Wall clock time and date at job start Tue Mar 31 2020 00:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47516 * 2 1 4 4 C 1.52996 * 109.47103 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47204 * 180.02562 * 4 3 2 6 6 C 1.36938 * 119.99876 * 271.77666 * 5 4 3 7 7 H 1.08006 * 120.00086 * 316.96864 * 6 5 4 8 8 C 1.38814 * 120.00047 * 136.96643 * 6 5 4 9 9 N 1.31618 * 120.00057 * 352.88792 * 8 6 5 10 10 Si 1.86801 * 119.99836 * 172.89311 * 8 6 5 11 11 H 1.48502 * 109.47234 * 90.00056 * 10 8 6 12 12 H 1.48508 * 109.46665 * 209.99705 * 10 8 6 13 13 H 1.48503 * 109.47069 * 329.99496 * 10 8 6 14 14 C 1.46502 * 120.00151 * 91.77667 * 5 4 3 15 15 C 1.50696 * 109.47096 * 90.00230 * 14 5 4 16 16 C 1.37990 * 120.45549 * 260.00033 * 15 14 5 17 17 N 1.31951 * 120.82315 * 180.25749 * 16 15 14 18 18 C 1.31972 * 121.86204 * 359.42484 * 17 16 15 19 19 C 1.37949 * 120.82337 * 0.57558 * 18 17 16 20 20 C 1.39244 * 120.45707 * 79.97687 * 15 14 5 21 21 O 1.35742 * 120.84452 * 359.97438 * 20 15 14 22 22 C 1.42905 * 116.99798 * 179.97438 * 21 20 15 23 23 C 1.52998 * 109.46811 * 180.02562 * 22 21 20 24 24 H 1.08997 * 109.47312 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46973 * 300.00117 * 1 2 3 26 26 H 1.08996 * 109.47013 * 59.99761 * 1 2 3 27 27 H 1.08999 * 109.46973 * 239.99883 * 2 1 3 28 28 H 1.09006 * 109.47105 * 120.00360 * 2 1 3 29 29 H 1.08999 * 109.47096 * 59.99958 * 3 2 1 30 30 H 1.08999 * 109.46814 * 299.99760 * 3 2 1 31 31 H 1.08999 * 109.47350 * 59.99904 * 4 3 2 32 32 H 1.09008 * 109.47009 * 299.99609 * 4 3 2 33 33 H 0.97001 * 120.00277 * 180.02562 * 9 8 6 34 34 H 1.08992 * 109.47159 * 329.99950 * 14 5 4 35 35 H 1.08999 * 109.46773 * 210.00016 * 14 5 4 36 36 H 1.08002 * 119.58938 * 359.97366 * 16 15 14 37 37 H 1.07997 * 119.58775 * 180.31278 * 18 17 16 38 38 H 1.08008 * 120.45223 * 179.74604 * 19 18 17 39 39 H 1.09002 * 109.47382 * 300.00053 * 22 21 20 40 40 H 1.08997 * 109.47121 * 60.00769 * 22 21 20 41 41 H 1.09001 * 109.47342 * 60.00264 * 23 22 21 42 42 H 1.09004 * 109.47162 * 180.02562 * 23 22 21 43 43 H 1.09006 * 109.47445 * 300.00120 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 7 4.0585 2.8235 0.0000 6 6 4.2516 3.4819 -1.1851 7 1 4.7217 2.9744 -2.0145 8 6 3.8432 4.8017 -1.3204 9 7 3.1468 5.3765 -0.3628 10 14 4.2819 5.7618 -2.8615 11 1 3.2110 5.5868 -3.8754 12 1 4.4153 7.2023 -2.5260 13 1 5.5681 5.2597 -3.4082 14 6 4.3404 3.5002 1.2684 15 6 5.7759 3.2589 1.6583 16 6 6.0939 2.2969 2.5951 17 7 7.3479 2.0830 2.9457 18 6 8.3456 2.7638 2.4142 19 6 8.1102 3.7426 1.4710 20 6 6.7996 4.0031 1.0780 21 8 6.5274 4.9576 0.1520 22 6 7.6402 5.6722 -0.3895 23 6 7.1402 6.6986 -1.4081 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6768 1.9562 -0.8900 31 1 3.9330 0.9286 -0.8908 32 1 3.9338 0.9283 0.8892 33 1 2.8611 6.2987 -0.4575 34 1 3.6824 3.1078 2.0436 35 1 4.1699 4.5708 1.1547 36 1 5.3062 1.7149 3.0505 37 1 9.3588 2.5550 2.7245 38 1 8.9310 4.2990 1.0429 39 1 8.1681 6.1858 0.4140 40 1 8.3170 4.9729 -0.8802 41 1 6.4635 7.3979 -0.9171 42 1 7.9890 7.2434 -1.8216 43 1 6.6120 6.1854 -2.2118 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139628835.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:19 Heat of formation + Delta-G solvation = -10.913806 kcal Electronic energy + Delta-G solvation = -22857.920504 eV Core-core repulsion = 19710.236088 eV Total energy + Delta-G solvation = -3147.684416 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.40106 -39.02193 -37.94455 -35.54146 -33.71322 -32.89484 -32.19339 -31.43211 -29.32413 -27.44147 -25.60080 -25.03044 -23.51132 -22.83413 -22.13647 -21.46677 -19.27527 -18.53090 -17.64205 -17.07176 -16.63493 -16.29424 -15.93714 -15.84477 -15.42145 -15.35706 -14.75014 -14.58820 -14.55361 -14.01325 -13.81746 -13.60273 -13.51480 -13.21934 -13.09564 -12.98481 -12.71797 -12.30023 -12.18921 -12.06089 -11.83890 -11.76682 -11.74028 -11.60004 -11.43611 -11.22865 -10.46057 -10.33735 -9.92066 -9.39437 -8.36869 -7.66969 -5.39440 0.32766 0.61531 1.39118 1.44307 1.49157 2.40999 2.55119 3.01285 3.45635 3.69364 3.86237 3.89395 4.00432 4.05511 4.18391 4.20345 4.30899 4.34681 4.43126 4.48408 4.52865 4.60677 4.72245 4.80880 4.83771 4.90974 5.00690 5.09029 5.09376 5.10408 5.12071 5.14158 5.21527 5.42255 5.47504 5.56725 5.67735 5.73604 5.84658 5.98106 6.60214 6.67692 7.19693 7.31859 7.95524 8.50254 9.27270 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.012410 B = 0.008467 C = 0.005384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.689684 B = 3306.340465 C = 5199.711503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C -0.118 4.118 4 C 0.149 3.851 5 N -0.588 5.588 6 C -0.245 4.245 7 H 0.034 0.966 8 C 0.006 3.994 9 N -0.910 5.910 10 Si 0.933 3.067 11 H -0.305 1.305 12 H -0.283 1.283 13 H -0.266 1.266 14 C 0.192 3.808 15 C -0.183 4.183 16 C 0.116 3.884 17 N -0.530 5.530 18 C 0.114 3.886 19 C -0.269 4.269 20 C 0.168 3.832 21 O -0.294 6.294 22 C 0.047 3.953 23 C -0.161 4.161 24 H 0.069 0.931 25 H 0.049 0.951 26 H 0.043 0.957 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.037 0.963 30 H 0.029 0.971 31 H 0.032 0.968 32 H 0.048 0.952 33 H 0.247 0.753 34 H 0.032 0.968 35 H 0.086 0.914 36 H 0.162 0.838 37 H 0.185 0.815 38 H 0.157 0.843 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.051 0.949 42 H 0.112 0.888 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.174 -3.126 2.619 8.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C -0.158 4.158 4 C 0.023 3.977 5 N -0.308 5.308 6 C -0.375 4.375 7 H 0.052 0.948 8 C -0.192 4.192 9 N -0.554 5.554 10 Si 0.764 3.236 11 H -0.234 1.234 12 H -0.209 1.209 13 H -0.191 1.191 14 C 0.065 3.935 15 C -0.188 4.188 16 C -0.039 4.039 17 N -0.243 5.243 18 C -0.043 4.043 19 C -0.290 4.290 20 C 0.113 3.887 21 O -0.205 6.205 22 C -0.028 4.028 23 C -0.218 4.218 24 H 0.088 0.912 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.056 0.944 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.050 0.950 35 H 0.104 0.896 36 H 0.179 0.821 37 H 0.202 0.798 38 H 0.175 0.825 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.070 0.930 42 H 0.130 0.870 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.073 -3.487 3.121 8.481 hybrid contribution -0.091 1.527 -1.645 2.246 sum 6.982 -1.960 1.476 7.401 Atomic orbital electron populations 1.21732 0.95479 1.01892 1.01251 1.21467 0.96223 0.95769 1.01920 1.21940 0.97992 0.96172 0.99726 1.20992 0.92278 0.86000 0.98386 1.43840 1.74265 1.10927 1.01723 1.18784 1.32141 0.95486 0.91113 0.94848 1.25512 0.96454 0.99063 0.98174 1.69842 1.39551 1.12474 1.33552 0.86053 0.77303 0.78940 0.81332 1.23401 1.20928 1.19128 1.19664 0.86513 1.01191 0.86084 1.21600 0.99544 0.98429 0.99272 1.22559 0.93878 0.93959 0.93532 1.67671 1.00331 1.28140 1.28165 1.22899 0.99177 0.90588 0.91664 1.22403 0.95662 1.05524 1.05425 1.19493 0.93551 0.87935 0.87771 1.86478 1.35004 1.46761 1.52216 1.22947 0.88425 0.94352 0.97092 1.22033 1.03073 0.98284 0.98385 0.91193 0.93178 0.93805 0.92188 0.91321 0.94418 0.95192 0.94947 0.93396 0.94316 0.94973 0.89629 0.82106 0.79804 0.82539 0.90253 0.91243 0.92973 0.86981 0.93816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.87 9.91 71.98 0.71 -3.16 16 2 C -0.12 -3.46 5.93 30.59 0.18 -3.28 16 3 C -0.12 -4.68 5.54 30.59 0.17 -4.51 16 4 C 0.15 6.31 5.67 86.38 0.49 6.80 16 5 N -0.59 -29.09 2.40 -706.34 -1.69 -30.78 16 6 C -0.24 -13.26 8.61 84.03 0.72 -12.54 16 7 H 0.03 1.90 7.84 -2.91 -0.02 1.88 16 8 C 0.01 0.32 4.59 84.86 0.39 0.71 16 9 N -0.91 -51.71 11.03 21.65 0.24 -51.47 16 10 Si 0.93 44.24 26.10 68.60 1.79 46.03 16 11 H -0.31 -14.83 7.11 99.48 0.71 -14.12 16 12 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 13 H -0.27 -11.97 6.33 99.48 0.63 -11.34 16 14 C 0.19 9.14 5.12 85.63 0.44 9.58 16 15 C -0.18 -7.69 5.49 -19.68 -0.11 -7.80 16 16 C 0.12 4.27 10.82 84.62 0.92 5.18 16 17 N -0.53 -18.31 10.36 -196.09 -2.03 -20.34 16 18 C 0.11 3.39 11.17 84.60 0.95 4.33 16 19 C -0.27 -8.47 9.11 22.45 0.20 -8.27 16 20 C 0.17 6.71 6.70 22.76 0.15 6.87 16 21 O -0.29 -12.48 7.94 -90.66 -0.72 -13.20 16 22 C 0.05 1.47 5.49 71.98 0.39 1.86 16 23 C -0.16 -5.10 9.52 71.98 0.69 -4.41 16 24 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 29 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.03 1.38 8.05 -2.39 -0.02 1.36 16 32 H 0.05 1.85 8.06 -2.38 -0.02 1.83 16 33 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 34 H 0.03 1.46 7.95 -2.39 -0.02 1.44 16 35 H 0.09 4.72 5.14 -2.39 -0.01 4.71 16 36 H 0.16 5.30 8.04 -2.91 -0.02 5.28 16 37 H 0.19 3.86 8.06 -2.91 -0.02 3.84 16 38 H 0.16 3.84 6.47 -2.91 -0.02 3.82 16 39 H 0.08 2.04 7.71 -2.39 -0.02 2.02 16 40 H 0.07 1.95 7.71 -2.39 -0.02 1.93 16 41 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.11 2.53 8.14 -2.38 -0.02 2.51 16 43 H 0.04 1.63 3.82 -2.38 -0.01 1.62 16 Total: -1.00 -63.59 342.48 4.77 -58.81 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 0.89 Total: 19.57 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: 6.30 Total: -8.64 kcal Atomic # 7 Polarization: -99.10 SS G_CDS: -3.48 Total: -102.58 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: -0.72 Total: -13.20 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.79 Total: 46.03 kcal Total: -63.59 4.77 -58.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139628835.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.898 kcal (2) G-P(sol) polarization free energy of solvation -63.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds