Wall clock time and date at job start Tue Mar 31 2020 00:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47182 * 2 1 4 4 C 1.52997 * 109.47598 * 180.02562 * 3 2 1 5 5 N 1.46891 * 109.47431 * 182.29944 * 4 3 2 6 6 C 1.46903 * 110.99982 * 298.49642 * 5 4 3 7 7 C 1.50697 * 109.47464 * 288.69612 * 6 5 4 8 8 H 1.08003 * 119.99930 * 0.24486 * 7 6 5 9 9 C 1.37879 * 120.00426 * 180.23760 * 7 6 5 10 10 N 1.31513 * 120.00013 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 119.99651 * 0.02562 * 9 7 6 12 12 H 1.48496 * 109.47172 * 89.99773 * 11 9 7 13 13 H 1.48499 * 109.46912 * 209.99631 * 11 9 7 14 14 H 1.48508 * 109.47044 * 329.99740 * 11 9 7 15 15 C 1.46902 * 111.00237 * 62.45184 * 5 4 3 16 16 C 1.50696 * 109.46978 * 66.04857 * 15 5 4 17 17 C 1.38832 * 120.35539 * 89.99756 * 16 15 5 18 18 C 1.38381 * 118.48249 * 180.02562 * 17 16 15 19 19 C 1.38916 * 119.11318 * 0.02562 * 18 17 16 20 20 O 1.35678 * 119.68541 * 180.02562 * 19 18 17 21 21 C 1.42900 * 117.00321 * 179.97438 * 20 19 18 22 22 N 1.32248 * 120.63112 * 359.97314 * 19 18 17 23 23 C 1.31961 * 121.64897 * 0.05193 * 22 19 18 24 24 H 1.08998 * 109.47146 * 299.99899 * 1 2 3 25 25 H 1.08999 * 109.46829 * 60.00210 * 1 2 3 26 26 H 1.08999 * 109.46533 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47330 * 239.99605 * 2 1 3 28 28 H 1.08999 * 109.46829 * 119.99790 * 2 1 3 29 29 H 1.09005 * 109.47306 * 59.99387 * 3 2 1 30 30 H 1.09000 * 109.46745 * 300.00351 * 3 2 1 31 31 H 1.08998 * 109.47069 * 62.29380 * 4 3 2 32 32 H 1.09002 * 109.46500 * 302.29712 * 4 3 2 33 33 H 1.09006 * 109.46887 * 48.69746 * 6 5 4 34 34 H 1.09000 * 109.47377 * 168.69502 * 6 5 4 35 35 H 0.96997 * 119.99454 * 180.02562 * 10 9 7 36 36 H 1.08998 * 109.46736 * 306.04527 * 15 5 4 37 37 H 1.09004 * 109.47018 * 186.04780 * 15 5 4 38 38 H 1.07996 * 120.76165 * 0.02562 * 17 16 15 39 39 H 1.08007 * 120.44282 * 179.72875 * 18 17 16 40 40 H 1.08996 * 109.47513 * 179.97438 * 21 20 19 41 41 H 1.08997 * 109.46740 * 299.99949 * 21 20 19 42 42 H 1.09003 * 109.46856 * 59.99519 * 21 20 19 43 43 H 1.07997 * 119.58352 * 179.97438 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0597 2.8264 0.0549 6 6 3.6177 3.5888 -1.1204 7 6 4.3662 3.1127 -2.3387 8 1 5.0943 2.3199 -2.2495 9 6 4.1215 3.6889 -3.5671 10 7 4.7744 3.2729 -4.6303 11 14 2.8626 5.0603 -3.7213 12 1 3.5306 6.3707 -3.5174 13 1 2.2514 5.0214 -5.0741 14 1 1.8048 4.8789 -2.6948 15 6 3.6377 3.4847 1.2986 16 6 4.3095 2.8193 2.4720 17 6 5.5406 3.2733 2.9256 18 6 6.1227 2.6335 4.0057 19 6 5.4600 1.5647 4.5958 20 8 6.0199 0.9293 5.6558 21 6 5.2886 -0.1618 6.2185 22 7 4.2879 1.1613 4.1348 23 6 3.7081 1.7509 3.1064 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9330 0.9650 -0.9107 32 1 3.9337 0.8934 0.8678 33 1 2.5483 3.4391 -1.2695 34 1 3.8177 4.6486 -0.9624 35 1 4.6024 3.6786 -5.4944 36 1 2.5560 3.4021 1.4043 37 1 3.9204 4.5369 1.2667 38 1 6.0327 4.1067 2.4465 39 1 7.0819 2.9577 4.3819 40 1 5.8468 -0.5799 7.0561 41 1 4.3191 0.1926 6.5682 42 1 5.1423 -0.9308 5.4599 43 1 2.7506 1.3937 2.7573 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137035678.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:00 Heat of formation + Delta-G solvation = -5.265819 kcal Electronic energy + Delta-G solvation = -21951.980267 eV Core-core repulsion = 18804.540766 eV Total energy + Delta-G solvation = -3147.439501 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.60171 -38.45764 -37.18470 -34.11874 -32.81012 -32.25290 -31.09868 -28.67168 -27.93029 -26.93135 -24.89399 -23.33436 -23.15132 -21.59276 -21.24473 -19.27450 -18.35688 -17.05964 -16.77108 -16.01451 -15.41408 -15.21709 -14.86926 -14.42041 -14.38329 -14.23919 -14.01566 -13.47289 -13.21543 -12.97099 -12.63800 -12.44899 -12.32794 -12.13237 -11.76995 -11.47936 -11.37199 -11.12601 -11.04697 -10.82904 -10.70497 -10.54978 -10.36241 -10.02970 -9.88005 -9.67888 -9.48915 -9.30152 -8.57063 -8.31039 -7.31813 -6.05285 -4.02025 1.24100 1.40461 3.10219 3.26540 3.34578 3.35052 3.84011 4.37437 4.40629 4.84907 4.97393 5.06936 5.14480 5.15539 5.22083 5.22738 5.23953 5.27738 5.35836 5.44344 5.53604 5.60623 5.71589 5.85330 5.90606 6.02546 6.03749 6.05571 6.09552 6.19453 6.32199 6.46543 6.49098 6.54092 6.56971 6.79436 6.92199 7.01952 7.25107 7.59408 7.86362 7.91814 8.00898 8.65439 9.04818 9.56403 11.08041 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018165 B = 0.004669 C = 0.004020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.095346 B = 5995.140706 C = 6964.082520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C -0.160 4.160 4 C 0.062 3.938 5 N -0.519 5.519 6 C 0.158 3.842 7 C -0.504 4.504 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.900 5.900 11 Si 0.872 3.128 12 H -0.276 1.276 13 H -0.287 1.287 14 H -0.268 1.268 15 C 0.091 3.909 16 C -0.147 4.147 17 C -0.022 4.022 18 C -0.190 4.190 19 C 0.306 3.694 20 O -0.313 6.313 21 C 0.042 3.958 22 N -0.541 5.541 23 C 0.141 3.859 24 H 0.049 0.951 25 H 0.053 0.947 26 H 0.048 0.952 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.056 0.944 33 H -0.002 1.002 34 H 0.021 0.979 35 H 0.263 0.737 36 H 0.040 0.960 37 H 0.078 0.922 38 H 0.143 0.857 39 H 0.138 0.862 40 H 0.092 0.908 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.762 -3.633 17.849 18.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.199 4.199 4 C -0.066 4.066 5 N -0.241 5.241 6 C 0.032 3.968 7 C -0.543 4.543 8 H 0.098 0.902 9 C -0.133 4.133 10 N -0.540 5.540 11 Si 0.699 3.301 12 H -0.202 1.202 13 H -0.213 1.213 14 H -0.193 1.193 15 C -0.038 4.038 16 C -0.150 4.150 17 C -0.048 4.048 18 C -0.211 4.211 19 C 0.127 3.873 20 O -0.220 6.220 21 C -0.053 4.053 22 N -0.264 5.264 23 C -0.015 4.015 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.104 0.896 32 H 0.075 0.925 33 H 0.016 0.984 34 H 0.039 0.961 35 H 0.073 0.927 36 H 0.058 0.942 37 H 0.097 0.903 38 H 0.161 0.839 39 H 0.156 0.844 40 H 0.110 0.890 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -3.374 -4.263 18.188 18.984 hybrid contribution -1.316 1.273 -0.671 1.950 sum -4.690 -2.989 17.517 18.379 Atomic orbital electron populations 1.21772 0.96506 1.00965 1.01538 1.21431 0.95238 0.97244 1.01800 1.22294 0.98930 0.96672 1.01993 1.22115 0.91394 0.90911 1.02209 1.62236 1.59001 1.02081 1.00764 1.20270 0.94592 0.93228 0.88713 1.20998 1.22694 1.20799 0.89764 0.90219 1.24883 0.95896 0.96720 0.95788 1.69891 1.42007 1.42652 0.99423 0.86914 0.82432 0.83179 0.77529 1.20210 1.21274 1.19276 1.20988 0.96482 0.97927 0.88397 1.20753 0.96710 0.98664 0.98861 1.21347 0.93166 0.97866 0.92450 1.21037 1.02670 0.97821 0.99534 1.19803 0.89269 0.90453 0.87756 1.86211 1.46520 1.46361 1.42917 1.22791 0.96818 0.87750 0.97972 1.67274 1.10714 1.32416 1.16019 1.22285 0.98654 0.91178 0.89388 0.93234 0.92790 0.93239 0.91778 0.92569 0.92856 0.90847 0.89641 0.92538 0.98411 0.96089 0.92709 0.94163 0.90343 0.83912 0.84414 0.88987 0.92539 0.92398 0.82873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.91 37.16 0.37 -1.45 16 2 C -0.12 -1.63 5.93 -26.73 -0.16 -1.79 16 3 C -0.16 -2.54 4.44 -26.73 -0.12 -2.66 16 4 C 0.06 1.12 4.84 -3.83 -0.02 1.10 16 5 N -0.52 -10.16 4.65 -237.52 -1.11 -11.26 16 6 C 0.16 3.62 3.65 -4.98 -0.02 3.60 16 7 C -0.50 -13.89 9.12 -34.44 -0.31 -14.21 16 8 H 0.08 2.43 7.70 -52.48 -0.40 2.02 16 9 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 10 N -0.90 -27.24 13.96 55.43 0.77 -26.46 16 11 Si 0.87 21.00 27.46 -169.99 -4.67 16.33 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 H -0.27 -6.16 6.55 56.52 0.37 -5.79 16 15 C 0.09 1.44 4.93 -4.98 -0.02 1.41 16 16 C -0.15 -2.14 4.90 -104.47 -0.51 -2.65 16 17 C -0.02 -0.30 9.85 -39.31 -0.39 -0.69 16 18 C -0.19 -2.50 10.04 -39.28 -0.39 -2.89 16 19 C 0.31 4.35 7.49 -17.12 -0.13 4.22 16 20 O -0.31 -4.06 10.48 -18.74 -0.20 -4.26 16 21 C 0.04 0.41 10.38 101.05 1.05 1.46 16 22 N -0.54 -7.90 9.22 -13.33 -0.12 -8.02 16 23 C 0.14 1.99 9.09 -17.57 -0.16 1.83 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.77 5.60 -51.93 -0.29 0.48 16 30 H 0.07 1.35 6.32 -51.93 -0.33 1.02 16 31 H 0.09 1.78 7.19 -51.93 -0.37 1.41 16 32 H 0.06 0.95 6.00 -51.93 -0.31 0.64 16 33 H 0.00 -0.04 4.96 -51.93 -0.26 -0.30 16 34 H 0.02 0.48 7.24 -51.93 -0.38 0.11 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.04 0.60 5.98 -51.93 -0.31 0.29 16 37 H 0.08 1.20 7.82 -51.93 -0.41 0.79 16 38 H 0.14 1.74 8.06 -52.49 -0.42 1.32 16 39 H 0.14 1.51 8.06 -52.48 -0.42 1.09 16 40 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.55 8.10 -51.93 -0.42 0.12 16 42 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 43 H 0.15 1.98 7.23 -52.49 -0.38 1.60 16 LS Contribution 342.10 15.07 5.16 5.16 Total: -1.00 -30.53 342.10 -7.91 -38.44 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -6.83 Total: 0.95 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: -0.91 Total: -10.87 kcal Atomic # 7 Polarization: -45.29 SS G_CDS: -0.45 Total: -45.74 kcal Atomic # 8 Polarization: -4.06 SS G_CDS: -0.20 Total: -4.26 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.67 Total: 16.33 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.53 -7.91 -38.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137035678.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.171 kcal (2) G-P(sol) polarization free energy of solvation -30.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds