Wall clock time and date at job start Mon Mar 30 2020 23:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32994 * 119.99865 * 2 1 4 4 C 1.50699 * 120.00231 * 179.97438 * 3 2 1 5 5 C 1.47102 * 120.00004 * 359.97438 * 3 2 1 6 6 O 1.21615 * 119.99973 * 0.02562 * 5 3 2 7 7 N 1.34771 * 120.00211 * 180.02562 * 5 3 2 8 8 C 1.46495 * 120.00351 * 179.97438 * 7 5 3 9 9 C 1.53954 * 113.58384 * 204.99984 * 8 7 5 10 10 C 1.52906 * 86.88484 * 220.70894 * 9 8 7 11 11 C 1.52907 * 121.13720 * 259.13292 * 10 9 8 12 12 C 1.53956 * 86.78503 * 209.38073 * 11 10 9 13 13 N 1.46495 * 113.57945 * 139.33529 * 12 11 10 14 14 C 1.36935 * 120.00030 * 107.28233 * 13 12 11 15 15 H 1.07999 * 120.00248 * 359.97438 * 14 13 12 16 16 C 1.38812 * 119.99900 * 179.97438 * 14 13 12 17 17 N 1.31624 * 119.99722 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 120.00401 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.46927 * 89.99672 * 18 16 14 20 20 H 1.48501 * 109.47276 * 209.99831 * 18 16 14 21 21 H 1.48501 * 109.46956 * 330.00385 * 18 16 14 22 22 C 1.52908 * 121.14082 * 150.57014 * 10 9 8 23 23 C 1.52914 * 88.04381 * 24.84955 * 10 9 8 24 24 H 1.09002 * 109.46884 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47697 * 300.00253 * 1 2 3 26 26 H 1.08994 * 109.47129 * 60.00900 * 1 2 3 27 27 H 1.07991 * 120.00021 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.46696 * 270.00019 * 4 3 2 29 29 H 1.09001 * 109.46968 * 29.99248 * 4 3 2 30 30 H 1.08993 * 109.47121 * 149.99262 * 4 3 2 31 31 H 0.97000 * 120.00002 * 359.97438 * 7 5 3 32 32 H 1.08999 * 112.87960 * 336.13871 * 8 7 5 33 33 H 1.09002 * 113.66501 * 106.18821 * 9 8 7 34 34 H 1.08998 * 113.66098 * 335.22640 * 9 8 7 35 35 H 1.09005 * 113.66022 * 323.85208 * 11 10 9 36 36 H 1.09001 * 113.66746 * 94.90349 * 11 10 9 37 37 H 1.08994 * 113.57689 * 270.12977 * 12 11 10 38 38 H 0.97001 * 120.00090 * 287.27674 * 13 12 11 39 39 H 0.97004 * 119.99958 * 179.97438 * 17 16 14 40 40 H 1.08994 * 113.66294 * 265.09463 * 22 10 9 41 41 H 1.09005 * 113.66080 * 36.04858 * 22 10 9 42 42 H 1.08998 * 113.65700 * 89.57276 * 23 10 9 43 43 H 1.08999 * 113.66069 * 220.53570 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 3.6789 1.1519 0.0006 5 6 1.4364 2.4257 -0.0006 6 8 0.2202 2.4257 -0.0006 7 7 2.1102 3.5929 -0.0011 8 6 1.3777 4.8616 -0.0022 9 6 2.1774 6.0340 -0.5990 10 6 1.6045 6.8906 0.5306 11 6 0.4279 7.8363 0.2870 12 6 1.0118 8.7126 1.4100 13 7 0.9457 10.1485 1.1273 14 6 0.0484 10.9374 1.7964 15 1 -0.6108 10.5010 2.5322 16 6 -0.0139 12.2981 1.5289 17 7 -0.8767 13.0563 2.1716 18 14 1.1267 13.0531 0.2568 19 1 0.4757 13.0135 -1.0773 20 1 1.4153 14.4625 0.6251 21 1 2.3959 12.2835 0.2112 22 6 2.3801 8.0841 1.0893 23 6 1.4324 5.6081 1.3453 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 2.0469 -0.9352 0.0004 28 1 4.0418 1.1521 1.0284 29 1 4.0425 0.2617 -0.5128 30 1 4.0424 2.0416 -0.5134 31 1 3.0802 3.5930 -0.0007 32 1 0.3706 4.7691 -0.4088 33 1 1.8391 6.3345 -1.5907 34 1 3.2577 5.9005 -0.5420 35 1 0.4452 8.3126 -0.6934 36 1 -0.5412 7.4009 0.5308 37 1 0.6367 8.4581 2.4013 38 1 1.5375 10.5404 0.4663 39 1 -0.9200 14.0072 1.9850 40 1 2.9706 7.8466 1.9740 41 1 2.9474 8.6291 0.3347 42 1 2.3032 5.3537 1.9496 43 1 0.4998 5.5691 1.9081 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120906994.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:35 Heat of formation + Delta-G solvation = 8.103458 kcal Electronic energy + Delta-G solvation = -21273.687907 eV Core-core repulsion = 18126.828142 eV Total energy + Delta-G solvation = -3146.859766 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.72672 -40.51862 -37.44969 -35.87408 -35.34720 -33.78178 -32.09518 -30.62997 -26.77654 -26.61402 -26.30064 -25.73468 -24.42491 -22.51099 -21.59115 -20.41950 -19.66987 -18.67117 -17.50066 -17.01883 -16.92434 -16.28435 -16.03627 -15.77089 -15.45813 -15.01901 -14.85751 -14.62302 -14.11869 -13.86063 -13.66897 -13.59688 -13.47969 -13.33537 -13.21907 -13.03420 -12.90788 -12.81373 -12.39133 -12.37249 -12.28870 -12.01325 -11.85189 -11.29235 -11.08444 -10.94868 -10.81696 -10.49773 -10.16304 -9.74761 -9.27604 -8.03025 -5.36134 0.45779 1.37127 1.41640 1.48976 2.26701 2.30563 2.48420 3.26871 3.44812 3.50473 3.65621 3.76072 3.85210 3.88723 3.97963 4.08419 4.27193 4.38566 4.44404 4.57713 4.59672 4.78203 4.79941 4.81149 4.84815 4.91114 4.92515 4.97675 5.02613 5.06732 5.08048 5.13041 5.25811 5.28753 5.46710 5.52375 5.60982 5.64545 5.70597 5.77916 6.22587 6.64801 7.07646 7.30951 7.84993 8.04948 9.18828 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.043815 B = 0.002901 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.902619 B = 9650.309275 C = 9965.374193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.067 4.067 3 C -0.208 4.208 4 C -0.110 4.110 5 C 0.537 3.463 6 O -0.581 6.581 7 N -0.703 5.703 8 C 0.126 3.874 9 C -0.113 4.113 10 C -0.090 4.090 11 C -0.141 4.141 12 C 0.148 3.852 13 N -0.742 5.742 14 C -0.235 4.235 15 H 0.052 0.948 16 C -0.069 4.069 17 N -0.987 5.987 18 Si 0.960 3.040 19 H -0.279 1.279 20 H -0.296 1.296 21 H -0.247 1.247 22 C -0.121 4.121 23 C -0.122 4.122 24 H 0.072 0.928 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.157 0.843 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.414 0.586 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.113 0.887 35 H 0.077 0.923 36 H 0.049 0.951 37 H 0.065 0.935 38 H 0.367 0.633 39 H 0.258 0.742 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.103 0.897 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.492 -28.083 -7.398 32.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.087 4.087 3 C -0.211 4.211 4 C -0.167 4.167 5 C 0.327 3.673 6 O -0.463 6.463 7 N -0.355 5.355 8 C 0.021 3.979 9 C -0.151 4.151 10 C -0.092 4.092 11 C -0.181 4.181 12 C 0.039 3.961 13 N -0.383 5.383 14 C -0.366 4.366 15 H 0.070 0.930 16 C -0.260 4.260 17 N -0.637 5.637 18 Si 0.786 3.214 19 H -0.205 1.205 20 H -0.223 1.223 21 H -0.172 1.172 22 C -0.159 4.159 23 C -0.160 4.160 24 H 0.091 0.909 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.175 0.825 28 H 0.098 0.902 29 H 0.104 0.896 30 H 0.091 0.909 31 H 0.253 0.747 32 H 0.106 0.894 33 H 0.094 0.906 34 H 0.131 0.869 35 H 0.096 0.904 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.201 0.799 39 H 0.066 0.934 40 H 0.096 0.904 41 H 0.105 0.895 42 H 0.122 0.878 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 13.495 -27.997 -7.239 31.911 hybrid contribution 0.074 1.202 -0.347 1.254 sum 13.569 -26.794 -7.587 30.978 Atomic orbital electron populations 1.20963 0.93240 1.01552 1.02145 1.23913 0.96427 0.97970 0.90371 1.21677 0.98090 0.91824 1.09511 1.20809 0.88284 1.04164 1.03430 1.19089 0.87110 0.85565 0.75501 1.90784 1.15605 1.88226 1.51716 1.45864 1.10771 1.04631 1.74225 1.22349 0.96811 0.81668 0.97064 1.23132 1.01108 0.92903 0.97975 1.21879 0.97163 0.92128 0.97997 1.23426 0.96843 0.97270 1.00572 1.21890 0.96572 0.81294 0.96308 1.42741 1.43248 1.04907 1.47443 1.19109 1.11384 0.90346 1.15748 0.92965 1.25589 1.01228 0.96696 1.02487 1.69906 1.40966 1.05608 1.47227 0.85338 0.79818 0.77404 0.78792 1.20538 1.22259 1.17174 1.23137 0.96147 0.95572 1.01067 1.23217 1.02572 0.93572 0.96684 0.90917 0.92414 0.92253 0.82520 0.90178 0.89554 0.90867 0.74709 0.89370 0.90622 0.86899 0.90449 0.93194 0.91712 0.79883 0.93363 0.90400 0.89511 0.87834 0.92653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.20 8.45 71.24 0.60 -1.60 16 2 C -0.07 -0.92 9.95 24.52 0.24 -0.67 16 3 C -0.21 -3.08 6.00 -18.70 -0.11 -3.20 16 4 C -0.11 -0.78 9.61 71.24 0.68 -0.09 16 5 C 0.54 11.78 7.72 86.57 0.67 12.44 16 6 O -0.58 -17.65 12.67 -4.08 -0.05 -17.70 16 7 N -0.70 -12.28 5.30 -442.80 -2.35 -14.63 16 8 C 0.13 2.71 4.25 45.70 0.19 2.91 16 9 C -0.11 -2.10 7.59 30.88 0.23 -1.87 16 10 C -0.09 -2.23 1.11 -52.31 -0.06 -2.29 16 11 C -0.14 -4.63 7.64 30.89 0.24 -4.39 16 12 C 0.15 5.64 4.48 45.63 0.20 5.84 16 13 N -0.74 -35.02 5.20 -319.94 -1.67 -36.68 16 14 C -0.23 -13.71 10.45 84.03 0.88 -12.83 16 15 H 0.05 3.37 8.06 -2.91 -0.02 3.34 16 16 C -0.07 -4.14 5.50 84.86 0.47 -3.68 16 17 N -0.99 -64.52 13.97 21.65 0.30 -64.22 16 18 Si 0.96 45.84 27.73 68.60 1.90 47.74 16 19 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 20 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 21 H -0.25 -10.48 6.52 99.48 0.65 -9.83 16 22 C -0.12 -3.34 7.59 30.88 0.23 -3.10 16 23 C -0.12 -2.77 7.65 30.95 0.24 -2.53 16 24 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.06 1.31 7.22 -2.39 -0.02 1.29 16 26 H 0.06 1.32 7.22 -2.39 -0.02 1.31 16 27 H 0.16 1.02 8.06 -2.92 -0.02 1.00 16 28 H 0.08 0.45 8.14 -2.39 -0.02 0.44 16 29 H 0.09 0.36 8.07 -2.39 -0.02 0.34 16 30 H 0.07 0.38 6.70 -2.39 -0.02 0.37 16 31 H 0.41 4.48 6.83 -92.71 -0.63 3.85 16 32 H 0.09 2.41 7.47 -2.39 -0.02 2.39 16 33 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.11 1.49 8.12 -2.39 -0.02 1.47 16 35 H 0.08 2.59 8.14 -2.38 -0.02 2.57 16 36 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.06 2.65 8.10 -2.39 -0.02 2.63 16 38 H 0.37 16.36 5.79 -92.71 -0.54 15.83 16 39 H 0.26 16.00 8.31 -92.70 -0.77 15.23 16 40 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.09 2.30 8.12 -2.38 -0.02 2.28 16 42 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -75.25 346.78 2.63 -72.62 By element: Atomic # 1 Polarization: 28.15 SS G_CDS: -0.23 Total: 27.92 kcal Atomic # 6 Polarization: -19.77 SS G_CDS: 4.71 Total: -15.05 kcal Atomic # 7 Polarization: -111.82 SS G_CDS: -3.71 Total: -115.53 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.05 Total: -17.70 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 1.90 Total: 47.74 kcal Total: -75.25 2.63 -72.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120906994.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.727 kcal (2) G-P(sol) polarization free energy of solvation -75.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds