Wall clock time and date at job start Tue Mar 31 2020 00:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46921 * 2 1 4 4 C 1.52995 * 109.47214 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.47054 * 179.97438 * 4 3 2 6 6 C 1.36934 * 119.99781 * 272.53393 * 5 4 3 7 7 H 1.07999 * 119.99633 * 176.97161 * 6 5 4 8 8 C 1.38812 * 120.00271 * 356.96713 * 6 5 4 9 9 N 1.31612 * 119.99940 * 29.63423 * 8 6 5 10 10 Si 1.86803 * 119.99903 * 209.63653 * 8 6 5 11 11 H 1.48503 * 109.47077 * 84.99259 * 10 8 6 12 12 H 1.48504 * 109.46757 * 204.99033 * 10 8 6 13 13 H 1.48493 * 109.47004 * 324.98913 * 10 8 6 14 14 C 1.46497 * 119.99783 * 92.53214 * 5 4 3 15 15 C 1.50693 * 109.47123 * 269.99855 * 14 5 4 16 16 C 1.38094 * 120.35613 * 90.00605 * 15 14 5 17 17 N 1.31938 * 120.83381 * 179.70571 * 16 15 14 18 18 C 1.32280 * 121.64713 * 0.02562 * 17 16 15 19 19 O 1.35677 * 119.68069 * 180.02562 * 18 17 16 20 20 C 1.42903 * 117.00072 * 0.02562 * 19 18 17 21 21 C 1.38871 * 120.63240 * 0.02562 * 18 17 16 22 22 C 1.50701 * 120.44373 * 180.02562 * 21 18 17 23 23 C 1.38420 * 119.11615 * 359.97438 * 21 18 17 24 24 H 1.09000 * 109.47188 * 60.00319 * 1 2 3 25 25 H 1.09000 * 109.46687 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47407 * 299.99745 * 1 2 3 27 27 H 1.08999 * 109.47625 * 239.99910 * 2 1 3 28 28 H 1.09000 * 109.47188 * 119.99681 * 2 1 3 29 29 H 1.08999 * 109.47044 * 59.99554 * 3 2 1 30 30 H 1.09000 * 109.46929 * 299.99840 * 3 2 1 31 31 H 1.08999 * 109.47442 * 59.99843 * 4 3 2 32 32 H 1.09000 * 109.47080 * 299.99793 * 4 3 2 33 33 H 0.97000 * 120.00292 * 180.02562 * 9 8 6 34 34 H 1.09001 * 109.47027 * 149.99866 * 14 5 4 35 35 H 1.09001 * 109.47520 * 30.00294 * 14 5 4 36 36 H 1.07995 * 119.58163 * 359.72121 * 16 15 14 37 37 H 1.08994 * 109.47478 * 59.99590 * 20 19 18 38 38 H 1.08996 * 109.46701 * 180.02562 * 20 19 18 39 39 H 1.09005 * 109.46949 * 299.99504 * 20 19 18 40 40 H 1.08995 * 109.47159 * 89.99962 * 22 21 18 41 41 H 1.09000 * 109.47156 * 210.00184 * 22 21 18 42 42 H 1.08999 * 109.46954 * 330.00142 * 22 21 18 43 43 H 1.08000 * 120.76241 * 180.02562 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4427 0.0006 5 7 4.0582 2.8240 0.0000 6 6 4.2374 3.4862 -1.1850 7 1 4.5504 4.5199 -1.1840 8 6 4.0170 2.8290 -2.3877 9 7 3.1325 1.8566 -2.4537 10 14 4.9757 3.3248 -3.9124 11 1 6.2810 2.6168 -3.9283 12 1 4.1999 2.9602 -5.1251 13 1 5.2081 4.7913 -3.8958 14 6 4.3546 3.4966 1.2672 15 6 3.1180 4.2003 1.7636 16 6 2.2260 3.5449 2.5893 17 7 1.1433 4.1538 3.0341 18 6 0.8691 5.4067 2.7101 19 8 -0.2555 5.9941 3.1907 20 6 -1.0907 5.2013 4.0369 21 6 1.7213 6.1264 1.8829 22 6 1.4050 7.5537 1.5170 23 6 2.8656 5.5157 1.3997 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6766 1.9564 -0.8900 31 1 3.9337 0.9287 -0.8891 32 1 3.9329 0.9290 0.8909 33 1 2.9787 1.3971 -3.2940 34 1 5.1507 4.2253 1.1143 35 1 4.6737 2.7594 2.0040 36 1 2.4171 2.5210 2.8747 37 1 -0.5257 4.8882 4.9149 38 1 -1.9532 5.7895 4.3501 39 1 -1.4305 4.3214 3.4907 40 1 1.8513 8.2244 2.2512 41 1 1.8107 7.7742 0.5297 42 1 0.3243 7.6949 1.5056 43 1 3.5471 6.0507 0.7549 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137008426.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:17 Heat of formation + Delta-G solvation = 11.009949 kcal Electronic energy + Delta-G solvation = -22604.488519 eV Core-core repulsion = 19457.754788 eV Total energy + Delta-G solvation = -3146.733731 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.25467 -37.76576 -36.17791 -33.58730 -33.23769 -32.17305 -30.21577 -28.01076 -27.37017 -26.80233 -25.35575 -23.53264 -22.43927 -21.38697 -20.14134 -19.82303 -17.96370 -16.97310 -16.43093 -15.73839 -15.13239 -14.39898 -14.12166 -14.05435 -13.86455 -13.62812 -13.36016 -13.20011 -13.00159 -12.53946 -12.32924 -12.18592 -11.96644 -11.70362 -11.53014 -11.49824 -11.09882 -11.05998 -10.88139 -10.69895 -10.44806 -10.10768 -10.01224 -9.88575 -9.63500 -9.20675 -9.14300 -9.06090 -8.24901 -7.72768 -6.96255 -5.81378 -3.03806 1.64893 1.85300 3.39036 3.43426 3.47369 3.48600 4.22968 4.52961 4.77961 5.22478 5.30418 5.31498 5.42342 5.45540 5.53578 5.59238 5.67182 5.79038 5.85219 5.85982 5.87777 5.95704 5.98576 6.06960 6.23450 6.42574 6.47909 6.54571 6.58319 6.62234 6.73893 6.80854 6.96744 6.97043 6.99627 7.25540 7.32500 7.63040 7.68983 7.83648 8.16559 8.31245 8.34009 9.21210 9.83739 10.27864 11.21149 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015044 B = 0.006308 C = 0.005110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.778731 B = 4438.016751 C = 5478.332163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.113 4.113 3 C -0.120 4.120 4 C 0.167 3.833 5 N -0.588 5.588 6 C -0.252 4.252 7 H 0.075 0.925 8 C 0.004 3.996 9 N -0.883 5.883 10 Si 0.888 3.112 11 H -0.289 1.289 12 H -0.295 1.295 13 H -0.283 1.283 14 C 0.190 3.810 15 C -0.159 4.159 16 C 0.135 3.865 17 N -0.540 5.540 18 C 0.293 3.707 19 O -0.314 6.314 20 C 0.044 3.956 21 C -0.158 4.158 22 C -0.096 4.096 23 C -0.034 4.034 24 H 0.050 0.950 25 H 0.038 0.962 26 H 0.042 0.958 27 H 0.058 0.942 28 H 0.036 0.964 29 H 0.022 0.978 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.004 0.996 33 H 0.252 0.748 34 H 0.058 0.942 35 H 0.051 0.949 36 H 0.149 0.851 37 H 0.053 0.947 38 H 0.088 0.912 39 H 0.055 0.945 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.656 3.860 9.748 11.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.152 4.152 3 C -0.160 4.160 4 C 0.042 3.958 5 N -0.307 5.307 6 C -0.381 4.381 7 H 0.093 0.907 8 C -0.193 4.193 9 N -0.528 5.528 10 Si 0.718 3.282 11 H -0.216 1.216 12 H -0.221 1.221 13 H -0.208 1.208 14 C 0.062 3.938 15 C -0.164 4.164 16 C -0.021 4.021 17 N -0.262 5.262 18 C 0.114 3.886 19 O -0.222 6.222 20 C -0.052 4.052 21 C -0.160 4.160 22 C -0.153 4.153 23 C -0.060 4.060 24 H 0.069 0.931 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.055 0.945 29 H 0.041 0.959 30 H 0.114 0.886 31 H 0.108 0.892 32 H 0.023 0.977 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.166 0.834 37 H 0.072 0.928 38 H 0.106 0.894 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.364 3.551 10.083 11.546 hybrid contribution 0.584 0.354 -1.328 1.493 sum -3.780 3.905 8.755 10.305 Atomic orbital electron populations 1.21723 0.97661 0.99681 1.01074 1.21398 0.94158 0.99548 1.00069 1.22230 0.98555 0.93743 1.01433 1.21120 0.92150 0.84155 0.98344 1.44494 1.75370 1.10621 1.00265 1.19210 1.39368 0.96235 0.83243 0.90669 1.24694 0.98679 0.98720 0.97247 1.70252 1.30402 1.26935 1.25163 0.86502 0.80795 0.77923 0.82990 1.21602 1.22131 1.20839 1.19746 0.91083 0.94709 0.88247 1.22059 1.02611 0.94533 0.97243 1.22074 0.88171 0.98530 0.93321 1.67189 1.21986 1.09273 1.27747 1.19454 0.87248 0.88752 0.93108 1.86163 1.32051 1.40432 1.63517 1.22715 0.92954 0.95930 0.93555 1.19824 0.96215 0.98187 1.01799 1.20507 1.02153 0.91508 1.01134 1.21167 0.94779 0.94224 0.95845 0.93090 0.94325 0.93880 0.92309 0.94484 0.95927 0.88607 0.89218 0.97721 0.93777 0.92411 0.93081 0.83406 0.92791 0.89370 0.92665 0.91850 0.91650 0.91483 0.84819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.91 37.16 0.37 -2.13 16 2 C -0.11 -2.18 5.93 -26.73 -0.16 -2.34 16 3 C -0.12 -2.66 4.99 -26.73 -0.13 -2.79 16 4 C 0.17 3.81 4.99 -4.04 -0.02 3.79 16 5 N -0.59 -13.58 2.52 -174.62 -0.44 -14.02 16 6 C -0.25 -6.43 9.68 -15.06 -0.15 -6.57 16 7 H 0.08 1.89 7.98 -52.49 -0.42 1.47 16 8 C 0.00 0.12 4.97 -17.43 -0.09 0.03 16 9 N -0.88 -23.57 8.36 55.49 0.46 -23.11 16 10 Si 0.89 20.89 29.64 -169.99 -5.04 15.85 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 14 C 0.19 3.64 5.86 -5.20 -0.03 3.61 16 15 C -0.16 -2.95 5.43 -104.47 -0.57 -3.52 16 16 C 0.14 2.46 8.84 -17.56 -0.16 2.31 16 17 N -0.54 -9.95 9.22 -13.33 -0.12 -10.07 16 18 C 0.29 5.26 7.47 -17.12 -0.13 5.13 16 19 O -0.31 -5.04 9.54 -18.73 -0.18 -5.22 16 20 C 0.04 0.56 10.38 101.05 1.05 1.61 16 21 C -0.16 -2.71 5.91 -104.32 -0.62 -3.33 16 22 C -0.10 -1.33 9.81 36.01 0.35 -0.98 16 23 C -0.03 -0.61 9.53 -39.31 -0.37 -0.98 16 24 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.02 0.49 5.65 -51.93 -0.29 0.20 16 30 H 0.10 2.51 6.31 -51.93 -0.33 2.19 16 31 H 0.09 2.30 5.81 -51.93 -0.30 1.99 16 32 H 0.00 0.09 7.86 -51.93 -0.41 -0.31 16 33 H 0.25 6.66 8.31 -40.82 -0.34 6.32 16 34 H 0.06 1.06 7.99 -51.93 -0.41 0.64 16 35 H 0.05 0.88 7.83 -51.93 -0.41 0.48 16 36 H 0.15 2.52 7.86 -52.49 -0.41 2.11 16 37 H 0.05 0.67 8.10 -51.93 -0.42 0.25 16 38 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.05 0.73 8.10 -51.93 -0.42 0.31 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.86 8.10 -51.93 -0.42 0.44 16 42 H 0.07 0.92 7.55 -51.93 -0.39 0.53 16 43 H 0.13 2.25 8.06 -52.49 -0.42 1.83 16 LS Contribution 346.81 15.07 5.23 5.23 Total: -1.00 -27.83 346.81 -7.89 -35.72 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -7.15 Total: 1.79 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -0.65 Total: -6.17 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: -0.10 Total: -47.20 kcal Atomic # 8 Polarization: -5.04 SS G_CDS: -0.18 Total: -5.22 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.04 Total: 15.85 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -27.83 -7.89 -35.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137008426.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.727 kcal (2) G-P(sol) polarization free energy of solvation -27.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds