0.959 5.959 21 Si 0.947 3.053 22 H -0.272 1.272 23 H -0.306 1.306 24 H -0.269 1.269 25 C 0.124 3.876 26 C -0.182 4.182 27 H 0.130 0.870 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.113 0.887 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.046 0.954 34 H 0.063 0.937 35 H 0.047 0.953 36 H 0.120 0.880 37 H 0.126 0.874 38 H 0.419 0.581 39 H 0.067 0.933 40 H 0.034 0.966 41 H 0.263 0.737 42 H 0.053 0.947 43 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.260 2.483 -28.380 29.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.166 4.166 3 C -0.064 4.064 4 H 0.079 0.921 5 C -0.147 4.147 6 C -0.211 4.211 7 C -0.163 4.163 8 C 0.296 3.704 9 O -0.451 6.451 10 N -0.340 5.340 11 C 0.016 3.984 12 H 0.126 0.874 13 C -0.180 4.180 14 H 0.161 0.839 15 C 0.024 3.976 16 N -0.352 5.352 17 C -0.353 4.353 18 H 0.086 0.914 19 C -0.233 4.233 20 N -0.607 5.607 21 Si 0.776 3.224 22 H -0.198 1.198 23 H -0.235 1.235 24 H -0.194 1.194 25 C -0.001 4.001 26 C -0.203 4.203 27 H 0.148 0.852 28 H 0.099 0.901 29 H 0.109 0.891 30 H 0.131 0.869 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.138 0.862 37 H 0.144 0.856 38 H 0.256 0.744 39 H 0.085 0.915 40 H 0.052 0.948 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 8.356 2.392 -28.220 29.528 hybrid contribution -0.619 -0.770 0.633 1.173 sum 7.737 1.622 -27.587 28.697 Atomic orbital electron populations 1.23698 0.96745 1.00797 1.01072 1.22895 0.95752 0.98308 0.99638 1.20176 0.96653 0.95531 0.94046 0.92137 1.21513 0.97479 1.03321 0.92359 1.21779 0.99964 1.01401 0.97975 1.21773 0.98058 1.07037 0.89470 1.21509 0.89277 0.74391 0.85232 1.90726 1.17049 1.50264 1.87021 1.45279 1.10379 1.74458 1.03858 1.21350 0.95402 1.00999 0.80679 0.87395 1.24195 1.02220 0.95456 0.96112 0.83883 1.21320 0.96129 0.89632 0.90539 1.45667 1.85227 1.02979 1.01300 1.18625 1.32173 1.04777 0.79738 0.91409 1.25623 1.01148 1.00263 0.96270 1.69890 1.48411 1.30664 1.11700 0.85949 0.79432 0.79410 0.77598 1.19837 1.23495 1.19389 1.21622 0.96110 0.92240 0.90164 1.24172 1.02249 0.95165 0.98744 0.85177 0.90122 0.89113 0.86897 0.90188 0.90551 0.93495 0.91750 0.93385 0.86236 0.85623 0.74403 0.91499 0.94789 0.92777 0.92872 0.95351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.14 13.22 67.79 0.90 -3.25 16 2 C -0.15 -2.73 6.76 25.65 0.17 -2.56 16 3 C -0.05 -0.67 1.82 -11.54 -0.02 -0.69 16 4 H 0.06 1.17 7.60 -2.38 -0.02 1.15 16 5 C -0.11 -1.06 5.39 30.60 0.16 -0.90 16 6 C -0.15 -1.76 9.73 71.98 0.70 -1.06 16 7 C -0.12 -1.46 5.16 29.85 0.15 -1.31 16 8 C 0.51 10.91 7.58 87.65 0.66 11.58 16 9 O -0.57 -17.80 13.73 -3.04 -0.04 -17.84 16 10 N -0.69 -13.63 5.56 -442.52 -2.46 -16.09 16 11 C 0.12 3.47 5.97 44.99 0.27 3.74 16 12 H 0.11 3.67 7.40 -2.39 -0.02 3.65 16 13 C -0.16 -4.66 7.06 -9.88 -0.07 -4.73 16 14 H 0.14 3.30 8.14 -2.39 -0.02 3.28 16 15 C 0.15 5.70 7.04 86.53 0.61 6.31 16 16 N -0.63 -30.52 3.19 -688.17 -2.20 -32.72 16 17 C -0.22 -13.10 10.78 84.04 0.91 -12.19 16 18 H 0.07 4.22 8.06 -2.91 -0.02 4.20 16 19 C -0.04 -2.34 5.49 84.86 0.47 -1.87 16 20 N -0.96 -61.32 13.97 21.65 0.30 -61.02 16 21 Si 0.95 48.47 24.49 68.60 1.68 50.15 16 22 H -0.27 -13.12 6.36 99.48 0.63 -12.49 16 23 H -0.31 -15.76 7.11 99.48 0.71 -15.06 16 24 H -0.27 -13.49 6.33 99.48 0.63 -12.86 16 25 C 0.12 5.38 4.49 86.54 0.39 5.77 16 26 C -0.18 -5.89 7.06 -9.88 -0.07 -5.96 16 27 H 0.13 3.67 8.14 -2.39 -0.02 3.65 16 28 H 0.08 1.99 7.83 -2.91 -0.02 1.97 16 29 H 0.09 1.90 8.06 -2.91 -0.02 1.88 16 30 H 0.11 1.79 8.06 -2.91 -0.02 1.77 16 31 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 34 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.05 0.64 7.38 -2.39 -0.02 0.62 16 36 H 0.12 0.88 8.14 -2.39 -0.02 0.87 16 37 H 0.13 0.78 8.14 -2.38 -0.02 0.76 16 38 H 0.42 5.17 8.83 -92.71 -0.82 4.35 16 39 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 42 H 0.05 2.49 5.06 -2.39 -0.01 2.48 16 43 H 0.03 1.28 6.80 -2.39 -0.02 1.27 16 Total: -1.00 -74.47 343.08 2.52 -71.95 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: 0.01 Total: 12.69 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: 5.23 Total: -7.12 kcal Atomic # 7 Polarization: -105.47 SS G_CDS: -4.36 Total: -109.82 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.04 Total: -17.84 kcal Atomic # 14 Polarization: 48.47 SS G_CDS: 1.68 Total: 50.15 kcal Total: -74.47 2.52 -71.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114726055.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.934 kcal (2) G-P(sol) polarization free energy of solvation -74.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds