Wall clock time and date at job start Tue Mar 31 2020 00:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 114.00044 * 2 1 4 4 C 1.52998 * 109.47059 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47499 * 66.71526 * 4 3 2 6 6 C 1.46502 * 119.99721 * 263.98084 * 5 4 3 7 7 C 1.53003 * 109.46846 * 265.76398 * 6 5 4 8 8 C 1.52999 * 109.47041 * 63.82119 * 7 6 5 9 9 C 1.53008 * 109.47029 * 183.81958 * 7 6 5 10 10 C 1.38817 * 120.00170 * 83.97025 * 5 4 3 11 11 C 1.39796 * 119.58624 * 6.20695 * 10 5 4 12 12 C 1.38601 * 119.49111 * 179.78577 * 11 10 5 13 13 C 1.38384 * 118.68129 * 0.47381 * 12 11 10 14 14 C 1.40562 * 119.14945 * 359.75436 * 13 12 11 15 15 C 1.41311 * 119.78607 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99699 * 7.18915 * 15 14 13 17 17 C 1.40026 * 120.00324 * 187.19695 * 15 14 13 18 18 N 1.30743 * 119.99490 * 7.12052 * 17 15 14 19 19 Si 1.86795 * 120.00209 * 187.12198 * 17 15 14 20 20 H 1.48500 * 109.47050 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47471 * 119.99976 * 19 17 15 22 22 H 1.48503 * 109.46840 * 239.99912 * 19 17 15 23 23 N 1.31954 * 119.58325 * 186.47332 * 10 5 4 24 24 H 1.09006 * 109.47045 * 300.00362 * 1 2 3 25 25 H 1.09000 * 109.46826 * 60.00260 * 1 2 3 26 26 H 1.09001 * 109.47094 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47466 * 59.99982 * 3 2 1 28 28 H 1.09003 * 109.46702 * 299.99678 * 3 2 1 29 29 H 1.08999 * 109.47171 * 186.70820 * 4 3 2 30 30 H 1.09001 * 109.47402 * 306.71507 * 4 3 2 31 31 H 1.08999 * 109.47316 * 25.76514 * 6 5 4 32 32 H 1.08998 * 109.47336 * 145.76572 * 6 5 4 33 33 H 1.08996 * 109.47201 * 303.81758 * 7 6 5 34 34 H 1.09000 * 109.47353 * 61.83664 * 8 7 6 35 35 H 1.08999 * 109.46839 * 181.83375 * 8 7 6 36 36 H 1.09004 * 109.46988 * 301.83183 * 8 7 6 37 37 H 1.09001 * 109.46674 * 59.99933 * 9 7 6 38 38 H 1.08998 * 109.46936 * 180.02562 * 9 7 6 39 39 H 1.08996 * 109.46966 * 299.99945 * 9 7 6 40 40 H 1.07997 * 120.25087 * 359.97438 * 11 10 5 41 41 H 1.07997 * 120.65878 * 180.22207 * 12 11 10 42 42 H 1.07995 * 120.42951 * 179.76629 * 13 12 11 43 43 H 0.97004 * 119.99691 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9797 0.6016 -1.2678 6 6 4.2365 -0.8377 -1.3622 7 6 5.7227 -1.1076 -1.1186 8 6 6.0879 -0.6983 0.3097 9 6 6.0086 -2.5984 -1.3109 10 6 4.1572 1.4127 -2.3802 11 6 4.0366 2.7993 -2.2497 12 6 4.2185 3.6077 -3.3607 13 6 4.5064 3.0114 -4.5759 14 6 4.6100 1.6113 -4.6440 15 6 4.9039 0.9883 -5.8779 16 1 5.1624 1.5886 -6.7378 17 6 4.8600 -0.4071 -5.9858 18 7 4.4136 -1.1260 -4.9891 19 14 5.4390 -1.2414 -7.5535 20 1 5.8932 -0.2124 -8.5231 21 1 6.5646 -2.1578 -7.2400 22 1 4.3189 -2.0172 -8.1441 23 7 4.4324 0.8649 -3.5487 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6886 1.8465 0.8900 28 1 1.6886 1.8463 -0.8901 29 1 3.9782 2.1734 0.1207 30 1 3.8488 0.5436 0.8247 31 1 3.6443 -1.3624 -0.6125 32 1 3.9611 -1.1916 -2.3557 33 1 6.3176 -0.5294 -1.8256 34 1 5.5167 -1.2994 1.0172 35 1 7.1534 -0.8602 0.4728 36 1 5.8539 0.3561 0.4567 37 1 5.7483 -2.8898 -2.3284 38 1 7.0673 -2.7907 -1.1369 39 1 5.4137 -3.1765 -0.6039 40 1 3.8064 3.2375 -1.2898 41 1 4.1333 4.6813 -3.2806 42 1 4.6499 3.6140 -5.4605 43 1 4.3835 -2.0927 -5.0637 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116736447.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:58 Heat of formation + Delta-G solvation = -12.573708 kcal Electronic energy + Delta-G solvation = -22880.328697 eV Core-core repulsion = 19732.572302 eV Total energy + Delta-G solvation = -3147.756395 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -38.75244 -37.47977 -36.29382 -34.01806 -33.05965 -30.68429 -29.69428 -28.41175 -26.73084 -26.33992 -25.58886 -24.21760 -22.45085 -21.19222 -20.01954 -19.07235 -17.40728 -16.44259 -15.81639 -15.54024 -15.04005 -14.78086 -14.70176 -14.18557 -13.97119 -13.66276 -13.16431 -13.05129 -12.44854 -12.33094 -12.21607 -11.87109 -11.79192 -11.56278 -11.47904 -11.17657 -11.00773 -10.94624 -10.85966 -10.59451 -10.44109 -10.35110 -10.21337 -9.90560 -9.79143 -9.40209 -9.30263 -8.58763 -7.85254 -7.37627 -6.36469 -6.25692 -4.40349 2.90015 3.14674 3.18635 3.28979 3.33023 3.99839 4.02341 4.13016 4.87450 5.33244 5.41437 5.52462 5.54400 5.58021 5.60157 5.64786 5.71643 5.77693 5.90396 6.04045 6.09877 6.14893 6.18804 6.26528 6.29967 6.34346 6.45841 6.62118 6.69997 6.77010 6.83592 6.92572 6.95635 7.16304 7.27036 7.31203 7.42064 7.66697 7.88779 8.01862 8.11935 8.45975 8.64111 8.87050 9.18083 10.29371 10.45395 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014029 B = 0.006705 C = 0.005804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.421907 B = 4174.802271 C = 4823.122034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.382 6.382 3 C 0.041 3.959 4 C 0.138 3.862 5 N -0.607 5.607 6 C 0.146 3.854 7 C -0.109 4.109 8 C -0.142 4.142 9 C -0.137 4.137 10 C 0.415 3.585 11 C -0.371 4.371 12 C -0.032 4.032 13 C -0.319 4.319 14 C 0.295 3.705 15 C -0.436 4.436 16 H 0.081 0.919 17 C 0.077 3.923 18 N -0.714 5.714 19 Si 0.900 3.100 20 H -0.262 1.262 21 H -0.274 1.274 22 H -0.276 1.276 23 N -0.525 5.525 24 H 0.033 0.967 25 H 0.038 0.962 26 H 0.080 0.920 27 H 0.044 0.956 28 H 0.055 0.945 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.051 0.949 32 H 0.102 0.898 33 H 0.074 0.926 34 H 0.044 0.956 35 H 0.041 0.959 36 H 0.053 0.947 37 H 0.059 0.941 38 H 0.043 0.957 39 H 0.044 0.956 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.524 -1.029 9.252 9.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.300 6.300 3 C -0.038 4.038 4 C 0.013 3.987 5 N -0.323 5.323 6 C 0.022 3.978 7 C -0.129 4.129 8 C -0.199 4.199 9 C -0.195 4.195 10 C 0.176 3.824 11 C -0.396 4.396 12 C -0.056 4.056 13 C -0.343 4.343 14 C 0.168 3.832 15 C -0.468 4.468 16 H 0.099 0.901 17 C -0.148 4.148 18 N -0.335 5.335 19 Si 0.725 3.275 20 H -0.186 1.186 21 H -0.199 1.199 22 H -0.201 1.201 23 N -0.246 5.246 24 H 0.052 0.948 25 H 0.057 0.943 26 H 0.099 0.901 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.070 0.930 32 H 0.120 0.880 33 H 0.092 0.908 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.408 -2.372 9.327 9.920 hybrid contribution -0.109 0.911 -0.561 1.076 sum -2.517 -1.460 8.766 9.236 Atomic orbital electron populations 1.22658 0.82048 1.02159 0.99402 1.87913 1.18815 1.28028 1.95278 1.23215 0.95981 0.84744 0.99811 1.21288 0.90805 0.99483 0.87162 1.45930 1.73078 1.06246 1.07008 1.21257 0.92590 0.80486 1.03420 1.21471 0.99277 0.95888 0.96246 1.21869 0.99838 1.01080 0.97127 1.21694 1.00008 0.96084 1.01755 1.18467 0.89998 0.86380 0.87511 1.20616 1.27664 0.92978 0.98374 1.20566 0.95243 0.96789 0.92988 1.21523 1.19636 0.96304 0.96792 1.18206 0.86494 0.87526 0.91018 1.19549 1.40442 0.91423 0.95427 0.90103 1.25963 0.93773 0.97945 0.97150 1.70070 1.28181 1.06128 1.29152 0.86394 0.79036 0.79701 0.82359 1.18585 1.19932 1.20111 1.68175 1.23960 1.36572 0.95848 0.94814 0.94325 0.90133 0.93815 0.92676 0.90034 0.90677 0.93010 0.88014 0.90771 0.93674 0.94006 0.92784 0.92197 0.93778 0.93644 0.89313 0.89185 0.88957 0.92000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.38 -6.30 10.47 -35.23 -0.37 -6.67 16 3 C 0.04 0.64 6.24 37.16 0.23 0.87 16 4 C 0.14 2.24 4.35 -4.04 -0.02 2.23 16 5 N -0.61 -12.28 2.28 -173.80 -0.40 -12.68 16 6 C 0.15 2.89 4.86 -4.04 -0.02 2.87 16 7 C -0.11 -1.97 3.12 -90.61 -0.28 -2.26 16 8 C -0.14 -2.18 8.34 37.16 0.31 -1.87 16 9 C -0.14 -2.21 9.19 37.16 0.34 -1.87 16 10 C 0.42 9.99 7.33 -155.33 -1.14 8.86 16 11 C -0.37 -8.45 9.18 -38.87 -0.36 -8.81 16 12 C -0.03 -0.73 10.15 -39.39 -0.40 -1.13 16 13 C -0.32 -8.12 9.83 -38.65 -0.38 -8.50 16 14 C 0.29 8.13 6.52 -85.00 -0.55 7.58 16 15 C -0.44 -11.76 9.13 -37.74 -0.34 -12.10 16 16 H 0.08 2.08 7.86 -52.48 -0.41 1.67 16 17 C 0.08 1.94 5.47 -17.35 -0.09 1.85 16 18 N -0.71 -18.44 11.23 55.55 0.62 -17.81 16 19 Si 0.90 18.75 29.57 -169.99 -5.03 13.73 16 20 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 21 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 22 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 23 N -0.52 -14.11 6.73 -10.33 -0.07 -14.18 16 24 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.98 8.03 -51.93 -0.42 0.56 16 29 H 0.08 1.26 6.24 -51.93 -0.32 0.94 16 30 H 0.07 1.11 6.73 -51.93 -0.35 0.76 16 31 H 0.05 0.96 7.84 -51.93 -0.41 0.56 16 32 H 0.10 2.39 7.08 -51.93 -0.37 2.02 16 33 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 34 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.05 0.85 6.18 -51.93 -0.32 0.53 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.09 1.78 6.11 -52.49 -0.32 1.46 16 41 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 42 H 0.09 2.20 8.06 -52.49 -0.42 1.78 16 43 H 0.27 6.35 8.29 -40.82 -0.34 6.01 16 LS Contribution 348.24 15.07 5.25 5.25 Total: -1.00 -28.94 348.24 -8.71 -37.65 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -7.13 Total: 5.44 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: -1.59 Total: -10.73 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: 0.16 Total: -44.67 kcal Atomic # 8 Polarization: -6.30 SS G_CDS: -0.37 Total: -6.67 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -28.94 -8.71 -37.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116736447.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.078 kcal (2) G-P(sol) polarization free energy of solvation -28.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds