Wall clock time and date at job start Tue Mar 31 2020 00:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47068 * 2 1 4 4 C 1.53000 * 109.47234 * 184.65033 * 3 2 1 5 5 N 1.46892 * 109.47022 * 183.42464 * 4 3 2 6 6 C 1.46904 * 111.00182 * 199.10131 * 5 4 3 7 7 C 1.50697 * 109.46879 * 66.04460 * 6 5 4 8 8 H 1.07996 * 120.00546 * 0.02562 * 7 6 5 9 9 C 1.37884 * 120.00038 * 180.02562 * 7 6 5 10 10 N 1.31519 * 119.99496 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00303 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.46772 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47061 * 119.99589 * 11 9 7 14 14 H 1.48492 * 109.47329 * 239.99881 * 11 9 7 15 15 C 1.46900 * 111.00112 * 75.14885 * 5 4 3 16 16 C 1.50706 * 109.47171 * 199.89799 * 15 5 4 17 17 C 1.37991 * 120.45300 * 253.39326 * 16 15 5 18 18 N 1.31949 * 120.81636 * 180.23579 * 17 16 15 19 19 C 1.31977 * 121.86793 * 359.47144 * 18 17 16 20 20 C 1.37956 * 120.81897 * 0.52612 * 19 18 17 21 21 C 1.39247 * 120.45282 * 73.37146 * 16 15 5 22 22 O 1.35737 * 120.84651 * 0.03870 * 21 16 15 23 23 C 1.42905 * 117.00014 * 185.16716 * 22 21 16 24 24 H 1.08998 * 109.47610 * 304.81617 * 1 2 3 25 25 H 1.08999 * 109.47228 * 64.81482 * 1 2 3 26 26 H 1.09004 * 109.46949 * 184.81552 * 1 2 3 27 27 H 1.08994 * 109.47585 * 239.99828 * 2 1 3 28 28 H 1.09002 * 109.47380 * 119.99989 * 2 1 3 29 29 H 1.09004 * 109.46811 * 64.64913 * 3 2 1 30 30 H 1.09001 * 109.46762 * 304.65009 * 3 2 1 31 31 H 1.09002 * 109.46561 * 63.42234 * 4 3 2 32 32 H 1.09005 * 109.47114 * 303.42513 * 4 3 2 33 33 H 1.08995 * 109.47226 * 186.04616 * 6 5 4 34 34 H 1.09000 * 109.46865 * 306.04673 * 6 5 4 35 35 H 0.97002 * 119.99437 * 180.02562 * 10 9 7 36 36 H 1.08998 * 109.47300 * 79.89888 * 15 5 4 37 37 H 1.09002 * 109.46879 * 319.89862 * 15 5 4 38 38 H 1.07999 * 119.58924 * 359.95558 * 17 16 15 39 39 H 1.07994 * 119.59310 * 180.29559 * 19 18 17 40 40 H 1.08003 * 120.44910 * 179.76617 * 20 19 18 41 41 H 1.08995 * 109.46825 * 301.83574 * 23 22 21 42 42 H 1.08994 * 109.46778 * 61.83341 * 23 22 21 43 43 H 1.08999 * 109.46827 * 181.83462 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5655 1.4442 -0.1169 5 7 4.0614 2.8244 -0.0346 6 6 5.4207 2.9290 -0.5816 7 6 5.3897 2.6469 -2.0616 8 1 4.4537 2.4137 -2.5474 9 6 6.5562 2.6865 -2.7956 10 7 7.6959 2.9710 -2.2041 11 14 6.5179 2.3362 -4.6301 12 1 5.1232 2.0459 -5.0494 13 1 7.0205 3.5210 -5.3709 14 1 7.3791 1.1639 -4.9283 15 6 4.0104 3.3206 1.3472 16 6 4.0459 4.8272 1.3416 17 6 5.1855 5.5014 1.7302 18 7 5.2229 6.8203 1.7325 19 6 4.1873 7.5474 1.3576 20 6 3.0115 6.9483 0.9554 21 6 2.9293 5.5580 0.9438 22 8 1.7898 4.9313 0.5550 23 6 0.7342 5.7553 0.0558 24 1 -0.3634 0.5867 0.8437 25 1 -0.3633 0.4373 -0.9300 26 1 -0.3633 -1.0241 0.0863 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.7462 1.9318 0.9288 30 1 1.6101 1.9798 -0.8454 31 1 3.8569 1.0098 -1.0732 32 1 3.9927 0.8555 0.6949 33 1 5.8045 3.9349 -0.4114 34 1 6.0680 2.2047 -0.0872 35 1 8.5165 2.9992 -2.7206 36 1 4.8674 2.9390 1.9021 37 1 3.0898 2.9805 1.8215 38 1 6.0559 4.9425 2.0406 39 1 4.2599 8.6249 1.3692 40 1 2.1664 7.5492 0.6533 41 1 0.4528 6.4848 0.8151 42 1 1.0723 6.2755 -0.8403 43 1 -0.1274 5.1338 -0.1880 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139608827.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:35 Heat of formation + Delta-G solvation = -12.244104 kcal Electronic energy + Delta-G solvation = -22378.680581 eV Core-core repulsion = 19230.938479 eV Total energy + Delta-G solvation = -3147.742102 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.34648 -37.86524 -37.10863 -34.34741 -32.70230 -31.51871 -30.87941 -28.55657 -27.49774 -27.04459 -24.81712 -22.92190 -22.53946 -21.88406 -20.64783 -19.73702 -18.00503 -16.76698 -16.33874 -15.63586 -15.42180 -14.84391 -14.69711 -14.55734 -14.29628 -13.95993 -13.80875 -13.56317 -13.14447 -12.89550 -12.41115 -12.25663 -11.98768 -11.84558 -11.75400 -11.35649 -11.30072 -11.02091 -10.77657 -10.71929 -10.66723 -10.61837 -10.23475 -9.93427 -9.72779 -9.17537 -9.09932 -8.80185 -8.39852 -8.29999 -7.15401 -5.98699 -3.99037 1.44096 1.73157 3.32234 3.39705 3.42157 3.44277 4.13498 4.46246 4.76116 4.92211 4.95592 5.09567 5.17372 5.27316 5.27559 5.36700 5.37370 5.45072 5.51332 5.57322 5.68516 5.73792 5.84446 6.00431 6.05550 6.12633 6.14216 6.19068 6.23198 6.30095 6.42810 6.46627 6.54067 6.83890 6.91552 6.94228 7.36312 7.40343 7.52341 7.86033 8.15975 8.28535 8.37055 8.61005 9.09034 9.64581 11.12234 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.009965 B = 0.007471 C = 0.005052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2809.222704 B = 3747.110402 C = 5541.140188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C -0.109 4.109 4 C 0.063 3.937 5 N -0.526 5.526 6 C 0.193 3.807 7 C -0.503 4.503 8 H 0.063 0.937 9 C 0.055 3.945 10 N -0.897 5.897 11 Si 0.894 3.106 12 H -0.273 1.273 13 H -0.285 1.285 14 H -0.285 1.285 15 C 0.104 3.896 16 C -0.141 4.141 17 C 0.140 3.860 18 N -0.511 5.511 19 C 0.124 3.876 20 C -0.270 4.270 21 C 0.189 3.811 22 O -0.290 6.290 23 C 0.027 3.973 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.047 0.953 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.016 0.984 33 H 0.031 0.969 34 H -0.011 1.011 35 H 0.260 0.740 36 H 0.035 0.965 37 H 0.073 0.927 38 H 0.157 0.843 39 H 0.150 0.850 40 H 0.132 0.868 41 H 0.050 0.950 42 H 0.056 0.944 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.702 2.829 7.548 15.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.163 4.163 3 C -0.147 4.147 4 C -0.065 4.065 5 N -0.250 5.250 6 C 0.068 3.932 7 C -0.542 4.542 8 H 0.081 0.919 9 C -0.146 4.146 10 N -0.537 5.537 11 Si 0.722 3.278 12 H -0.197 1.197 13 H -0.211 1.211 14 H -0.211 1.211 15 C -0.025 4.025 16 C -0.145 4.145 17 C -0.016 4.016 18 N -0.223 5.223 19 C -0.034 4.034 20 C -0.292 4.292 21 C 0.135 3.865 22 O -0.200 6.200 23 C -0.068 4.068 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.103 0.897 32 H 0.034 0.966 33 H 0.049 0.951 34 H 0.007 0.993 35 H 0.069 0.931 36 H 0.053 0.947 37 H 0.091 0.909 38 H 0.174 0.826 39 H 0.168 0.832 40 H 0.150 0.850 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -13.136 3.326 7.471 15.474 hybrid contribution -0.191 -0.707 -1.010 1.247 sum -13.327 2.619 6.461 15.041 Atomic orbital electron populations 1.21743 0.96477 1.00769 1.01540 1.21521 0.95211 0.97974 1.01625 1.21572 0.96273 0.94882 1.01926 1.22000 0.93524 0.89604 1.01340 1.62048 1.27714 1.20028 1.15254 1.19750 0.82105 0.96586 0.94803 1.21186 0.93578 1.46495 0.92927 0.91914 1.24979 0.95494 0.95652 0.98493 1.69971 0.98410 1.49508 1.35810 0.86505 0.78018 0.77776 0.85518 1.19714 1.21109 1.21122 1.20743 1.00298 0.89160 0.92271 1.20307 0.92359 0.97636 1.04161 1.22549 0.95780 0.89761 0.93491 1.67680 1.29803 1.07431 1.17377 1.22397 0.87945 0.99844 0.93187 1.22113 1.01795 0.94007 1.11241 1.19052 0.86463 0.90312 0.90687 1.86174 1.21816 1.35270 1.76726 1.23044 0.89349 0.96040 0.98380 0.93093 0.92930 0.93424 0.92096 0.92683 0.92700 0.91675 0.89717 0.96569 0.95128 0.99310 0.93057 0.94694 0.90915 0.82569 0.83234 0.85001 0.93170 0.92558 0.88388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.91 37.15 0.37 -1.30 16 2 C -0.13 -1.67 5.93 -26.73 -0.16 -1.83 16 3 C -0.11 -1.72 5.35 -26.73 -0.14 -1.86 16 4 C 0.06 1.23 4.79 -3.83 -0.02 1.21 16 5 N -0.53 -11.30 4.35 -237.52 -1.03 -12.33 16 6 C 0.19 5.02 4.54 -4.97 -0.02 5.00 16 7 C -0.50 -14.23 8.24 -34.44 -0.28 -14.51 16 8 H 0.06 1.77 7.30 -52.49 -0.38 1.39 16 9 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 10 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 11 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 15 C 0.10 1.92 4.62 -4.97 -0.02 1.90 16 16 C -0.14 -2.58 4.82 -104.33 -0.50 -3.08 16 17 C 0.14 2.54 10.27 -17.59 -0.18 2.36 16 18 N -0.51 -9.09 10.36 -13.33 -0.14 -9.22 16 19 C 0.12 1.86 11.17 -17.59 -0.20 1.67 16 20 C -0.27 -3.93 9.14 -39.30 -0.36 -4.29 16 21 C 0.19 3.17 6.70 -38.82 -0.26 2.91 16 22 O -0.29 -4.53 9.98 -18.92 -0.19 -4.71 16 23 C 0.03 0.30 9.87 101.05 1.00 1.29 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.85 6.65 -51.93 -0.35 0.51 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.08 1.82 6.58 -51.93 -0.34 1.48 16 32 H 0.02 0.30 8.01 -51.93 -0.42 -0.11 16 33 H 0.03 0.87 6.99 -51.93 -0.36 0.50 16 34 H -0.01 -0.30 8.12 -51.93 -0.42 -0.72 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.03 0.64 7.81 -51.93 -0.41 0.23 16 37 H 0.07 1.23 6.37 -51.93 -0.33 0.90 16 38 H 0.16 2.68 7.99 -52.49 -0.42 2.26 16 39 H 0.15 1.73 8.06 -52.49 -0.42 1.31 16 40 H 0.13 1.49 6.46 -52.48 -0.34 1.15 16 41 H 0.05 0.44 7.38 -51.93 -0.38 0.06 16 42 H 0.06 0.61 8.02 -51.93 -0.42 0.19 16 43 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 350.69 15.07 5.28 5.28 Total: -1.00 -31.92 350.69 -8.32 -40.24 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -7.08 Total: -0.88 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: -0.88 Total: -9.06 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: -0.43 Total: -47.81 kcal Atomic # 8 Polarization: -4.53 SS G_CDS: -0.19 Total: -4.71 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.92 -8.32 -40.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139608827.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.997 kcal (2) G-P(sol) polarization free energy of solvation -31.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds