Wall clock time and date at job start Tue Mar 31 2020 01:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47310 * 2 1 4 4 N 1.46907 * 109.47264 * 174.87691 * 3 2 1 5 5 C 1.46894 * 110.99867 * 199.72106 * 4 3 2 6 6 C 1.50700 * 109.47345 * 66.04359 * 5 4 3 7 7 H 1.07997 * 120.00180 * 0.02562 * 6 5 4 8 8 C 1.37882 * 120.00215 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00079 * 180.02562 * 8 6 5 10 10 Si 1.86796 * 119.99723 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.47232 * 90.00345 * 10 8 6 12 12 H 1.48502 * 109.47405 * 210.00084 * 10 8 6 13 13 H 1.48504 * 109.47563 * 330.00558 * 10 8 6 14 14 C 1.46895 * 110.99889 * 75.76397 * 4 3 2 15 15 C 1.50707 * 109.46886 * 199.75315 * 14 4 3 16 16 C 1.38089 * 120.35604 * 84.44628 * 15 14 4 17 17 N 1.31937 * 120.83111 * 179.97438 * 16 15 14 18 18 C 1.32273 * 121.64938 * 0.02570 * 17 16 15 19 19 O 1.35679 * 119.68328 * 180.02562 * 18 17 16 20 20 C 1.42896 * 116.99986 * 359.97438 * 19 18 17 21 21 C 1.38881 * 120.63017 * 359.97438 * 18 17 16 22 22 C 1.50702 * 120.43757 * 180.02562 * 21 18 17 23 23 C 1.38414 * 119.11225 * 359.70191 * 21 18 17 24 24 H 1.09002 * 109.46834 * 60.00377 * 1 2 3 25 25 H 1.09000 * 109.47374 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47535 * 300.00014 * 1 2 3 27 27 H 1.09003 * 109.47271 * 239.99582 * 2 1 3 28 28 H 1.08999 * 109.47013 * 120.00369 * 2 1 3 29 29 H 1.08996 * 109.47369 * 54.87505 * 3 2 1 30 30 H 1.09001 * 109.47273 * 294.87623 * 3 2 1 31 31 H 1.09008 * 109.47177 * 186.04397 * 5 4 3 32 32 H 1.08996 * 109.47209 * 306.04049 * 5 4 3 33 33 H 0.96997 * 120.00033 * 179.97438 * 9 8 6 34 34 H 1.08998 * 109.47134 * 79.75346 * 14 4 3 35 35 H 1.08998 * 109.47229 * 319.75185 * 14 4 3 36 36 H 1.08003 * 119.58438 * 0.02562 * 16 15 14 37 37 H 1.09005 * 109.46995 * 60.00236 * 20 19 18 38 38 H 1.09002 * 109.47197 * 180.02562 * 20 19 18 39 39 H 1.09001 * 109.47287 * 300.00367 * 20 19 18 40 40 H 1.09003 * 109.46934 * 90.00243 * 22 21 18 41 41 H 1.09005 * 109.46915 * 209.99867 * 22 21 18 42 42 H 1.08994 * 109.47491 * 330.00336 * 22 21 18 43 43 H 1.08005 * 120.75249 * 180.29836 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5039 1.4443 0.1237 5 6 3.9910 2.7491 0.5905 6 6 3.5119 2.9897 1.9989 7 1 2.9064 2.2474 2.4975 8 6 3.8466 4.1576 2.6509 9 7 3.4288 4.3673 3.8802 10 14 4.8945 5.4413 1.7887 11 1 4.0147 6.3915 1.0617 12 1 5.6980 6.1813 2.7946 13 1 5.8037 4.7717 0.8242 14 6 4.1399 1.0683 -1.1459 15 6 5.5519 0.6111 -0.8843 16 6 5.8053 -0.6948 -0.5139 17 7 7.0378 -1.1052 -0.2831 18 6 8.0733 -0.2898 -0.3954 19 8 9.3241 -0.7544 -0.1491 20 6 9.4438 -2.1282 0.2254 21 6 7.8925 1.0369 -0.7641 22 6 9.0755 1.9619 -0.8913 23 6 6.6121 1.4963 -1.0197 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6037 1.9821 0.8405 30 1 1.7536 1.9291 -0.9323 31 1 5.0809 2.7582 0.5709 32 1 3.6094 3.5341 -0.0623 33 1 3.6646 5.1888 4.3390 34 1 4.1546 1.9294 -1.8140 35 1 3.5758 0.2587 -1.6091 36 1 4.9844 -1.3892 -0.4127 37 1 9.0493 -2.7579 -0.5721 38 1 10.4936 -2.3688 0.3933 39 1 8.8798 -2.3056 1.1411 40 1 9.4587 1.9235 -1.9110 41 1 8.7667 2.9808 -0.6573 42 1 9.8564 1.6506 -0.1976 43 1 6.4416 2.5217 -1.3129 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137004491.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:12 Heat of formation + Delta-G solvation = -30.793892 kcal Electronic energy + Delta-G solvation = -22054.823979 eV Core-core repulsion = 18906.277498 eV Total energy + Delta-G solvation = -3148.546481 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.71653 -39.40583 -38.27136 -34.89730 -34.64496 -34.26294 -32.56901 -29.86328 -28.58163 -28.04647 -27.06714 -25.50912 -23.80319 -22.94976 -22.22854 -21.11606 -19.32201 -18.98203 -18.18361 -17.03313 -16.75874 -16.44174 -16.16968 -15.41346 -15.35191 -15.20800 -15.06843 -14.64580 -14.50259 -14.32781 -13.99941 -13.76435 -13.56426 -13.39294 -13.30232 -12.93741 -12.75471 -12.67745 -12.60286 -12.34144 -12.10143 -12.04268 -11.81614 -11.63323 -11.39574 -11.27163 -10.78230 -10.59763 -10.55211 -9.23068 -8.97150 -8.27507 -6.29465 0.18922 0.29606 1.31846 1.34382 1.44293 2.16871 2.33828 2.70796 3.06321 3.37003 3.40968 3.81264 3.91613 4.07655 4.16607 4.18723 4.32032 4.36600 4.44594 4.49315 4.55056 4.57892 4.65446 4.73868 4.77363 4.78364 4.80311 4.86042 4.98604 5.07730 5.10776 5.17731 5.20169 5.27692 5.35605 5.47062 5.52684 5.54563 5.57729 6.02796 6.26296 6.43400 6.68037 6.77326 6.87245 7.33553 8.89262 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.012086 B = 0.006329 C = 0.004680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.089726 B = 4423.183168 C = 5981.714027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 C 0.062 3.938 4 N -0.538 5.538 5 C 0.173 3.827 6 C -0.510 4.510 7 H 0.036 0.964 8 C 0.007 3.993 9 N -0.949 5.949 10 Si 0.940 3.060 11 H -0.266 1.266 12 H -0.285 1.285 13 H -0.245 1.245 14 C 0.101 3.899 15 C -0.153 4.153 16 C 0.144 3.856 17 N -0.550 5.550 18 C 0.295 3.705 19 O -0.317 6.317 20 C 0.038 3.962 21 C -0.165 4.165 22 C -0.096 4.096 23 C -0.048 4.048 24 H 0.061 0.939 25 H 0.070 0.930 26 H 0.039 0.961 27 H 0.076 0.924 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.035 0.965 31 H 0.029 0.971 32 H -0.014 1.014 33 H 0.265 0.735 34 H 0.044 0.956 35 H 0.104 0.896 36 H 0.173 0.827 37 H 0.058 0.942 38 H 0.124 0.876 39 H 0.048 0.952 40 H 0.086 0.914 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.114 -9.554 -14.472 18.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.147 4.147 3 C -0.066 4.066 4 N -0.262 5.262 5 C 0.046 3.954 6 C -0.548 4.548 7 H 0.055 0.945 8 C -0.190 4.190 9 N -0.591 5.591 10 Si 0.763 3.237 11 H -0.191 1.191 12 H -0.211 1.211 13 H -0.168 1.168 14 C -0.027 4.027 15 C -0.155 4.155 16 C -0.012 4.012 17 N -0.273 5.273 18 C 0.116 3.884 19 O -0.224 6.224 20 C -0.057 4.057 21 C -0.168 4.168 22 C -0.153 4.153 23 C -0.074 4.074 24 H 0.080 0.920 25 H 0.089 0.911 26 H 0.058 0.942 27 H 0.095 0.905 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.003 0.997 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.122 0.878 36 H 0.190 0.810 37 H 0.077 0.923 38 H 0.142 0.858 39 H 0.066 0.934 40 H 0.104 0.896 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 7.662 -10.535 -13.747 18.939 hybrid contribution -0.288 1.994 -0.173 2.022 sum 7.373 -8.542 -13.920 17.919 Atomic orbital electron populations 1.21700 0.94848 1.02235 1.01542 1.21458 0.95964 0.95220 1.02086 1.22074 0.87108 0.97840 0.99583 1.61849 1.06022 1.30700 1.27591 1.19932 0.95573 0.86306 0.93580 1.21274 1.31869 1.02906 0.98798 0.94535 1.25823 0.97293 1.00482 0.95411 1.70053 1.48106 1.27301 1.13594 0.85823 0.79685 0.79200 0.78986 1.19111 1.21051 1.16839 1.20977 0.90611 1.00563 0.90565 1.20742 0.96415 0.95040 1.03341 1.22439 0.92196 0.94428 0.92121 1.67302 1.00469 1.38474 1.21024 1.19826 0.84952 0.89977 0.93667 1.86181 1.22637 1.30707 1.82888 1.23021 1.04079 0.78396 1.00188 1.20159 0.97352 0.93194 1.06096 1.20587 0.94173 0.97209 1.03336 1.21476 0.90927 0.99980 0.95037 0.91998 0.91145 0.94164 0.90519 0.93062 0.93129 0.94658 0.95301 0.99680 0.92613 0.93737 0.87768 0.80971 0.92320 0.85777 0.93354 0.89555 0.91127 0.91074 0.83948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 9.91 71.98 0.71 -2.82 16 2 C -0.11 -3.11 5.98 30.59 0.18 -2.93 16 3 C 0.06 2.21 4.79 86.30 0.41 2.63 16 4 N -0.54 -21.04 4.34 -905.38 -3.93 -24.97 16 5 C 0.17 8.12 3.61 85.56 0.31 8.43 16 6 C -0.51 -29.49 8.79 25.60 0.22 -29.26 16 7 H 0.04 2.37 7.56 -2.91 -0.02 2.35 16 8 C 0.01 0.40 5.47 84.66 0.46 0.86 16 9 N -0.95 -59.98 13.96 21.45 0.30 -59.68 16 10 Si 0.94 43.97 27.47 68.60 1.88 45.85 16 11 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 12 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 13 H -0.24 -10.49 6.54 99.48 0.65 -9.84 16 14 C 0.10 3.04 4.97 85.56 0.43 3.46 16 15 C -0.15 -4.77 5.03 -19.77 -0.10 -4.87 16 16 C 0.14 4.41 10.87 84.64 0.92 5.33 16 17 N -0.55 -17.68 9.22 -308.93 -2.85 -20.53 16 18 C 0.29 9.31 7.47 84.78 0.63 9.94 16 19 O -0.32 -8.85 9.54 -89.96 -0.86 -9.71 16 20 C 0.04 0.80 10.38 113.37 1.18 1.97 16 21 C -0.17 -4.99 5.91 -19.67 -0.12 -5.11 16 22 C -0.10 -2.30 9.81 71.24 0.70 -1.61 16 23 C -0.05 -1.50 8.27 22.44 0.19 -1.31 16 24 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.08 1.79 6.89 -2.39 -0.02 1.77 16 28 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.05 2.23 6.58 -2.39 -0.02 2.21 16 30 H 0.04 1.14 8.00 -2.39 -0.02 1.12 16 31 H 0.03 1.37 5.45 -2.38 -0.01 1.36 16 32 H -0.01 -0.66 7.55 -2.39 -0.02 -0.68 16 33 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 34 H 0.04 1.28 7.91 -2.39 -0.02 1.26 16 35 H 0.10 2.54 6.54 -2.39 -0.02 2.52 16 36 H 0.17 4.51 8.06 -2.91 -0.02 4.49 16 37 H 0.06 1.19 8.10 -2.38 -0.02 1.17 16 38 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 40 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.07 1.63 8.10 -2.38 -0.02 1.61 16 42 H 0.07 1.70 7.55 -2.39 -0.02 1.68 16 43 H 0.14 4.08 8.02 -2.91 -0.02 4.06 16 Total: -1.00 -69.74 348.12 1.59 -68.15 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 0.92 Total: 16.18 kcal Atomic # 6 Polarization: -21.42 SS G_CDS: 6.13 Total: -15.29 kcal Atomic # 7 Polarization: -98.70 SS G_CDS: -6.48 Total: -105.18 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: -0.86 Total: -9.71 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.88 Total: 45.85 kcal Total: -69.74 1.59 -68.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137004491.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.353 kcal (2) G-P(sol) polarization free energy of solvation -69.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds