Wall clock time and date at job start Tue Mar 31 2020 00:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47516 * 2 1 4 4 C 1.52996 * 109.47103 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47204 * 180.02562 * 4 3 2 6 6 C 1.36938 * 119.99876 * 271.77666 * 5 4 3 7 7 H 1.08006 * 120.00086 * 316.96864 * 6 5 4 8 8 C 1.38814 * 120.00047 * 136.96643 * 6 5 4 9 9 N 1.31618 * 120.00057 * 352.88792 * 8 6 5 10 10 Si 1.86801 * 119.99836 * 172.89311 * 8 6 5 11 11 H 1.48502 * 109.47234 * 90.00056 * 10 8 6 12 12 H 1.48508 * 109.46665 * 209.99705 * 10 8 6 13 13 H 1.48503 * 109.47069 * 329.99496 * 10 8 6 14 14 C 1.46502 * 120.00151 * 91.77667 * 5 4 3 15 15 C 1.50696 * 109.47096 * 90.00230 * 14 5 4 16 16 C 1.37990 * 120.45549 * 260.00033 * 15 14 5 17 17 N 1.31951 * 120.82315 * 180.25749 * 16 15 14 18 18 C 1.31972 * 121.86204 * 359.42484 * 17 16 15 19 19 C 1.37949 * 120.82337 * 0.57558 * 18 17 16 20 20 C 1.39244 * 120.45707 * 79.97687 * 15 14 5 21 21 O 1.35742 * 120.84452 * 359.97438 * 20 15 14 22 22 C 1.42905 * 116.99798 * 179.97438 * 21 20 15 23 23 C 1.52998 * 109.46811 * 180.02562 * 22 21 20 24 24 H 1.08997 * 109.47312 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46973 * 300.00117 * 1 2 3 26 26 H 1.08996 * 109.47013 * 59.99761 * 1 2 3 27 27 H 1.08999 * 109.46973 * 239.99883 * 2 1 3 28 28 H 1.09006 * 109.47105 * 120.00360 * 2 1 3 29 29 H 1.08999 * 109.47096 * 59.99958 * 3 2 1 30 30 H 1.08999 * 109.46814 * 299.99760 * 3 2 1 31 31 H 1.08999 * 109.47350 * 59.99904 * 4 3 2 32 32 H 1.09008 * 109.47009 * 299.99609 * 4 3 2 33 33 H 0.97001 * 120.00277 * 180.02562 * 9 8 6 34 34 H 1.08992 * 109.47159 * 329.99950 * 14 5 4 35 35 H 1.08999 * 109.46773 * 210.00016 * 14 5 4 36 36 H 1.08002 * 119.58938 * 359.97366 * 16 15 14 37 37 H 1.07997 * 119.58775 * 180.31278 * 18 17 16 38 38 H 1.08008 * 120.45223 * 179.74604 * 19 18 17 39 39 H 1.09002 * 109.47382 * 300.00053 * 22 21 20 40 40 H 1.08997 * 109.47121 * 60.00769 * 22 21 20 41 41 H 1.09001 * 109.47342 * 60.00264 * 23 22 21 42 42 H 1.09004 * 109.47162 * 180.02562 * 23 22 21 43 43 H 1.09006 * 109.47445 * 300.00120 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 7 4.0585 2.8235 0.0000 6 6 4.2516 3.4819 -1.1851 7 1 4.7217 2.9744 -2.0145 8 6 3.8432 4.8017 -1.3204 9 7 3.1468 5.3765 -0.3628 10 14 4.2819 5.7618 -2.8615 11 1 3.2110 5.5868 -3.8754 12 1 4.4153 7.2023 -2.5260 13 1 5.5681 5.2597 -3.4082 14 6 4.3404 3.5002 1.2684 15 6 5.7759 3.2589 1.6583 16 6 6.0939 2.2969 2.5951 17 7 7.3479 2.0830 2.9457 18 6 8.3456 2.7638 2.4142 19 6 8.1102 3.7426 1.4710 20 6 6.7996 4.0031 1.0780 21 8 6.5274 4.9576 0.1520 22 6 7.6402 5.6722 -0.3895 23 6 7.1402 6.6986 -1.4081 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6768 1.9562 -0.8900 31 1 3.9330 0.9286 -0.8908 32 1 3.9338 0.9283 0.8892 33 1 2.8611 6.2987 -0.4575 34 1 3.6824 3.1078 2.0436 35 1 4.1699 4.5708 1.1547 36 1 5.3062 1.7149 3.0505 37 1 9.3588 2.5550 2.7245 38 1 8.9310 4.2990 1.0429 39 1 8.1681 6.1858 0.4140 40 1 8.3170 4.9729 -0.8802 41 1 6.4635 7.3979 -0.9171 42 1 7.9890 7.2434 -1.8216 43 1 6.6120 6.1854 -2.2118 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139628835.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:19 Heat of formation + Delta-G solvation = 4.591845 kcal Electronic energy + Delta-G solvation = -22857.248129 eV Core-core repulsion = 19710.236088 eV Total energy + Delta-G solvation = -3147.012041 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -39.95460 -37.58268 -36.22677 -34.03271 -32.09838 -31.29422 -30.66774 -30.01960 -27.75368 -25.66043 -24.05564 -23.54662 -22.03156 -21.43128 -20.64011 -19.79392 -17.83250 -16.66727 -16.13493 -15.65159 -14.85340 -14.75766 -14.52541 -14.36689 -13.82071 -13.67670 -13.34466 -13.15830 -13.04802 -12.55745 -12.35353 -12.19230 -12.05892 -11.79533 -11.64531 -11.22224 -11.00380 -10.74132 -10.55504 -10.47774 -10.34424 -10.24153 -10.11124 -9.99313 -9.81671 -9.59227 -8.89720 -8.53251 -8.42719 -7.87179 -6.43472 -5.68794 -3.36497 1.73848 2.08001 3.30708 3.37819 3.39579 3.77497 4.41283 4.53322 5.00128 5.19908 5.26521 5.38075 5.41029 5.46295 5.50669 5.51551 5.55863 5.71024 5.79043 5.83077 5.90264 6.08913 6.11841 6.15235 6.25613 6.33833 6.40561 6.44732 6.46374 6.50010 6.52330 6.64288 6.71646 6.79123 7.06185 7.14986 7.28526 7.34880 7.76735 7.91994 8.04639 8.61212 8.65215 9.27338 9.86470 10.45906 11.29924 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.012410 B = 0.008467 C = 0.005384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.689684 B = 3306.340465 C = 5199.711503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.131 4.131 4 C 0.150 3.850 5 N -0.574 5.574 6 C -0.242 4.242 7 H 0.050 0.950 8 C 0.036 3.964 9 N -0.887 5.887 10 Si 0.892 3.108 11 H -0.295 1.295 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.181 3.819 15 C -0.154 4.154 16 C 0.112 3.888 17 N -0.519 5.519 18 C 0.107 3.893 19 C -0.276 4.276 20 C 0.187 3.813 21 O -0.260 6.260 22 C 0.055 3.945 23 C -0.163 4.163 24 H 0.043 0.957 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.037 0.963 32 H 0.031 0.969 33 H 0.253 0.747 34 H 0.032 0.968 35 H 0.120 0.880 36 H 0.149 0.851 37 H 0.143 0.857 38 H 0.125 0.875 39 H 0.052 0.948 40 H 0.055 0.945 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.119 -2.189 2.090 5.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.171 4.171 4 C 0.024 3.976 5 N -0.293 5.293 6 C -0.372 4.372 7 H 0.068 0.932 8 C -0.164 4.164 9 N -0.530 5.530 10 Si 0.724 3.276 11 H -0.223 1.223 12 H -0.214 1.214 13 H -0.203 1.203 14 C 0.055 3.945 15 C -0.160 4.160 16 C -0.043 4.043 17 N -0.232 5.232 18 C -0.051 4.051 19 C -0.297 4.297 20 C 0.132 3.868 21 O -0.169 6.169 22 C -0.021 4.021 23 C -0.219 4.219 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.056 0.944 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.050 0.950 35 H 0.137 0.863 36 H 0.166 0.834 37 H 0.160 0.840 38 H 0.143 0.857 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.994 -2.536 2.585 6.169 hybrid contribution 0.443 1.253 -1.526 2.024 sum 5.438 -1.284 1.059 5.686 Atomic orbital electron populations 1.21756 0.96856 1.00326 1.01643 1.21535 0.95032 0.98747 1.00831 1.22127 0.99040 0.93785 1.02149 1.20916 0.91448 0.87309 0.97951 1.43682 1.73474 1.10074 1.02031 1.18834 1.32551 0.95196 0.90651 0.93199 1.25143 0.96305 0.98541 0.96440 1.69687 1.38279 1.12766 1.32273 0.86690 0.77484 0.79610 0.83815 1.22315 1.21373 1.20307 1.20007 0.84659 1.03346 0.86506 1.21755 1.00698 0.96381 0.97187 1.22415 0.92977 0.94636 0.94322 1.67565 1.00369 1.27547 1.27746 1.22177 0.97851 0.92050 0.93055 1.22104 0.96288 1.05491 1.05821 1.19197 0.92257 0.87773 0.87602 1.86523 1.32426 1.46170 1.51743 1.22659 0.89056 0.94137 0.96221 1.22002 1.01996 0.98546 0.99375 0.93789 0.93096 0.93003 0.92817 0.92964 0.92951 0.91916 0.94428 0.95050 0.93650 0.95005 0.86303 0.83407 0.83972 0.85684 0.92959 0.92705 0.91407 0.91098 0.90988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.91 37.16 0.37 -1.70 16 2 C -0.12 -1.92 5.93 -26.73 -0.16 -2.08 16 3 C -0.13 -2.55 5.54 -26.74 -0.15 -2.69 16 4 C 0.15 3.14 5.67 -4.04 -0.02 3.11 16 5 N -0.57 -13.81 2.40 -174.61 -0.42 -14.23 16 6 C -0.24 -6.36 8.61 -15.06 -0.13 -6.49 16 7 H 0.05 1.36 7.84 -52.48 -0.41 0.95 16 8 C 0.04 0.94 4.59 -17.43 -0.08 0.86 16 9 N -0.89 -24.23 11.03 55.49 0.61 -23.62 16 10 Si 0.89 21.05 26.10 -169.99 -4.44 16.62 16 11 H -0.30 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.28 -6.31 6.33 56.52 0.36 -5.95 16 14 C 0.18 4.19 5.12 -5.19 -0.03 4.17 16 15 C -0.15 -3.25 5.49 -104.34 -0.57 -3.82 16 16 C 0.11 2.12 10.82 -17.59 -0.19 1.93 16 17 N -0.52 -9.64 10.36 -13.33 -0.14 -9.78 16 18 C 0.11 1.78 11.17 -17.60 -0.20 1.58 16 19 C -0.28 -4.75 9.11 -39.30 -0.36 -5.11 16 20 C 0.19 3.83 6.70 -38.82 -0.26 3.57 16 21 O -0.26 -5.52 7.94 -18.93 -0.15 -5.67 16 22 C 0.06 0.92 5.49 37.16 0.20 1.12 16 23 C -0.16 -2.68 9.52 37.16 0.35 -2.33 16 24 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.04 0.79 8.05 -51.93 -0.42 0.38 16 32 H 0.03 0.61 8.06 -51.92 -0.42 0.19 16 33 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 34 H 0.03 0.70 7.95 -51.93 -0.41 0.28 16 35 H 0.12 3.13 5.14 -51.93 -0.27 2.87 16 36 H 0.15 2.51 8.04 -52.49 -0.42 2.09 16 37 H 0.14 1.87 8.06 -52.49 -0.42 1.45 16 38 H 0.13 1.80 6.47 -52.48 -0.34 1.46 16 39 H 0.05 0.75 7.71 -51.93 -0.40 0.35 16 40 H 0.05 0.84 7.71 -51.93 -0.40 0.44 16 41 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.07 1.37 3.82 -51.93 -0.20 1.18 16 LS Contribution 342.48 15.07 5.16 5.16 Total: -1.00 -28.35 342.48 -7.68 -36.04 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -7.10 Total: 3.36 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: -1.22 Total: -7.88 kcal Atomic # 7 Polarization: -47.68 SS G_CDS: 0.06 Total: -47.62 kcal Atomic # 8 Polarization: -5.52 SS G_CDS: -0.15 Total: -5.67 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.44 Total: 16.62 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.35 -7.68 -36.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139628835.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.628 kcal (2) G-P(sol) polarization free energy of solvation -28.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds