Wall clock time and date at job start Tue Mar 31 2020 00:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47182 * 2 1 4 4 C 1.52997 * 109.47598 * 180.02562 * 3 2 1 5 5 N 1.46891 * 109.47431 * 182.29944 * 4 3 2 6 6 C 1.46903 * 110.99982 * 298.49642 * 5 4 3 7 7 C 1.50697 * 109.47464 * 288.69612 * 6 5 4 8 8 H 1.08003 * 119.99930 * 0.24486 * 7 6 5 9 9 C 1.37879 * 120.00426 * 180.23760 * 7 6 5 10 10 N 1.31513 * 120.00013 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 119.99651 * 0.02562 * 9 7 6 12 12 H 1.48496 * 109.47172 * 89.99773 * 11 9 7 13 13 H 1.48499 * 109.46912 * 209.99631 * 11 9 7 14 14 H 1.48508 * 109.47044 * 329.99740 * 11 9 7 15 15 C 1.46902 * 111.00237 * 62.45184 * 5 4 3 16 16 C 1.50696 * 109.46978 * 66.04857 * 15 5 4 17 17 C 1.38832 * 120.35539 * 89.99756 * 16 15 5 18 18 C 1.38381 * 118.48249 * 180.02562 * 17 16 15 19 19 C 1.38916 * 119.11318 * 0.02562 * 18 17 16 20 20 O 1.35678 * 119.68541 * 180.02562 * 19 18 17 21 21 C 1.42900 * 117.00321 * 179.97438 * 20 19 18 22 22 N 1.32248 * 120.63112 * 359.97314 * 19 18 17 23 23 C 1.31961 * 121.64897 * 0.05193 * 22 19 18 24 24 H 1.08998 * 109.47146 * 299.99899 * 1 2 3 25 25 H 1.08999 * 109.46829 * 60.00210 * 1 2 3 26 26 H 1.08999 * 109.46533 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47330 * 239.99605 * 2 1 3 28 28 H 1.08999 * 109.46829 * 119.99790 * 2 1 3 29 29 H 1.09005 * 109.47306 * 59.99387 * 3 2 1 30 30 H 1.09000 * 109.46745 * 300.00351 * 3 2 1 31 31 H 1.08998 * 109.47069 * 62.29380 * 4 3 2 32 32 H 1.09002 * 109.46500 * 302.29712 * 4 3 2 33 33 H 1.09006 * 109.46887 * 48.69746 * 6 5 4 34 34 H 1.09000 * 109.47377 * 168.69502 * 6 5 4 35 35 H 0.96997 * 119.99454 * 180.02562 * 10 9 7 36 36 H 1.08998 * 109.46736 * 306.04527 * 15 5 4 37 37 H 1.09004 * 109.47018 * 186.04780 * 15 5 4 38 38 H 1.07996 * 120.76165 * 0.02562 * 17 16 15 39 39 H 1.08007 * 120.44282 * 179.72875 * 18 17 16 40 40 H 1.08996 * 109.47513 * 179.97438 * 21 20 19 41 41 H 1.08997 * 109.46740 * 299.99949 * 21 20 19 42 42 H 1.09003 * 109.46856 * 59.99519 * 21 20 19 43 43 H 1.07997 * 119.58352 * 179.97438 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0597 2.8264 0.0549 6 6 3.6177 3.5888 -1.1204 7 6 4.3662 3.1127 -2.3387 8 1 5.0943 2.3199 -2.2495 9 6 4.1215 3.6889 -3.5671 10 7 4.7744 3.2729 -4.6303 11 14 2.8626 5.0603 -3.7213 12 1 3.5306 6.3707 -3.5174 13 1 2.2514 5.0214 -5.0741 14 1 1.8048 4.8789 -2.6948 15 6 3.6377 3.4847 1.2986 16 6 4.3095 2.8193 2.4720 17 6 5.5406 3.2733 2.9256 18 6 6.1227 2.6335 4.0057 19 6 5.4600 1.5647 4.5958 20 8 6.0199 0.9293 5.6558 21 6 5.2886 -0.1618 6.2185 22 7 4.2879 1.1613 4.1348 23 6 3.7081 1.7509 3.1064 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9330 0.9650 -0.9107 32 1 3.9337 0.8934 0.8678 33 1 2.5483 3.4391 -1.2695 34 1 3.8177 4.6486 -0.9624 35 1 4.6024 3.6786 -5.4944 36 1 2.5560 3.4021 1.4043 37 1 3.9204 4.5369 1.2667 38 1 6.0327 4.1067 2.4465 39 1 7.0819 2.9577 4.3819 40 1 5.8468 -0.5799 7.0561 41 1 4.3191 0.1926 6.5682 42 1 5.1423 -0.9308 5.4599 43 1 2.7506 1.3937 2.7573 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137035678.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:59 Heat of formation + Delta-G solvation = -26.380516 kcal Electronic energy + Delta-G solvation = -21952.895869 eV Core-core repulsion = 18804.540766 eV Total energy + Delta-G solvation = -3148.355103 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.65894 -39.67457 -38.40625 -35.38436 -34.67393 -33.48812 -32.35449 -30.20539 -29.17256 -28.08905 -26.16187 -24.73106 -24.36809 -22.97304 -22.41844 -20.78911 -19.34498 -18.86051 -18.10267 -17.02865 -16.74362 -16.66879 -16.15334 -15.90057 -15.74391 -15.39045 -15.15258 -14.71067 -14.52011 -14.19421 -14.03999 -13.92265 -13.55686 -13.24790 -13.10746 -12.78665 -12.71649 -12.44009 -12.29213 -12.23197 -12.03942 -11.92786 -11.81848 -11.71764 -11.40319 -11.28139 -10.78445 -10.72455 -10.57540 -9.39947 -8.83144 -8.23761 -6.25804 0.17581 0.33116 1.37265 1.38467 1.48593 2.17803 2.37389 2.73597 3.10283 3.35867 3.45282 3.84570 3.98006 4.02878 4.07850 4.10276 4.26878 4.32926 4.45406 4.46459 4.48755 4.55159 4.64511 4.72894 4.77476 4.79543 4.85103 4.86913 4.94929 5.01505 5.08394 5.13775 5.20048 5.35161 5.42798 5.44637 5.48583 5.53314 5.61665 6.03484 6.26067 6.42131 6.70453 6.80626 6.84933 7.37159 8.93363 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018165 B = 0.004669 C = 0.004020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.095346 B = 5995.140706 C = 6964.082520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C -0.150 4.150 4 C 0.069 3.931 5 N -0.537 5.537 6 C 0.169 3.831 7 C -0.507 4.507 8 H 0.031 0.969 9 C 0.007 3.993 10 N -0.952 5.952 11 Si 0.944 3.056 12 H -0.266 1.266 13 H -0.287 1.287 14 H -0.246 1.246 15 C 0.095 3.905 16 C -0.159 4.159 17 C -0.026 4.026 18 C -0.191 4.191 19 C 0.295 3.705 20 O -0.321 6.321 21 C 0.038 3.962 22 N -0.551 5.551 23 C 0.139 3.861 24 H 0.062 0.938 25 H 0.044 0.956 26 H 0.064 0.936 27 H 0.048 0.952 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.047 0.953 31 H 0.044 0.956 32 H 0.070 0.930 33 H 0.003 0.997 34 H 0.028 0.972 35 H 0.265 0.735 36 H 0.055 0.945 37 H 0.085 0.915 38 H 0.155 0.845 39 H 0.158 0.842 40 H 0.122 0.878 41 H 0.057 0.943 42 H 0.052 0.948 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.281 -2.846 20.133 21.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C -0.189 4.189 4 C -0.059 4.059 5 N -0.259 5.259 6 C 0.042 3.958 7 C -0.546 4.546 8 H 0.050 0.950 9 C -0.190 4.190 10 N -0.593 5.593 11 Si 0.768 3.232 12 H -0.191 1.191 13 H -0.213 1.213 14 H -0.170 1.170 15 C -0.032 4.032 16 C -0.161 4.161 17 C -0.052 4.052 18 C -0.212 4.212 19 C 0.117 3.883 20 O -0.228 6.228 21 C -0.057 4.057 22 N -0.275 5.275 23 C -0.017 4.017 24 H 0.081 0.919 25 H 0.063 0.937 26 H 0.083 0.917 27 H 0.066 0.934 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.088 0.912 33 H 0.021 0.979 34 H 0.046 0.954 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.104 0.896 38 H 0.172 0.828 39 H 0.176 0.824 40 H 0.141 0.859 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -4.894 -3.488 20.513 21.375 hybrid contribution -0.721 0.902 -1.289 1.731 sum -5.616 -2.586 19.224 20.194 Atomic orbital electron populations 1.21743 0.94847 1.02088 1.01757 1.21414 0.96661 0.95638 1.01799 1.22175 0.96907 0.98168 1.01623 1.21972 0.93084 0.90142 1.00691 1.62068 1.60031 1.02534 1.01311 1.20002 0.93907 0.93623 0.88251 1.21241 1.21854 1.19345 0.92117 0.95025 1.25824 0.98263 0.99694 0.95227 1.70063 1.44360 1.44728 1.00183 0.85758 0.79941 0.79601 0.77911 1.19054 1.21266 1.16981 1.20985 0.97464 0.98038 0.86749 1.20672 0.97350 0.99312 0.98805 1.21558 0.92915 0.98169 0.92529 1.21276 1.03349 0.97383 0.99170 1.20102 0.89309 0.90805 0.88116 1.86208 1.47038 1.47059 1.42509 1.23021 0.97349 0.86754 0.98573 1.67299 1.11130 1.32726 1.16304 1.22457 0.99065 0.90922 0.89248 0.91865 0.93695 0.91735 0.93362 0.91055 0.90687 0.93462 0.93759 0.91165 0.97942 0.95375 0.92647 0.92725 0.89646 0.82767 0.82435 0.85945 0.92472 0.92960 0.81709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 9.91 71.98 0.71 -2.52 16 2 C -0.12 -3.06 5.93 30.60 0.18 -2.88 16 3 C -0.15 -4.60 4.44 30.59 0.14 -4.47 16 4 C 0.07 2.52 4.84 86.30 0.42 2.94 16 5 N -0.54 -20.83 4.65 -905.38 -4.21 -25.04 16 6 C 0.17 7.68 3.65 85.56 0.31 7.99 16 7 C -0.51 -28.86 9.12 25.60 0.23 -28.63 16 8 H 0.03 2.05 7.70 -2.91 -0.02 2.02 16 9 C 0.01 0.38 5.47 84.66 0.46 0.84 16 10 N -0.95 -59.59 13.96 21.45 0.30 -59.29 16 11 Si 0.94 43.21 27.46 68.60 1.88 45.09 16 12 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 13 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 14 H -0.25 -10.32 6.55 99.48 0.65 -9.67 16 15 C 0.10 2.84 4.93 85.56 0.42 3.26 16 16 C -0.16 -4.33 4.90 -19.77 -0.10 -4.42 16 17 C -0.03 -0.66 9.85 22.45 0.22 -0.44 16 18 C -0.19 -4.68 10.04 22.47 0.23 -4.45 16 19 C 0.30 7.90 7.49 84.79 0.63 8.53 16 20 O -0.32 -7.75 10.48 -89.96 -0.94 -8.69 16 21 C 0.04 0.67 10.38 113.37 1.18 1.84 16 22 N -0.55 -15.11 9.22 -308.95 -2.85 -17.95 16 23 C 0.14 3.65 9.09 84.63 0.77 4.42 16 24 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.07 1.97 5.60 -2.38 -0.01 1.96 16 30 H 0.05 1.71 6.32 -2.39 -0.02 1.69 16 31 H 0.04 1.95 7.19 -2.39 -0.02 1.93 16 32 H 0.07 2.34 6.00 -2.39 -0.01 2.32 16 33 H 0.00 0.13 4.96 -2.38 -0.01 0.12 16 34 H 0.03 1.25 7.24 -2.39 -0.02 1.23 16 35 H 0.26 15.49 8.31 -92.71 -0.77 14.71 16 36 H 0.05 1.47 5.98 -2.39 -0.01 1.46 16 37 H 0.09 2.41 7.82 -2.38 -0.02 2.40 16 38 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 39 H 0.16 3.12 8.06 -2.91 -0.02 3.09 16 40 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.06 1.00 8.10 -2.39 -0.02 0.98 16 42 H 0.05 0.98 8.10 -2.39 -0.02 0.96 16 43 H 0.17 3.82 7.23 -2.91 -0.02 3.80 16 Total: -1.00 -67.78 342.10 0.92 -66.86 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 0.93 Total: 17.02 kcal Atomic # 6 Polarization: -23.80 SS G_CDS: 5.81 Total: -17.99 kcal Atomic # 7 Polarization: -95.53 SS G_CDS: -6.76 Total: -102.29 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: -0.94 Total: -8.69 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 1.88 Total: 45.09 kcal Total: -67.78 0.92 -66.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137035678.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.479 kcal (2) G-P(sol) polarization free energy of solvation -67.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds