Wall clock time and date at job start Tue Mar 31 2020 00:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46921 * 2 1 4 4 C 1.52995 * 109.47214 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.47054 * 179.97438 * 4 3 2 6 6 C 1.36934 * 119.99781 * 272.53393 * 5 4 3 7 7 H 1.07999 * 119.99633 * 176.97161 * 6 5 4 8 8 C 1.38812 * 120.00271 * 356.96713 * 6 5 4 9 9 N 1.31612 * 119.99940 * 29.63423 * 8 6 5 10 10 Si 1.86803 * 119.99903 * 209.63653 * 8 6 5 11 11 H 1.48503 * 109.47077 * 84.99259 * 10 8 6 12 12 H 1.48504 * 109.46757 * 204.99033 * 10 8 6 13 13 H 1.48493 * 109.47004 * 324.98913 * 10 8 6 14 14 C 1.46497 * 119.99783 * 92.53214 * 5 4 3 15 15 C 1.50693 * 109.47123 * 269.99855 * 14 5 4 16 16 C 1.38094 * 120.35613 * 90.00605 * 15 14 5 17 17 N 1.31938 * 120.83381 * 179.70571 * 16 15 14 18 18 C 1.32280 * 121.64713 * 0.02562 * 17 16 15 19 19 O 1.35677 * 119.68069 * 180.02562 * 18 17 16 20 20 C 1.42903 * 117.00072 * 0.02562 * 19 18 17 21 21 C 1.38871 * 120.63240 * 0.02562 * 18 17 16 22 22 C 1.50701 * 120.44373 * 180.02562 * 21 18 17 23 23 C 1.38420 * 119.11615 * 359.97438 * 21 18 17 24 24 H 1.09000 * 109.47188 * 60.00319 * 1 2 3 25 25 H 1.09000 * 109.46687 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47407 * 299.99745 * 1 2 3 27 27 H 1.08999 * 109.47625 * 239.99910 * 2 1 3 28 28 H 1.09000 * 109.47188 * 119.99681 * 2 1 3 29 29 H 1.08999 * 109.47044 * 59.99554 * 3 2 1 30 30 H 1.09000 * 109.46929 * 299.99840 * 3 2 1 31 31 H 1.08999 * 109.47442 * 59.99843 * 4 3 2 32 32 H 1.09000 * 109.47080 * 299.99793 * 4 3 2 33 33 H 0.97000 * 120.00292 * 180.02562 * 9 8 6 34 34 H 1.09001 * 109.47027 * 149.99866 * 14 5 4 35 35 H 1.09001 * 109.47520 * 30.00294 * 14 5 4 36 36 H 1.07995 * 119.58163 * 359.72121 * 16 15 14 37 37 H 1.08994 * 109.47478 * 59.99590 * 20 19 18 38 38 H 1.08996 * 109.46701 * 180.02562 * 20 19 18 39 39 H 1.09005 * 109.46949 * 299.99504 * 20 19 18 40 40 H 1.08995 * 109.47159 * 89.99962 * 22 21 18 41 41 H 1.09000 * 109.47156 * 210.00184 * 22 21 18 42 42 H 1.08999 * 109.46954 * 330.00142 * 22 21 18 43 43 H 1.08000 * 120.76241 * 180.02562 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4427 0.0006 5 7 4.0582 2.8240 0.0000 6 6 4.2374 3.4862 -1.1850 7 1 4.5504 4.5199 -1.1840 8 6 4.0170 2.8290 -2.3877 9 7 3.1325 1.8566 -2.4537 10 14 4.9757 3.3248 -3.9124 11 1 6.2810 2.6168 -3.9283 12 1 4.1999 2.9602 -5.1251 13 1 5.2081 4.7913 -3.8958 14 6 4.3546 3.4966 1.2672 15 6 3.1180 4.2003 1.7636 16 6 2.2260 3.5449 2.5893 17 7 1.1433 4.1538 3.0341 18 6 0.8691 5.4067 2.7101 19 8 -0.2555 5.9941 3.1907 20 6 -1.0907 5.2013 4.0369 21 6 1.7213 6.1264 1.8829 22 6 1.4050 7.5537 1.5170 23 6 2.8656 5.5157 1.3997 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6766 1.9564 -0.8900 31 1 3.9337 0.9287 -0.8891 32 1 3.9329 0.9290 0.8909 33 1 2.9787 1.3971 -3.2940 34 1 5.1507 4.2253 1.1143 35 1 4.6737 2.7594 2.0040 36 1 2.4171 2.5210 2.8747 37 1 -0.5257 4.8882 4.9149 38 1 -1.9532 5.7895 4.3501 39 1 -1.4305 4.3214 3.4907 40 1 1.8513 8.2244 2.2512 41 1 1.8107 7.7742 0.5297 42 1 0.3243 7.6949 1.5056 43 1 3.5471 6.0507 0.7549 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137008426.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:15 Heat of formation + Delta-G solvation = -3.836607 kcal Electronic energy + Delta-G solvation = -22605.132314 eV Core-core repulsion = 19457.754788 eV Total energy + Delta-G solvation = -3147.377526 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -41.59754 -39.11483 -37.83966 -35.16750 -34.54365 -33.88675 -31.85650 -29.62120 -28.53100 -28.11016 -26.95711 -25.19257 -23.79235 -22.94735 -21.65555 -21.53589 -19.25131 -18.64734 -17.95624 -17.05433 -16.88151 -15.89814 -15.75866 -15.39480 -15.27728 -15.14443 -14.96723 -14.53638 -14.48151 -13.90557 -13.57549 -13.51950 -13.33769 -13.29713 -13.15218 -12.86060 -12.78650 -12.49402 -12.39788 -12.20949 -12.10250 -11.80028 -11.70355 -11.61442 -11.30454 -11.01345 -10.55975 -10.44084 -10.13594 -9.13345 -8.78675 -7.76337 -4.98801 0.27641 0.44578 1.50225 1.55731 1.59448 2.22997 2.57579 2.87396 3.30676 3.46356 3.85584 3.97379 4.04445 4.20894 4.35059 4.37867 4.44510 4.46063 4.47064 4.53906 4.58759 4.69575 4.75933 4.81681 4.82335 4.91968 5.04918 5.08428 5.10806 5.23521 5.26217 5.30905 5.34330 5.53007 5.56904 5.62343 5.65158 5.72690 5.97616 6.29632 6.33654 6.40682 6.95040 7.28158 7.99486 8.39150 9.23982 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015044 B = 0.006308 C = 0.005110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.778731 B = 4438.016751 C = 5478.332163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.109 4.109 3 C -0.104 4.104 4 C 0.171 3.829 5 N -0.602 5.602 6 C -0.252 4.252 7 H 0.075 0.925 8 C -0.042 4.042 9 N -0.901 5.901 10 Si 0.940 3.060 11 H -0.292 1.292 12 H -0.305 1.305 13 H -0.277 1.277 14 C 0.191 3.809 15 C -0.168 4.168 16 C 0.129 3.871 17 N -0.549 5.549 18 C 0.284 3.716 19 O -0.318 6.318 20 C 0.040 3.960 21 C -0.165 4.165 22 C -0.092 4.092 23 C -0.043 4.043 24 H 0.034 0.966 25 H 0.064 0.936 26 H 0.047 0.953 27 H 0.043 0.957 28 H 0.057 0.943 29 H 0.023 0.977 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.025 0.975 33 H 0.243 0.757 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.158 0.842 37 H 0.055 0.945 38 H 0.124 0.876 39 H 0.045 0.955 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.051 4.507 11.154 12.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.148 4.148 3 C -0.143 4.143 4 C 0.047 3.953 5 N -0.322 5.322 6 C -0.382 4.382 7 H 0.093 0.907 8 C -0.238 4.238 9 N -0.547 5.547 10 Si 0.770 3.230 11 H -0.220 1.220 12 H -0.233 1.233 13 H -0.202 1.202 14 C 0.064 3.936 15 C -0.174 4.174 16 C -0.026 4.026 17 N -0.272 5.272 18 C 0.105 3.895 19 O -0.226 6.226 20 C -0.055 4.055 21 C -0.167 4.167 22 C -0.149 4.149 23 C -0.069 4.069 24 H 0.053 0.947 25 H 0.083 0.917 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.042 0.958 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.043 0.957 33 H 0.052 0.948 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.175 0.825 37 H 0.074 0.926 38 H 0.142 0.858 39 H 0.064 0.936 40 H 0.101 0.899 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.757 4.224 11.522 13.162 hybrid contribution 0.662 0.221 -1.633 1.776 sum -4.095 4.445 9.889 11.590 Atomic orbital electron populations 1.21653 0.96127 1.01237 1.00479 1.21337 0.95515 0.97604 1.00311 1.21965 0.98101 0.95097 0.99178 1.20963 0.92472 0.84201 0.97705 1.44581 1.75725 1.10877 1.01013 1.19404 1.38283 0.96207 0.84273 0.90697 1.25223 0.99681 0.99599 0.99285 1.70418 1.31383 1.28077 1.24837 0.85684 0.79267 0.77699 0.80341 1.21966 1.23295 1.20229 1.19856 0.91432 0.95258 0.87085 1.21959 1.02244 0.95068 0.98106 1.22232 0.88112 0.98957 0.93337 1.67212 1.22098 1.09759 1.28104 1.19760 0.87884 0.88725 0.93123 1.86164 1.31638 1.40929 1.63863 1.22974 0.93521 0.96198 0.92834 1.20189 0.95689 0.99696 1.01152 1.20547 1.02480 0.89824 1.02052 1.21361 0.95362 0.94289 0.95919 0.94681 0.91697 0.93431 0.93775 0.92403 0.95846 0.92875 0.92291 0.95674 0.94756 0.91736 0.91122 0.82455 0.92618 0.85761 0.93590 0.89865 0.90986 0.91275 0.84175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.60 9.91 71.98 0.71 -3.88 16 2 C -0.11 -4.12 5.93 30.60 0.18 -3.94 16 3 C -0.10 -4.60 4.99 30.60 0.15 -4.45 16 4 C 0.17 7.79 4.99 86.38 0.43 8.23 16 5 N -0.60 -27.57 2.52 -706.36 -1.78 -29.35 16 6 C -0.25 -12.87 9.68 84.03 0.81 -12.06 16 7 H 0.08 3.75 7.98 -2.91 -0.02 3.72 16 8 C -0.04 -2.24 4.97 84.86 0.42 -1.81 16 9 N -0.90 -49.38 8.36 21.65 0.18 -49.20 16 10 Si 0.94 43.60 29.64 68.60 2.03 45.64 16 11 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 12 H -0.31 -14.60 7.11 99.48 0.71 -13.89 16 13 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 14 C 0.19 7.05 5.86 85.63 0.50 7.55 16 15 C -0.17 -6.09 5.43 -19.77 -0.11 -6.19 16 16 C 0.13 4.57 8.84 84.64 0.75 5.31 16 17 N -0.55 -19.57 9.22 -308.93 -2.85 -22.42 16 18 C 0.28 9.79 7.47 84.78 0.63 10.42 16 19 O -0.32 -9.62 9.54 -89.94 -0.86 -10.48 16 20 C 0.04 0.92 10.38 113.37 1.18 2.09 16 21 C -0.16 -5.43 5.91 -19.67 -0.12 -5.54 16 22 C -0.09 -2.37 9.81 71.24 0.70 -1.67 16 23 C -0.04 -1.50 9.53 22.45 0.21 -1.29 16 24 H 0.03 1.25 8.14 -2.39 -0.02 1.24 16 25 H 0.06 1.81 8.14 -2.39 -0.02 1.80 16 26 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.02 1.00 5.65 -2.39 -0.01 0.99 16 30 H 0.05 2.84 6.31 -2.39 -0.02 2.83 16 31 H 0.06 3.07 5.81 -2.39 -0.01 3.06 16 32 H 0.03 1.02 7.86 -2.39 -0.02 1.00 16 33 H 0.24 13.27 8.31 -92.71 -0.77 12.50 16 34 H 0.06 2.27 7.99 -2.39 -0.02 2.26 16 35 H 0.07 2.31 7.83 -2.39 -0.02 2.29 16 36 H 0.16 5.12 7.86 -2.91 -0.02 5.10 16 37 H 0.06 1.27 8.10 -2.39 -0.02 1.25 16 38 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.05 1.15 8.10 -2.38 -0.02 1.13 16 40 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.07 1.75 8.10 -2.39 -0.02 1.73 16 42 H 0.07 1.75 7.55 -2.39 -0.02 1.73 16 43 H 0.14 4.58 8.06 -2.91 -0.02 4.56 16 Total: -1.00 -59.60 346.81 4.17 -55.44 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: 0.97 Total: 17.61 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: 6.46 Total: -7.23 kcal Atomic # 7 Polarization: -96.53 SS G_CDS: -4.44 Total: -100.97 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: -0.86 Total: -10.48 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.64 kcal Total: -59.60 4.17 -55.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137008426.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.602 kcal (2) G-P(sol) polarization free energy of solvation -59.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds