Wall clock time and date at job start Tue Mar 31 2020 00:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47020 * 2 1 4 4 C 1.53003 * 109.47020 * 179.97438 * 3 2 1 5 5 N 1.46898 * 109.47179 * 178.30927 * 4 3 2 6 6 C 1.46896 * 111.00076 * 298.12273 * 5 4 3 7 7 C 1.50706 * 109.47006 * 294.05505 * 6 5 4 8 8 H 1.08001 * 119.99819 * 355.62032 * 7 6 5 9 9 C 1.37881 * 120.00047 * 175.61348 * 7 6 5 10 10 N 1.31510 * 119.99851 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99944 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.46746 * 60.00051 * 11 9 7 13 13 H 1.48492 * 109.46921 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47038 * 300.00226 * 11 9 7 15 15 C 1.46903 * 110.99595 * 62.07109 * 5 4 3 16 16 C 1.50696 * 109.47075 * 66.04733 * 15 5 4 17 17 C 1.38095 * 119.58532 * 95.01945 * 16 15 5 18 18 C 1.38781 * 119.28875 * 179.97438 * 17 16 15 19 19 C 1.38422 * 118.48761 * 359.74281 * 18 17 16 20 20 C 1.38881 * 119.11022 * 0.50206 * 19 18 17 21 21 O 1.35669 * 119.68300 * 179.77051 * 20 19 18 22 22 C 1.42904 * 117.00276 * 179.72133 * 21 20 19 23 23 N 1.31933 * 119.58529 * 275.00064 * 16 15 5 24 24 H 1.09004 * 109.46917 * 300.00116 * 1 2 3 25 25 H 1.09006 * 109.46930 * 60.00117 * 1 2 3 26 26 H 1.09003 * 109.46957 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46917 * 239.99884 * 2 1 3 28 28 H 1.08994 * 109.47209 * 119.99700 * 2 1 3 29 29 H 1.08999 * 109.47452 * 59.99680 * 3 2 1 30 30 H 1.09006 * 109.47174 * 299.99734 * 3 2 1 31 31 H 1.09001 * 109.47011 * 58.31377 * 4 3 2 32 32 H 1.08995 * 109.46930 * 298.31297 * 4 3 2 33 33 H 1.08993 * 109.47613 * 54.05755 * 6 5 4 34 34 H 1.09008 * 109.47024 * 174.06143 * 6 5 4 35 35 H 0.97004 * 120.00139 * 179.97438 * 10 9 7 36 36 H 1.08996 * 109.47533 * 306.04293 * 15 5 4 37 37 H 1.09001 * 109.47048 * 186.04329 * 15 5 4 38 38 H 1.08007 * 120.35374 * 359.95247 * 17 16 15 39 39 H 1.08004 * 120.75905 * 180.02562 * 18 17 16 40 40 H 1.07996 * 120.44756 * 180.24501 * 19 18 17 41 41 H 1.09003 * 109.46787 * 300.00242 * 22 21 20 42 42 H 1.09007 * 109.46601 * 59.99649 * 22 21 20 43 43 H 1.08991 * 109.47449 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0597 2.8269 -0.0402 6 6 3.6263 3.5025 -1.2705 7 6 4.2848 2.8518 -2.4596 8 1 5.0115 2.0666 -2.3119 9 6 3.9593 3.2586 -3.7362 10 7 3.0746 4.2149 -3.9160 11 14 4.7750 2.4515 -5.2102 12 1 4.4722 0.9976 -5.2088 13 1 4.2570 3.0644 -6.4596 14 1 6.2444 2.6512 -5.1337 15 6 3.6290 3.5729 1.1498 16 6 4.2923 2.9939 2.3728 17 6 5.4611 3.5571 2.8457 18 6 6.0664 3.0194 3.9728 19 6 5.4684 1.9336 4.5888 20 6 4.2955 1.4155 4.0552 21 8 3.7021 0.3485 4.6469 22 6 2.4948 -0.1339 4.0538 23 7 3.7487 1.9556 2.9787 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6767 1.9564 -0.8901 31 1 3.9337 0.9026 -0.8736 32 1 3.9329 0.9553 0.9056 33 1 2.5435 3.4234 -1.3663 34 1 3.9114 4.5538 -1.2274 35 1 2.8459 4.5015 -4.8141 36 1 2.5466 3.4980 1.2536 37 1 3.9123 4.6201 1.0443 38 1 5.8997 4.4068 2.3434 39 1 6.9808 3.4413 4.3632 40 1 5.9101 1.4926 5.4702 41 1 1.7458 0.6580 4.0589 42 1 2.6920 -0.4408 3.0266 43 1 2.1255 -0.9865 4.6236 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137532164.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:22 Heat of formation + Delta-G solvation = -7.160092 kcal Electronic energy + Delta-G solvation = -22380.653823 eV Core-core repulsion = 19233.132180 eV Total energy + Delta-G solvation = -3147.521643 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.52006 -38.16188 -37.06684 -33.88603 -32.80124 -32.11358 -30.91223 -28.32137 -27.84012 -26.70950 -24.89979 -23.37117 -22.72453 -21.88823 -21.07660 -19.36212 -17.93788 -16.60644 -16.14803 -15.96020 -15.82003 -15.17627 -14.76709 -14.64481 -14.19486 -14.02359 -13.81213 -13.36229 -12.95599 -12.74307 -12.39041 -12.23094 -12.10537 -11.99840 -11.58991 -11.20160 -11.15304 -11.00296 -10.88281 -10.73626 -10.60056 -10.47418 -10.41871 -9.93966 -9.71019 -9.61807 -9.38061 -9.15340 -8.41764 -8.26461 -7.14820 -6.01246 -4.01805 1.31380 1.47267 3.18683 3.34364 3.38329 3.41515 3.91323 4.37278 4.45883 4.93437 5.16957 5.18323 5.22860 5.32130 5.33293 5.34699 5.40321 5.43585 5.46932 5.61634 5.69729 5.77460 5.86638 5.97352 6.13669 6.18710 6.20129 6.25078 6.32799 6.39006 6.40084 6.55904 6.61498 6.66597 6.84683 7.06362 7.31926 7.35841 7.46004 7.81793 8.06862 8.11726 8.22547 8.55557 9.05601 9.61996 11.09359 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016942 B = 0.005304 C = 0.004407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.296134 B = 5277.847405 C = 6352.540248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C -0.151 4.151 4 C 0.069 3.931 5 N -0.528 5.528 6 C 0.190 3.810 7 C -0.503 4.503 8 H 0.061 0.939 9 C 0.057 3.943 10 N -0.899 5.899 11 Si 0.895 3.105 12 H -0.278 1.278 13 H -0.288 1.288 14 H -0.277 1.277 15 C 0.093 3.907 16 C 0.193 3.807 17 C -0.193 4.193 18 C -0.044 4.044 19 C -0.204 4.204 20 C 0.314 3.686 21 O -0.314 6.314 22 C 0.041 3.959 23 N -0.528 5.528 24 H 0.048 0.952 25 H 0.053 0.947 26 H 0.045 0.955 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.005 0.995 34 H 0.025 0.975 35 H 0.261 0.739 36 H 0.048 0.952 37 H 0.084 0.916 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.057 0.943 42 H 0.061 0.939 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.219 -5.083 15.541 16.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C -0.190 4.190 4 C -0.059 4.059 5 N -0.251 5.251 6 C 0.065 3.935 7 C -0.542 4.542 8 H 0.079 0.921 9 C -0.144 4.144 10 N -0.539 5.539 11 Si 0.723 3.277 12 H -0.203 1.203 13 H -0.214 1.214 14 H -0.202 1.202 15 C -0.036 4.036 16 C 0.056 3.944 17 C -0.213 4.213 18 C -0.070 4.070 19 C -0.224 4.224 20 C 0.135 3.865 21 O -0.221 6.221 22 C -0.054 4.054 23 N -0.252 5.252 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.022 0.978 34 H 0.043 0.957 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.103 0.897 38 H 0.155 0.845 39 H 0.155 0.845 40 H 0.152 0.848 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.491 -5.488 15.284 16.247 hybrid contribution 0.069 -0.034 -0.740 0.744 sum -0.422 -5.522 14.544 15.562 Atomic orbital electron populations 1.21761 0.96689 1.00597 1.01569 1.21390 0.95044 0.97743 1.01085 1.22158 0.98698 0.96199 1.01946 1.22011 0.91881 0.90937 1.01098 1.62405 1.59045 1.02088 1.01609 1.19800 0.94807 0.94075 0.84794 1.21079 1.23314 1.19916 0.89878 0.92058 1.24948 0.95291 0.95278 0.98922 1.69941 1.32891 1.28952 1.22083 0.86601 0.79783 0.79512 0.81761 1.20331 1.21407 1.20218 1.21058 0.97351 0.97500 0.87643 1.21020 0.91251 0.88560 0.93524 1.21831 0.97462 1.03685 0.98341 1.21347 0.98363 0.93469 0.93811 1.20937 0.96772 1.00543 1.04186 1.19809 0.90095 0.87334 0.89213 1.86193 1.40092 1.43178 1.52628 1.22830 0.84434 0.98929 0.99201 1.67190 1.35441 1.13227 1.09373 0.93298 0.92772 0.93549 0.92313 0.93007 0.92603 0.90997 0.90669 0.92519 0.97777 0.95653 0.92935 0.93380 0.89746 0.84463 0.84498 0.84790 0.92450 0.92043 0.89126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.91 37.16 0.37 -1.67 16 2 C -0.11 -1.78 5.93 -26.73 -0.16 -1.94 16 3 C -0.15 -2.78 4.56 -26.73 -0.12 -2.90 16 4 C 0.07 1.38 4.88 -3.82 -0.02 1.36 16 5 N -0.53 -11.24 4.69 -237.52 -1.11 -12.36 16 6 C 0.19 4.79 4.51 -4.98 -0.02 4.77 16 7 C -0.50 -13.89 8.40 -34.44 -0.29 -14.18 16 8 H 0.06 1.70 7.28 -52.49 -0.38 1.32 16 9 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 10 N -0.90 -26.29 13.29 55.43 0.74 -25.55 16 11 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 15 C 0.09 1.68 5.06 -4.98 -0.03 1.66 16 16 C 0.19 3.17 5.70 -82.60 -0.47 2.70 16 17 C -0.19 -2.72 9.71 -39.43 -0.38 -3.10 16 18 C -0.04 -0.53 10.17 -39.31 -0.40 -0.93 16 19 C -0.20 -2.60 10.04 -39.28 -0.39 -2.99 16 20 C 0.31 4.68 7.49 -17.12 -0.13 4.56 16 21 O -0.31 -4.34 10.48 -18.71 -0.20 -4.54 16 22 C 0.04 0.48 10.38 101.05 1.05 1.53 16 23 N -0.53 -8.55 7.65 -9.55 -0.07 -8.63 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.05 0.74 7.70 -51.93 -0.40 0.34 16 29 H 0.06 1.01 6.41 -51.93 -0.33 0.67 16 30 H 0.07 1.54 6.24 -51.93 -0.32 1.21 16 31 H 0.07 1.66 6.89 -51.93 -0.36 1.30 16 32 H 0.06 1.10 6.23 -51.93 -0.32 0.77 16 33 H 0.00 0.12 6.03 -51.93 -0.31 -0.19 16 34 H 0.03 0.68 7.93 -51.92 -0.41 0.27 16 35 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.05 0.88 6.10 -51.93 -0.32 0.57 16 37 H 0.08 1.44 7.83 -51.93 -0.41 1.04 16 38 H 0.14 1.76 8.06 -52.48 -0.42 1.34 16 39 H 0.14 1.18 8.06 -52.48 -0.42 0.76 16 40 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 41 H 0.06 0.68 8.10 -51.93 -0.42 0.25 16 42 H 0.06 0.77 7.66 -51.93 -0.40 0.37 16 43 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 346.75 15.07 5.23 5.23 Total: -1.00 -29.88 346.75 -8.44 -38.31 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -6.90 Total: 0.63 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: -1.09 Total: -9.65 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: -0.45 Total: -46.54 kcal Atomic # 8 Polarization: -4.34 SS G_CDS: -0.20 Total: -4.54 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.88 -8.44 -38.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137532164.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.154 kcal (2) G-P(sol) polarization free energy of solvation -29.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds