Wall clock time and date at job start Mon Mar 30 2020 23:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32984 * 120.00145 * 2 1 4 4 C 1.50699 * 120.00279 * 359.97438 * 3 2 1 5 5 C 1.47108 * 120.00181 * 179.97438 * 3 2 1 6 6 O 1.21616 * 119.99659 * 359.97438 * 5 3 2 7 7 N 1.34773 * 120.00203 * 179.97438 * 5 3 2 8 8 C 1.46495 * 120.00009 * 179.97438 * 7 5 3 9 9 C 1.53948 * 113.58234 * 204.99994 * 8 7 5 10 10 C 1.52908 * 86.78752 * 220.66773 * 9 8 7 11 11 C 1.52906 * 121.14082 * 150.61758 * 10 9 8 12 12 C 1.53954 * 86.88484 * 150.57014 * 11 10 9 13 13 N 1.46495 * 113.58384 * 220.70894 * 12 11 10 14 14 C 1.36932 * 119.99974 * 205.00190 * 13 12 11 15 15 H 1.07996 * 120.00485 * 359.97438 * 14 13 12 16 16 C 1.38813 * 119.99871 * 179.97438 * 14 13 12 17 17 N 1.31623 * 120.00287 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 120.00039 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47219 * 89.99713 * 18 16 14 20 20 H 1.48500 * 109.47302 * 209.99866 * 18 16 14 21 21 H 1.48503 * 109.47012 * 329.99603 * 18 16 14 22 22 C 1.52914 * 121.13550 * 259.18373 * 10 9 8 23 23 C 1.52907 * 88.04047 * 24.89729 * 10 9 8 24 24 H 1.08996 * 109.47533 * 300.00571 * 1 2 3 25 25 H 1.09000 * 109.47099 * 60.00821 * 1 2 3 26 26 H 1.09004 * 109.47440 * 180.02562 * 1 2 3 27 27 H 1.07999 * 119.99565 * 179.97438 * 2 1 3 28 28 H 1.08994 * 109.47244 * 270.00983 * 4 3 2 29 29 H 1.09005 * 109.46665 * 30.00523 * 4 3 2 30 30 H 1.08998 * 109.47138 * 150.00210 * 4 3 2 31 31 H 0.97001 * 119.99900 * 0.02562 * 7 5 3 32 32 H 1.08994 * 112.88061 * 336.14460 * 8 7 5 33 33 H 1.08994 * 113.66498 * 106.19265 * 9 8 7 34 34 H 1.09005 * 113.74881 * 335.15204 * 9 8 7 35 35 H 1.09002 * 113.66405 * 265.09178 * 11 10 9 36 36 H 1.08998 * 113.66160 * 36.05328 * 11 10 9 37 37 H 1.08999 * 113.57483 * 89.91371 * 12 11 10 38 38 H 0.97000 * 119.99646 * 25.00298 * 13 12 11 39 39 H 0.97002 * 119.99999 * 179.97438 * 17 16 14 40 40 H 1.08998 * 113.65700 * 323.84770 * 22 10 9 41 41 H 1.08999 * 113.66069 * 94.81063 * 22 10 9 42 42 H 1.09005 * 113.66022 * 89.57540 * 23 10 9 43 43 H 1.09001 * 113.66746 * 220.62682 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1517 0.0000 4 6 1.4185 2.4568 -0.0006 5 6 3.6430 1.1517 0.0006 6 8 4.2510 0.0984 0.0015 7 7 4.3169 2.3188 0.0000 8 6 5.7819 2.3188 0.0012 9 6 6.3973 3.5980 0.5968 10 6 7.4252 3.5264 -0.5330 11 6 8.0732 4.7927 -1.0939 12 6 9.3016 3.9215 -1.4135 13 7 10.5782 4.5821 -1.1308 14 6 11.7103 4.1988 -1.7990 15 1 11.6621 3.4092 -2.5343 16 6 12.9198 4.8251 -1.5315 17 7 14.0081 4.4564 -2.1735 18 14 13.0033 6.1904 -0.2593 19 1 13.2945 5.6067 1.0748 20 1 14.0796 7.1450 -0.6275 21 1 11.7023 6.9049 -0.2138 22 6 8.8316 2.9779 -0.2889 23 6 6.3988 2.7368 -1.3460 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 2.0469 -0.9353 0.0004 28 1 1.2371 2.7712 -1.0283 29 1 0.4659 2.3266 0.5130 30 1 2.0075 3.2165 0.5133 31 1 3.8319 3.1589 -0.0003 32 1 6.2053 1.4007 0.4085 33 1 6.8267 3.4562 1.5885 34 1 5.7433 4.4681 0.5386 35 1 7.5727 5.1849 -1.9793 36 1 8.2632 5.5573 -0.3408 37 1 9.2691 3.4687 -2.4045 38 1 10.6216 5.2910 -0.4701 39 1 14.8533 4.8943 -1.9867 40 1 9.2361 3.2319 0.6909 41 1 8.9364 1.9200 -0.5295 42 1 5.7440 3.3639 -1.9512 43 1 6.8293 1.9068 -1.9064 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120906995.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:40 Heat of formation + Delta-G solvation = 25.983591 kcal Electronic energy + Delta-G solvation = -21097.020314 eV Core-core repulsion = 17950.935889 eV Total energy + Delta-G solvation = -3146.084425 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.66746 -39.42809 -36.18518 -35.66674 -33.73555 -32.23129 -30.27116 -29.44863 -26.58242 -25.82034 -25.29558 -24.33434 -22.88382 -21.16472 -20.26078 -18.86567 -17.90164 -17.29026 -17.24787 -16.48200 -15.45169 -15.10345 -14.93493 -14.75004 -14.08824 -13.94948 -13.85010 -13.55265 -13.03629 -12.82245 -12.68458 -12.63226 -12.61139 -12.43112 -12.00498 -11.75433 -11.64691 -11.61923 -11.33095 -10.97749 -10.79835 -10.21163 -10.17080 -9.94915 -9.79366 -9.69121 -9.46378 -9.42150 -9.04554 -8.86844 -7.24500 -5.76418 -3.11638 1.08910 3.05403 3.09136 3.37583 3.40385 3.45431 4.40514 4.53318 4.53465 4.59190 4.60612 4.73658 4.78908 4.84960 4.86882 5.06983 5.22344 5.25942 5.27635 5.40623 5.44320 5.50974 5.57832 5.62805 5.66814 5.80773 5.82018 5.87678 6.02589 6.08886 6.11641 6.16458 6.19627 6.24896 6.30845 6.50774 6.58946 6.81832 7.02069 7.39044 8.00960 8.09131 8.43582 9.21586 9.94234 10.14445 11.41925 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.052329 B = 0.002743 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.952208 B =10204.643616 C =10428.408819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.076 4.076 3 C -0.193 4.193 4 C -0.118 4.118 5 C 0.551 3.449 6 O -0.545 6.545 7 N -0.715 5.715 8 C 0.123 3.877 9 C -0.131 4.131 10 C -0.102 4.102 11 C -0.138 4.138 12 C 0.174 3.826 13 N -0.738 5.738 14 C -0.246 4.246 15 H 0.091 0.909 16 C 0.003 3.997 17 N -0.934 5.934 18 Si 0.885 3.115 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.277 1.277 22 C -0.142 4.142 23 C -0.124 4.124 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.126 0.874 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.399 0.601 32 H 0.114 0.886 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.362 0.638 39 H 0.259 0.741 40 H 0.079 0.921 41 H 0.061 0.939 42 H 0.083 0.917 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.122 -2.960 5.793 29.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.095 4.095 3 C -0.196 4.196 4 C -0.175 4.175 5 C 0.340 3.660 6 O -0.424 6.424 7 N -0.365 5.365 8 C 0.018 3.982 9 C -0.169 4.169 10 C -0.103 4.103 11 C -0.178 4.178 12 C 0.063 3.937 13 N -0.377 5.377 14 C -0.376 4.376 15 H 0.109 0.891 16 C -0.193 4.193 17 N -0.581 5.581 18 Si 0.715 3.285 19 H -0.211 1.211 20 H -0.217 1.217 21 H -0.203 1.203 22 C -0.183 4.183 23 C -0.163 4.163 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.086 0.914 27 H 0.144 0.856 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.235 0.765 32 H 0.132 0.868 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.195 0.805 39 H 0.069 0.931 40 H 0.098 0.902 41 H 0.080 0.920 42 H 0.101 0.899 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -28.458 -3.798 5.624 29.256 hybrid contribution 0.015 1.425 0.937 1.705 sum -28.443 -2.373 6.561 29.286 Atomic orbital electron populations 1.20993 0.92139 1.03092 1.02541 1.23584 0.96238 0.98036 0.91684 1.21465 0.92847 0.96792 1.08514 1.20824 1.00078 0.94020 1.02535 1.18447 0.87702 0.83925 0.75951 1.90794 1.70119 1.31285 1.50181 1.46002 1.07376 1.08364 1.74774 1.22609 0.78171 0.99726 0.97646 1.23178 0.97951 0.96663 0.99121 1.22085 0.93440 0.98512 0.96259 1.23285 0.98321 0.95979 1.00170 1.21551 0.83978 0.91967 0.96182 1.42767 1.04831 1.42498 1.47627 1.19154 0.85227 1.16200 1.17009 0.89135 1.24705 0.95538 0.99503 0.99527 1.69708 0.99062 1.44650 1.44708 0.86541 0.77017 0.82782 0.82145 1.21083 1.21744 1.20335 1.23601 0.92224 1.00446 1.02001 1.23146 0.97003 0.99791 0.96347 0.90676 0.90744 0.91383 0.85588 0.90889 0.90917 0.91788 0.76545 0.86763 0.90830 0.89945 0.91932 0.90465 0.89938 0.80517 0.93070 0.90235 0.92019 0.89861 0.90746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.63 8.91 36.01 0.32 -0.30 16 2 C -0.08 -0.61 9.84 -36.13 -0.36 -0.96 16 3 C -0.19 -1.68 6.00 -102.85 -0.62 -2.29 16 4 C -0.12 -0.63 9.14 36.01 0.33 -0.30 16 5 C 0.55 6.61 7.75 -12.66 -0.10 6.51 16 6 O -0.55 -8.78 15.82 5.26 0.08 -8.70 16 7 N -0.71 -7.21 5.30 -54.03 -0.29 -7.49 16 8 C 0.12 1.45 4.24 -66.95 -0.28 1.16 16 9 C -0.13 -1.45 7.59 -26.28 -0.20 -1.65 16 10 C -0.10 -1.37 1.11 -154.71 -0.17 -1.54 16 11 C -0.14 -2.11 7.59 -26.28 -0.20 -2.31 16 12 C 0.17 3.34 4.49 -66.84 -0.30 3.04 16 13 N -0.74 -17.52 5.21 -52.37 -0.27 -17.80 16 14 C -0.25 -6.99 10.45 -15.06 -0.16 -7.15 16 15 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 16 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 17 N -0.93 -29.55 13.97 55.49 0.78 -28.77 16 18 Si 0.88 22.20 27.74 -169.99 -4.71 17.49 16 19 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 21 H -0.28 -6.52 6.52 56.52 0.37 -6.15 16 22 C -0.14 -2.36 7.65 -26.18 -0.20 -2.56 16 23 C -0.12 -1.53 7.64 -26.28 -0.20 -1.73 16 24 H 0.07 0.29 7.40 -51.93 -0.38 -0.09 16 25 H 0.07 0.30 8.10 -51.93 -0.42 -0.12 16 26 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.13 1.18 7.49 -52.49 -0.39 0.79 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.30 6.49 -51.93 -0.34 -0.04 16 30 H 0.06 0.30 6.70 -51.93 -0.35 -0.05 16 31 H 0.40 2.91 6.83 -40.82 -0.28 2.64 16 32 H 0.11 1.59 7.47 -51.93 -0.39 1.20 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.08 0.77 8.12 -51.93 -0.42 0.35 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.08 1.18 8.12 -51.93 -0.42 0.76 16 37 H 0.08 1.63 8.10 -51.93 -0.42 1.21 16 38 H 0.36 8.41 5.78 -40.82 -0.24 8.18 16 39 H 0.26 7.80 8.31 -40.82 -0.34 7.47 16 40 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 348.76 15.07 5.26 5.26 Total: -1.00 -33.66 348.76 -8.41 -42.07 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -7.02 Total: 8.05 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -2.23 Total: -10.11 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: 0.22 Total: -54.06 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: 0.08 Total: -8.70 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.71 Total: 17.49 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.66 -8.41 -42.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120906995.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.056 kcal (2) G-P(sol) polarization free energy of solvation -33.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds