Wall clock time and date at job start Mon Mar 30 2020 23:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32994 * 119.99865 * 2 1 4 4 C 1.50699 * 120.00231 * 179.97438 * 3 2 1 5 5 C 1.47102 * 120.00004 * 359.97438 * 3 2 1 6 6 O 1.21615 * 119.99973 * 0.02562 * 5 3 2 7 7 N 1.34771 * 120.00211 * 180.02562 * 5 3 2 8 8 C 1.46495 * 120.00351 * 179.97438 * 7 5 3 9 9 C 1.53954 * 113.58384 * 204.99984 * 8 7 5 10 10 C 1.52906 * 86.88484 * 220.70894 * 9 8 7 11 11 C 1.52907 * 121.13720 * 259.13292 * 10 9 8 12 12 C 1.53956 * 86.78503 * 209.38073 * 11 10 9 13 13 N 1.46495 * 113.57945 * 139.33529 * 12 11 10 14 14 C 1.36935 * 120.00030 * 107.28233 * 13 12 11 15 15 H 1.07999 * 120.00248 * 359.97438 * 14 13 12 16 16 C 1.38812 * 119.99900 * 179.97438 * 14 13 12 17 17 N 1.31624 * 119.99722 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 120.00401 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.46927 * 89.99672 * 18 16 14 20 20 H 1.48501 * 109.47276 * 209.99831 * 18 16 14 21 21 H 1.48501 * 109.46956 * 330.00385 * 18 16 14 22 22 C 1.52908 * 121.14082 * 150.57014 * 10 9 8 23 23 C 1.52914 * 88.04381 * 24.84955 * 10 9 8 24 24 H 1.09002 * 109.46884 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47697 * 300.00253 * 1 2 3 26 26 H 1.08994 * 109.47129 * 60.00900 * 1 2 3 27 27 H 1.07991 * 120.00021 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.46696 * 270.00019 * 4 3 2 29 29 H 1.09001 * 109.46968 * 29.99248 * 4 3 2 30 30 H 1.08993 * 109.47121 * 149.99262 * 4 3 2 31 31 H 0.97000 * 120.00002 * 359.97438 * 7 5 3 32 32 H 1.08999 * 112.87960 * 336.13871 * 8 7 5 33 33 H 1.09002 * 113.66501 * 106.18821 * 9 8 7 34 34 H 1.08998 * 113.66098 * 335.22640 * 9 8 7 35 35 H 1.09005 * 113.66022 * 323.85208 * 11 10 9 36 36 H 1.09001 * 113.66746 * 94.90349 * 11 10 9 37 37 H 1.08994 * 113.57689 * 270.12977 * 12 11 10 38 38 H 0.97001 * 120.00090 * 287.27674 * 13 12 11 39 39 H 0.97004 * 119.99958 * 179.97438 * 17 16 14 40 40 H 1.08994 * 113.66294 * 265.09463 * 22 10 9 41 41 H 1.09005 * 113.66080 * 36.04858 * 22 10 9 42 42 H 1.08998 * 113.65700 * 89.57276 * 23 10 9 43 43 H 1.08999 * 113.66069 * 220.53570 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 3.6789 1.1519 0.0006 5 6 1.4364 2.4257 -0.0006 6 8 0.2202 2.4257 -0.0006 7 7 2.1102 3.5929 -0.0011 8 6 1.3777 4.8616 -0.0022 9 6 2.1774 6.0340 -0.5990 10 6 1.6045 6.8906 0.5306 11 6 0.4279 7.8363 0.2870 12 6 1.0118 8.7126 1.4100 13 7 0.9457 10.1485 1.1273 14 6 0.0484 10.9374 1.7964 15 1 -0.6108 10.5010 2.5322 16 6 -0.0139 12.2981 1.5289 17 7 -0.8767 13.0563 2.1716 18 14 1.1267 13.0531 0.2568 19 1 0.4757 13.0135 -1.0773 20 1 1.4153 14.4625 0.6251 21 1 2.3959 12.2835 0.2112 22 6 2.3801 8.0841 1.0893 23 6 1.4324 5.6081 1.3453 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 2.0469 -0.9352 0.0004 28 1 4.0418 1.1521 1.0284 29 1 4.0425 0.2617 -0.5128 30 1 4.0424 2.0416 -0.5134 31 1 3.0802 3.5930 -0.0007 32 1 0.3706 4.7691 -0.4088 33 1 1.8391 6.3345 -1.5907 34 1 3.2577 5.9005 -0.5420 35 1 0.4452 8.3126 -0.6934 36 1 -0.5412 7.4009 0.5308 37 1 0.6367 8.4581 2.4013 38 1 1.5375 10.5404 0.4663 39 1 -0.9200 14.0072 1.9850 40 1 2.9706 7.8466 1.9740 41 1 2.9474 8.6291 0.3347 42 1 2.3032 5.3537 1.9496 43 1 0.4998 5.5691 1.9081 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120906994.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:36 Heat of formation + Delta-G solvation = 29.603521 kcal Electronic energy + Delta-G solvation = -21272.755595 eV Core-core repulsion = 18126.828142 eV Total energy + Delta-G solvation = -3145.927453 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.68631 -39.52273 -36.16781 -35.14231 -33.80963 -32.28893 -30.40886 -29.82068 -25.81419 -25.43327 -25.29625 -24.36975 -23.15732 -21.32407 -20.29868 -19.46753 -17.90963 -17.28867 -16.61634 -16.19180 -15.48359 -15.06457 -14.90862 -14.57864 -14.24281 -14.01741 -13.60263 -13.36973 -13.04086 -12.88591 -12.67317 -12.62824 -12.53519 -12.23195 -12.02183 -11.76646 -11.75674 -11.60273 -11.31507 -10.97119 -10.79521 -10.21128 -10.07856 -9.81631 -9.77240 -9.64160 -9.45218 -9.41014 -8.96993 -8.86943 -7.24636 -5.76574 -3.11781 1.13378 3.06545 3.10594 3.37514 3.40340 3.45365 4.42859 4.51919 4.54055 4.59142 4.60717 4.74098 4.85468 4.88274 5.06235 5.19113 5.26225 5.36192 5.40140 5.52311 5.54062 5.62847 5.63597 5.67182 5.79816 5.81520 5.83170 5.88371 6.03923 6.11846 6.16820 6.17454 6.24516 6.29816 6.31070 6.51866 6.58983 6.81889 7.01988 7.41273 8.00796 8.11295 8.43465 9.21469 9.94134 10.14340 11.41820 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.043815 B = 0.002901 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.902619 B = 9650.309275 C = 9965.374193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.069 4.069 3 C -0.200 4.200 4 C -0.114 4.114 5 C 0.548 3.452 6 O -0.537 6.537 7 N -0.717 5.717 8 C 0.124 3.876 9 C -0.131 4.131 10 C -0.101 4.101 11 C -0.142 4.142 12 C 0.174 3.826 13 N -0.738 5.738 14 C -0.246 4.246 15 H 0.091 0.909 16 C 0.003 3.997 17 N -0.934 5.934 18 Si 0.885 3.115 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.277 1.277 22 C -0.139 4.139 23 C -0.124 4.124 24 H 0.050 0.950 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.123 0.877 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.398 0.602 32 H 0.114 0.886 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.083 0.917 38 H 0.362 0.638 39 H 0.259 0.741 40 H 0.062 0.938 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.720 -26.010 -5.799 28.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.089 4.089 3 C -0.203 4.203 4 C -0.171 4.171 5 C 0.337 3.663 6 O -0.416 6.416 7 N -0.367 5.367 8 C 0.019 3.981 9 C -0.169 4.169 10 C -0.103 4.103 11 C -0.182 4.182 12 C 0.063 3.937 13 N -0.378 5.378 14 C -0.376 4.376 15 H 0.109 0.891 16 C -0.192 4.192 17 N -0.582 5.582 18 Si 0.715 3.285 19 H -0.211 1.211 20 H -0.217 1.217 21 H -0.203 1.203 22 C -0.178 4.178 23 C -0.163 4.163 24 H 0.069 0.931 25 H 0.100 0.900 26 H 0.100 0.900 27 H 0.140 0.860 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.234 0.766 32 H 0.132 0.868 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.101 0.899 38 H 0.195 0.805 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.095 0.905 42 H 0.101 0.899 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.658 -25.855 -5.630 28.169 hybrid contribution 1.375 0.662 -0.931 1.788 sum 11.033 -25.193 -6.560 28.275 Atomic orbital electron populations 1.21037 0.91668 1.00930 1.04299 1.23635 0.97322 0.96608 0.91344 1.21506 0.96352 0.93356 1.09080 1.20760 0.91007 1.02843 1.02473 1.18448 0.87355 0.84203 0.76278 1.90793 1.13569 1.87559 1.49710 1.46017 1.10054 1.05645 1.75010 1.22612 0.97407 0.80502 0.97541 1.23176 0.99585 0.95088 0.99091 1.22083 0.99531 0.92379 0.96270 1.23567 0.95883 0.96823 1.01975 1.21522 0.92693 0.83273 0.96199 1.42771 1.43953 1.03461 1.47571 1.19156 1.11718 0.89755 1.16966 0.89140 1.24701 0.98903 0.96126 0.99519 1.69709 1.38373 1.05388 1.44684 0.86541 0.81086 0.78728 0.82139 1.21084 1.21744 1.20321 1.23287 0.98394 0.95926 1.00178 1.23174 1.02540 0.94201 0.96359 0.93076 0.90010 0.90050 0.85956 0.91074 0.91227 0.91760 0.76642 0.86783 0.90869 0.89996 0.90224 0.92028 0.89947 0.80517 0.93067 0.91943 0.90464 0.89929 0.90777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.12 8.45 36.00 0.30 -0.81 16 2 C -0.07 -0.54 9.95 -36.13 -0.36 -0.90 16 3 C -0.20 -1.71 6.00 -102.85 -0.62 -2.32 16 4 C -0.11 -0.62 9.61 36.00 0.35 -0.27 16 5 C 0.55 6.28 7.72 -12.67 -0.10 6.18 16 6 O -0.54 -7.94 12.67 5.26 0.07 -7.87 16 7 N -0.72 -7.06 5.30 -53.93 -0.29 -7.34 16 8 C 0.12 1.43 4.25 -66.84 -0.28 1.14 16 9 C -0.13 -1.44 7.59 -26.28 -0.20 -1.64 16 10 C -0.10 -1.35 1.11 -154.71 -0.17 -1.53 16 11 C -0.14 -2.35 7.64 -26.28 -0.20 -2.55 16 12 C 0.17 3.33 4.48 -66.95 -0.30 3.03 16 13 N -0.74 -17.51 5.20 -52.48 -0.27 -17.78 16 14 C -0.25 -6.98 10.45 -15.06 -0.16 -7.14 16 15 H 0.09 2.75 8.06 -52.49 -0.42 2.32 16 16 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 17 N -0.93 -29.54 13.97 55.49 0.78 -28.76 16 18 Si 0.88 22.18 27.73 -169.99 -4.71 17.46 16 19 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 21 H -0.28 -6.51 6.52 56.52 0.37 -6.14 16 22 C -0.14 -2.11 7.59 -26.28 -0.20 -2.31 16 23 C -0.12 -1.51 7.65 -26.18 -0.20 -1.71 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.08 0.89 7.22 -51.93 -0.37 0.51 16 26 H 0.08 0.87 7.22 -51.93 -0.37 0.50 16 27 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.30 8.07 -51.93 -0.42 -0.12 16 30 H 0.06 0.30 6.70 -51.93 -0.35 -0.05 16 31 H 0.40 2.90 6.83 -40.82 -0.28 2.62 16 32 H 0.11 1.54 7.47 -51.93 -0.39 1.15 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 0.77 8.12 -51.93 -0.42 0.35 16 35 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.08 1.63 8.10 -51.93 -0.42 1.21 16 38 H 0.36 8.41 5.79 -40.82 -0.24 8.17 16 39 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.08 1.18 8.12 -51.93 -0.42 0.76 16 42 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 346.78 15.07 5.23 5.23 Total: -1.00 -32.82 346.78 -8.52 -41.34 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -7.08 Total: 8.58 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: -2.23 Total: -10.84 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: 0.22 Total: -53.89 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: 0.07 Total: -7.87 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.71 Total: 17.46 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.82 -8.52 -41.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120906994.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.940 kcal (2) G-P(sol) polarization free energy of solvation -32.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds