Wall clock time and date at job start Tue Mar 31 2020 00:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 114.00044 * 2 1 4 4 C 1.52998 * 109.47059 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47499 * 66.71526 * 4 3 2 6 6 C 1.46502 * 119.99721 * 263.98084 * 5 4 3 7 7 C 1.53003 * 109.46846 * 265.76398 * 6 5 4 8 8 C 1.52999 * 109.47041 * 63.82119 * 7 6 5 9 9 C 1.53008 * 109.47029 * 183.81958 * 7 6 5 10 10 C 1.38817 * 120.00170 * 83.97025 * 5 4 3 11 11 C 1.39796 * 119.58624 * 6.20695 * 10 5 4 12 12 C 1.38601 * 119.49111 * 179.78577 * 11 10 5 13 13 C 1.38384 * 118.68129 * 0.47381 * 12 11 10 14 14 C 1.40562 * 119.14945 * 359.75436 * 13 12 11 15 15 C 1.41311 * 119.78607 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99699 * 7.18915 * 15 14 13 17 17 C 1.40026 * 120.00324 * 187.19695 * 15 14 13 18 18 N 1.30743 * 119.99490 * 7.12052 * 17 15 14 19 19 Si 1.86795 * 120.00209 * 187.12198 * 17 15 14 20 20 H 1.48500 * 109.47050 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47471 * 119.99976 * 19 17 15 22 22 H 1.48503 * 109.46840 * 239.99912 * 19 17 15 23 23 N 1.31954 * 119.58325 * 186.47332 * 10 5 4 24 24 H 1.09006 * 109.47045 * 300.00362 * 1 2 3 25 25 H 1.09000 * 109.46826 * 60.00260 * 1 2 3 26 26 H 1.09001 * 109.47094 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47466 * 59.99982 * 3 2 1 28 28 H 1.09003 * 109.46702 * 299.99678 * 3 2 1 29 29 H 1.08999 * 109.47171 * 186.70820 * 4 3 2 30 30 H 1.09001 * 109.47402 * 306.71507 * 4 3 2 31 31 H 1.08999 * 109.47316 * 25.76514 * 6 5 4 32 32 H 1.08998 * 109.47336 * 145.76572 * 6 5 4 33 33 H 1.08996 * 109.47201 * 303.81758 * 7 6 5 34 34 H 1.09000 * 109.47353 * 61.83664 * 8 7 6 35 35 H 1.08999 * 109.46839 * 181.83375 * 8 7 6 36 36 H 1.09004 * 109.46988 * 301.83183 * 8 7 6 37 37 H 1.09001 * 109.46674 * 59.99933 * 9 7 6 38 38 H 1.08998 * 109.46936 * 180.02562 * 9 7 6 39 39 H 1.08996 * 109.46966 * 299.99945 * 9 7 6 40 40 H 1.07997 * 120.25087 * 359.97438 * 11 10 5 41 41 H 1.07997 * 120.65878 * 180.22207 * 12 11 10 42 42 H 1.07995 * 120.42951 * 179.76629 * 13 12 11 43 43 H 0.97004 * 119.99691 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9797 0.6016 -1.2678 6 6 4.2365 -0.8377 -1.3622 7 6 5.7227 -1.1076 -1.1186 8 6 6.0879 -0.6983 0.3097 9 6 6.0086 -2.5984 -1.3109 10 6 4.1572 1.4127 -2.3802 11 6 4.0366 2.7993 -2.2497 12 6 4.2185 3.6077 -3.3607 13 6 4.5064 3.0114 -4.5759 14 6 4.6100 1.6113 -4.6440 15 6 4.9039 0.9883 -5.8779 16 1 5.1624 1.5886 -6.7378 17 6 4.8600 -0.4071 -5.9858 18 7 4.4136 -1.1260 -4.9891 19 14 5.4390 -1.2414 -7.5535 20 1 5.8932 -0.2124 -8.5231 21 1 6.5646 -2.1578 -7.2400 22 1 4.3189 -2.0172 -8.1441 23 7 4.4324 0.8649 -3.5487 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6886 1.8465 0.8900 28 1 1.6886 1.8463 -0.8901 29 1 3.9782 2.1734 0.1207 30 1 3.8488 0.5436 0.8247 31 1 3.6443 -1.3624 -0.6125 32 1 3.9611 -1.1916 -2.3557 33 1 6.3176 -0.5294 -1.8256 34 1 5.5167 -1.2994 1.0172 35 1 7.1534 -0.8602 0.4728 36 1 5.8539 0.3561 0.4567 37 1 5.7483 -2.8898 -2.3284 38 1 7.0673 -2.7907 -1.1369 39 1 5.4137 -3.1765 -0.6039 40 1 3.8064 3.2375 -1.2898 41 1 4.1333 4.6813 -3.2806 42 1 4.6499 3.6140 -5.4605 43 1 4.3835 -2.0927 -5.0637 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116736447.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:58 Heat of formation + Delta-G solvation = -27.536368 kcal Electronic energy + Delta-G solvation = -22880.977526 eV Core-core repulsion = 19732.572302 eV Total energy + Delta-G solvation = -3148.405225 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.43405 -38.88199 -37.80352 -35.68346 -34.76171 -32.44684 -31.42590 -29.99108 -28.01060 -27.81499 -27.07326 -25.81769 -23.92540 -23.04776 -21.60299 -20.65636 -19.27269 -17.89880 -17.17185 -17.07542 -16.46389 -16.37700 -16.24220 -15.81149 -15.58692 -15.10947 -14.76950 -14.60077 -14.06906 -13.90883 -13.69623 -13.22967 -13.06145 -12.96639 -12.80142 -12.76807 -12.67932 -12.51697 -12.41969 -12.16676 -12.06213 -11.86350 -11.70303 -11.59504 -11.32548 -11.15456 -10.57973 -10.35785 -9.75505 -9.28080 -8.23416 -8.01108 -6.39921 1.09901 1.40876 1.41687 1.55288 1.57846 2.26575 2.49776 2.93022 2.98529 4.07013 4.07846 4.18659 4.23800 4.26958 4.33139 4.40331 4.46773 4.52807 4.54656 4.60820 4.74126 4.81839 4.82690 4.84574 4.88452 4.95630 5.02296 5.04471 5.05629 5.13380 5.21818 5.31615 5.39185 5.41876 5.61413 5.63850 5.80826 6.02525 6.17034 6.23471 6.29479 6.69951 6.78431 6.97624 7.28911 8.41035 8.56394 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014029 B = 0.006705 C = 0.005804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.421907 B = 4174.802271 C = 4823.122034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.407 6.407 3 C 0.046 3.954 4 C 0.132 3.868 5 N -0.605 5.605 6 C 0.153 3.847 7 C -0.102 4.102 8 C -0.132 4.132 9 C -0.131 4.131 10 C 0.399 3.601 11 C -0.368 4.368 12 C -0.030 4.030 13 C -0.351 4.351 14 C 0.261 3.739 15 C -0.474 4.474 16 H 0.079 0.921 17 C 0.034 3.966 18 N -0.741 5.741 19 Si 0.977 3.023 20 H -0.259 1.259 21 H -0.268 1.268 22 H -0.267 1.267 23 N -0.551 5.551 24 H 0.060 0.940 25 H 0.027 0.973 26 H 0.092 0.908 27 H 0.081 0.919 28 H 0.027 0.973 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.027 0.973 34 H 0.067 0.933 35 H 0.053 0.947 36 H 0.049 0.951 37 H 0.036 0.964 38 H 0.058 0.942 39 H 0.068 0.932 40 H 0.121 0.879 41 H 0.125 0.875 42 H 0.095 0.905 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.704 -1.281 11.383 11.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.326 6.326 3 C -0.032 4.032 4 C 0.009 3.991 5 N -0.319 5.319 6 C 0.029 3.971 7 C -0.123 4.123 8 C -0.190 4.190 9 C -0.189 4.189 10 C 0.159 3.841 11 C -0.393 4.393 12 C -0.055 4.055 13 C -0.374 4.374 14 C 0.134 3.866 15 C -0.506 4.506 16 H 0.097 0.903 17 C -0.189 4.189 18 N -0.363 5.363 19 Si 0.798 3.202 20 H -0.183 1.183 21 H -0.193 1.193 22 H -0.192 1.192 23 N -0.272 5.272 24 H 0.078 0.922 25 H 0.046 0.954 26 H 0.111 0.889 27 H 0.099 0.901 28 H 0.046 0.954 29 H 0.111 0.889 30 H 0.115 0.885 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.046 0.954 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.055 0.945 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.138 0.862 41 H 0.143 0.857 42 H 0.113 0.887 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.607 -2.613 11.503 12.081 hybrid contribution -0.131 1.027 -1.080 1.496 sum -2.739 -1.587 10.423 10.893 Atomic orbital electron populations 1.22824 0.80354 1.03313 1.00134 1.87864 1.20759 1.28569 1.95445 1.23145 0.95228 0.84640 1.00217 1.21594 0.91549 1.00343 0.85655 1.46129 1.72400 1.06110 1.07309 1.21120 0.93947 0.80530 1.01485 1.21343 0.97182 0.96569 0.97172 1.21773 1.00978 1.01113 0.95090 1.21634 1.01368 0.94871 1.01020 1.18916 0.89605 0.87715 0.87889 1.20982 1.26149 0.92559 0.99647 1.20958 0.93698 0.98676 0.92138 1.21659 1.21700 0.95847 0.98179 1.18660 0.87289 0.88845 0.91802 1.19824 1.42376 0.92748 0.95627 0.90269 1.26773 0.93537 0.97942 1.00599 1.70170 1.28561 1.06539 1.30984 0.85243 0.78622 0.78371 0.77927 1.18307 1.19339 1.19213 1.68153 1.24992 1.37380 0.96697 0.92162 0.95417 0.88913 0.90075 0.95434 0.88898 0.88462 0.91430 0.92233 0.95443 0.91433 0.92835 0.93187 0.94505 0.92296 0.91347 0.86167 0.85708 0.88661 0.91510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 11.01 113.37 1.25 1.96 16 2 O -0.41 -12.64 10.47 -148.98 -1.56 -14.20 16 3 C 0.05 1.31 6.24 71.98 0.45 1.76 16 4 C 0.13 3.98 4.35 86.38 0.38 4.35 16 5 N -0.60 -24.25 2.28 -703.79 -1.61 -25.85 16 6 C 0.15 6.09 4.86 86.38 0.42 6.51 16 7 C -0.10 -3.71 3.12 -10.79 -0.03 -3.74 16 8 C -0.13 -3.75 8.34 71.98 0.60 -3.15 16 9 C -0.13 -4.14 9.19 71.98 0.66 -3.47 16 10 C 0.40 19.47 7.33 133.42 0.98 20.45 16 11 C -0.37 -16.50 9.18 22.73 0.21 -16.29 16 12 C -0.03 -1.40 10.15 22.39 0.23 -1.17 16 13 C -0.35 -18.39 9.83 22.87 0.22 -18.16 16 14 C 0.26 15.12 6.52 40.18 0.26 15.38 16 15 C -0.47 -26.81 9.13 23.46 0.21 -26.60 16 16 H 0.08 4.29 7.86 -2.91 -0.02 4.27 16 17 C 0.03 1.78 5.47 85.29 0.47 2.25 16 18 N -0.74 -40.02 11.23 21.84 0.25 -39.77 16 19 Si 0.98 39.66 29.57 68.60 2.03 41.68 16 20 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 21 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 22 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 23 N -0.55 -30.88 6.73 -186.59 -1.26 -32.14 16 24 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 25 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.09 1.94 8.14 -2.39 -0.02 1.93 16 27 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.03 0.94 8.03 -2.39 -0.02 0.92 16 29 H 0.09 2.58 6.24 -2.39 -0.01 2.57 16 30 H 0.10 2.52 6.73 -2.39 -0.02 2.50 16 31 H 0.07 2.44 7.84 -2.39 -0.02 2.42 16 32 H 0.06 2.91 7.08 -2.39 -0.02 2.89 16 33 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.05 1.45 6.18 -2.38 -0.01 1.43 16 37 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.12 4.53 6.11 -2.91 -0.02 4.51 16 41 H 0.13 4.74 8.06 -2.91 -0.02 4.72 16 42 H 0.10 4.74 8.06 -2.91 -0.02 4.71 16 43 H 0.27 13.51 8.29 -92.71 -0.77 12.74 16 Total: -1.00 -66.38 348.24 5.12 -61.26 By element: Atomic # 1 Polarization: 27.97 SS G_CDS: 0.97 Total: 28.94 kcal Atomic # 6 Polarization: -26.22 SS G_CDS: 6.30 Total: -19.92 kcal Atomic # 7 Polarization: -95.15 SS G_CDS: -2.62 Total: -97.77 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: -1.56 Total: -14.20 kcal Atomic # 14 Polarization: 39.66 SS G_CDS: 2.03 Total: 41.68 kcal Total: -66.38 5.12 -61.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116736447.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.720 kcal (2) G-P(sol) polarization free energy of solvation -66.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds