Wall clock time and date at job start Tue Mar 31 2020 00:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47020 * 2 1 4 4 C 1.53003 * 109.47020 * 179.97438 * 3 2 1 5 5 N 1.46898 * 109.47179 * 178.30927 * 4 3 2 6 6 C 1.46896 * 111.00076 * 298.12273 * 5 4 3 7 7 C 1.50706 * 109.47006 * 294.05505 * 6 5 4 8 8 H 1.08001 * 119.99819 * 355.62032 * 7 6 5 9 9 C 1.37881 * 120.00047 * 175.61348 * 7 6 5 10 10 N 1.31510 * 119.99851 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99944 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.46746 * 60.00051 * 11 9 7 13 13 H 1.48492 * 109.46921 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47038 * 300.00226 * 11 9 7 15 15 C 1.46903 * 110.99595 * 62.07109 * 5 4 3 16 16 C 1.50696 * 109.47075 * 66.04733 * 15 5 4 17 17 C 1.38095 * 119.58532 * 95.01945 * 16 15 5 18 18 C 1.38781 * 119.28875 * 179.97438 * 17 16 15 19 19 C 1.38422 * 118.48761 * 359.74281 * 18 17 16 20 20 C 1.38881 * 119.11022 * 0.50206 * 19 18 17 21 21 O 1.35669 * 119.68300 * 179.77051 * 20 19 18 22 22 C 1.42904 * 117.00276 * 179.72133 * 21 20 19 23 23 N 1.31933 * 119.58529 * 275.00064 * 16 15 5 24 24 H 1.09004 * 109.46917 * 300.00116 * 1 2 3 25 25 H 1.09006 * 109.46930 * 60.00117 * 1 2 3 26 26 H 1.09003 * 109.46957 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46917 * 239.99884 * 2 1 3 28 28 H 1.08994 * 109.47209 * 119.99700 * 2 1 3 29 29 H 1.08999 * 109.47452 * 59.99680 * 3 2 1 30 30 H 1.09006 * 109.47174 * 299.99734 * 3 2 1 31 31 H 1.09001 * 109.47011 * 58.31377 * 4 3 2 32 32 H 1.08995 * 109.46930 * 298.31297 * 4 3 2 33 33 H 1.08993 * 109.47613 * 54.05755 * 6 5 4 34 34 H 1.09008 * 109.47024 * 174.06143 * 6 5 4 35 35 H 0.97004 * 120.00139 * 179.97438 * 10 9 7 36 36 H 1.08996 * 109.47533 * 306.04293 * 15 5 4 37 37 H 1.09001 * 109.47048 * 186.04329 * 15 5 4 38 38 H 1.08007 * 120.35374 * 359.95247 * 17 16 15 39 39 H 1.08004 * 120.75905 * 180.02562 * 18 17 16 40 40 H 1.07996 * 120.44756 * 180.24501 * 19 18 17 41 41 H 1.09003 * 109.46787 * 300.00242 * 22 21 20 42 42 H 1.09007 * 109.46601 * 59.99649 * 22 21 20 43 43 H 1.08991 * 109.47449 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0597 2.8269 -0.0402 6 6 3.6263 3.5025 -1.2705 7 6 4.2848 2.8518 -2.4596 8 1 5.0115 2.0666 -2.3119 9 6 3.9593 3.2586 -3.7362 10 7 3.0746 4.2149 -3.9160 11 14 4.7750 2.4515 -5.2102 12 1 4.4722 0.9976 -5.2088 13 1 4.2570 3.0644 -6.4596 14 1 6.2444 2.6512 -5.1337 15 6 3.6290 3.5729 1.1498 16 6 4.2923 2.9939 2.3728 17 6 5.4611 3.5571 2.8457 18 6 6.0664 3.0194 3.9728 19 6 5.4684 1.9336 4.5888 20 6 4.2955 1.4155 4.0552 21 8 3.7021 0.3485 4.6469 22 6 2.4948 -0.1339 4.0538 23 7 3.7487 1.9556 2.9787 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6767 1.9564 -0.8901 31 1 3.9337 0.9026 -0.8736 32 1 3.9329 0.9553 0.9056 33 1 2.5435 3.4234 -1.3663 34 1 3.9114 4.5538 -1.2274 35 1 2.8459 4.5015 -4.8141 36 1 2.5466 3.4980 1.2536 37 1 3.9123 4.6201 1.0443 38 1 5.8997 4.4068 2.3434 39 1 6.9808 3.4413 4.3632 40 1 5.9101 1.4926 5.4702 41 1 1.7458 0.6580 4.0589 42 1 2.6920 -0.4408 3.0266 43 1 2.1255 -0.9865 4.6236 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137532164.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:20 Heat of formation + Delta-G solvation = -26.488549 kcal Electronic energy + Delta-G solvation = -22381.491968 eV Core-core repulsion = 19233.132180 eV Total energy + Delta-G solvation = -3148.359788 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.62826 -39.46742 -38.43295 -35.36560 -34.65723 -33.37399 -32.14938 -29.85770 -29.34242 -27.95448 -26.40679 -25.09221 -23.81418 -23.27292 -22.44895 -20.99155 -19.02559 -18.37521 -17.61921 -17.16671 -16.83939 -16.77029 -16.44189 -16.12191 -15.65241 -15.38945 -15.08936 -14.54376 -14.21341 -14.13830 -13.88342 -13.80491 -13.51003 -13.07999 -12.98798 -12.76100 -12.70848 -12.51046 -12.47130 -12.26083 -12.09812 -12.02077 -11.86479 -11.73021 -11.28846 -11.26335 -10.73924 -10.57589 -10.47831 -9.37885 -8.90079 -8.17305 -6.25960 0.20537 0.42929 1.40931 1.43246 1.51106 2.20807 2.41100 2.76855 3.15456 3.20268 3.59031 3.84232 4.04845 4.05539 4.17775 4.25315 4.33518 4.40229 4.43978 4.47372 4.49879 4.56248 4.60351 4.75341 4.80404 4.84284 4.88340 4.92517 4.99570 5.11938 5.16221 5.22439 5.25942 5.32271 5.39242 5.47334 5.54386 5.57265 5.69210 6.08074 6.30222 6.34075 6.62873 6.88848 6.98035 7.42698 8.92935 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016942 B = 0.005304 C = 0.004407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.296134 B = 5277.847405 C = 6352.540248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.111 4.111 3 C -0.137 4.137 4 C 0.079 3.921 5 N -0.534 5.534 6 C 0.207 3.793 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.007 3.993 10 N -0.932 5.932 11 Si 0.961 3.039 12 H -0.271 1.271 13 H -0.283 1.283 14 H -0.269 1.269 15 C 0.099 3.901 16 C 0.167 3.833 17 C -0.197 4.197 18 C -0.033 4.033 19 C -0.196 4.196 20 C 0.295 3.705 21 O -0.318 6.318 22 C 0.040 3.960 23 N -0.545 5.545 24 H 0.056 0.944 25 H 0.040 0.960 26 H 0.070 0.930 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.035 0.965 31 H 0.050 0.950 32 H 0.067 0.933 33 H -0.019 1.019 34 H 0.004 0.996 35 H 0.263 0.737 36 H 0.039 0.961 37 H 0.087 0.913 38 H 0.146 0.854 39 H 0.178 0.822 40 H 0.162 0.838 41 H 0.050 0.950 42 H 0.049 0.951 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.909 -6.365 17.118 18.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.149 4.149 3 C -0.176 4.176 4 C -0.049 4.049 5 N -0.257 5.257 6 C 0.081 3.919 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.191 4.191 10 N -0.572 5.572 11 Si 0.786 3.214 12 H -0.196 1.196 13 H -0.208 1.208 14 H -0.194 1.194 15 C -0.030 4.030 16 C 0.031 3.969 17 C -0.218 4.218 18 C -0.058 4.058 19 C -0.216 4.216 20 C 0.116 3.884 21 O -0.226 6.226 22 C -0.055 4.055 23 N -0.270 5.270 24 H 0.075 0.925 25 H 0.059 0.941 26 H 0.089 0.911 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.086 0.914 33 H -0.002 1.002 34 H 0.022 0.978 35 H 0.072 0.928 36 H 0.057 0.943 37 H 0.106 0.894 38 H 0.164 0.836 39 H 0.195 0.805 40 H 0.180 0.820 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.637 -6.776 16.878 18.199 hybrid contribution -0.270 0.362 -1.106 1.194 sum 0.367 -6.414 15.773 17.031 Atomic orbital electron populations 1.21718 0.94994 1.02114 1.01317 1.21364 0.96539 0.95471 1.01494 1.21977 0.97497 0.97984 1.00133 1.21888 0.92839 0.89985 1.00237 1.62276 1.59359 1.02692 1.01419 1.19426 0.93072 0.93016 0.86394 1.21342 1.23311 1.19857 0.91074 0.92601 1.25781 0.95777 0.95740 1.01815 1.70063 1.34128 1.30222 1.22811 0.85557 0.78969 0.78693 0.78143 1.19617 1.20788 1.19414 1.20989 0.97128 0.97522 0.87350 1.20720 0.92654 0.89932 0.93571 1.22022 0.96678 1.03903 0.99170 1.21778 0.99117 0.92584 0.92369 1.21365 0.95664 1.00088 1.04527 1.20184 0.91082 0.87873 0.89277 1.86196 1.40772 1.42874 1.52712 1.22968 0.83622 0.99727 0.99161 1.67026 1.36213 1.13473 1.10305 0.92483 0.94125 0.91117 0.93124 0.91284 0.92330 0.94664 0.93178 0.91421 1.00159 0.97818 0.92783 0.94258 0.89437 0.83574 0.80461 0.82008 0.93085 0.93253 0.85928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.83 9.91 71.98 0.71 -3.12 16 2 C -0.11 -3.43 5.93 30.60 0.18 -3.25 16 3 C -0.14 -5.22 4.56 30.60 0.14 -5.09 16 4 C 0.08 3.25 4.88 86.30 0.42 3.67 16 5 N -0.53 -23.61 4.69 -905.37 -4.25 -27.86 16 6 C 0.21 10.97 4.51 85.56 0.39 11.35 16 7 C -0.52 -29.47 8.40 25.60 0.21 -29.25 16 8 H 0.06 3.18 7.28 -2.91 -0.02 3.16 16 9 C 0.01 0.40 5.46 84.66 0.46 0.86 16 10 N -0.93 -55.90 13.29 21.45 0.28 -55.61 16 11 Si 0.96 44.67 29.54 68.60 2.03 46.70 16 12 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 13 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 14 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 15 C 0.10 3.67 5.06 85.56 0.43 4.11 16 16 C 0.17 5.43 5.70 42.51 0.24 5.67 16 17 C -0.20 -5.25 9.71 22.37 0.22 -5.04 16 18 C -0.03 -0.69 10.17 22.44 0.23 -0.46 16 19 C -0.20 -4.39 10.04 22.47 0.23 -4.16 16 20 C 0.29 8.28 7.49 84.78 0.63 8.91 16 21 O -0.32 -8.20 10.48 -89.86 -0.94 -9.14 16 22 C 0.04 0.86 10.38 113.37 1.18 2.04 16 23 N -0.55 -17.34 7.65 -296.98 -2.27 -19.61 16 24 H 0.06 1.41 8.14 -2.38 -0.02 1.40 16 25 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 26 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 28 H 0.07 1.91 7.70 -2.39 -0.02 1.89 16 29 H 0.06 2.18 6.41 -2.39 -0.02 2.17 16 30 H 0.03 1.59 6.24 -2.38 -0.01 1.58 16 31 H 0.05 2.29 6.89 -2.39 -0.02 2.28 16 32 H 0.07 2.65 6.23 -2.39 -0.01 2.64 16 33 H -0.02 -1.10 6.03 -2.39 -0.01 -1.11 16 34 H 0.00 0.21 7.93 -2.38 -0.02 0.19 16 35 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 36 H 0.04 1.51 6.10 -2.39 -0.01 1.50 16 37 H 0.09 3.12 7.83 -2.39 -0.02 3.10 16 38 H 0.15 3.55 8.06 -2.91 -0.02 3.52 16 39 H 0.18 2.20 8.06 -2.91 -0.02 2.17 16 40 H 0.16 2.69 8.06 -2.91 -0.02 2.66 16 41 H 0.05 1.15 8.10 -2.39 -0.02 1.13 16 42 H 0.05 1.17 7.66 -2.38 -0.02 1.15 16 43 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -66.12 346.75 1.50 -64.62 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 0.98 Total: 14.65 kcal Atomic # 6 Polarization: -19.41 SS G_CDS: 5.68 Total: -13.74 kcal Atomic # 7 Polarization: -96.85 SS G_CDS: -6.24 Total: -103.09 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: -0.94 Total: -9.14 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -66.12 1.50 -64.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137532164.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.133 kcal (2) G-P(sol) polarization free energy of solvation -66.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds