Wall clock time and date at job start Tue Mar 31 2020 01:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47258 * 2 1 4 4 N 1.46894 * 109.47384 * 185.74017 * 3 2 1 5 5 C 1.46906 * 111.00096 * 291.56979 * 4 3 2 6 6 C 1.50695 * 109.47358 * 75.08619 * 5 4 3 7 7 H 1.08003 * 119.99758 * 5.27611 * 6 5 4 8 8 C 1.37873 * 120.00120 * 185.27766 * 6 5 4 9 9 N 1.31513 * 120.00336 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99915 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.46741 * 90.00452 * 10 8 6 12 12 H 1.48502 * 109.46848 * 210.00081 * 10 8 6 13 13 H 1.48500 * 109.47335 * 330.00179 * 10 8 6 14 14 C 1.46897 * 111.00384 * 167.61268 * 4 3 2 15 15 C 1.50698 * 109.46960 * 298.82903 * 14 4 3 16 16 C 1.37986 * 120.45621 * 265.75505 * 15 14 4 17 17 N 1.31954 * 120.82258 * 180.27306 * 16 15 14 18 18 C 1.31973 * 121.86396 * 0.02562 * 17 16 15 19 19 C 1.37950 * 120.82524 * 359.97438 * 18 17 16 20 20 C 1.39248 * 120.45267 * 86.03930 * 15 14 4 21 21 O 1.35746 * 120.84723 * 359.69795 * 20 15 14 22 22 C 1.42903 * 116.99711 * 180.02562 * 21 20 15 23 23 C 1.53001 * 109.46711 * 180.02562 * 22 21 20 24 24 H 1.09003 * 109.46890 * 300.00137 * 1 2 3 25 25 H 1.08998 * 109.46919 * 59.99992 * 1 2 3 26 26 H 1.08996 * 109.46970 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47090 * 240.00289 * 2 1 3 28 28 H 1.08998 * 109.46919 * 120.00008 * 2 1 3 29 29 H 1.09002 * 109.47068 * 65.73721 * 3 2 1 30 30 H 1.08997 * 109.47386 * 305.74351 * 3 2 1 31 31 H 1.08996 * 109.47271 * 195.09034 * 5 4 3 32 32 H 1.08997 * 109.46891 * 315.08734 * 5 4 3 33 33 H 0.96991 * 120.00450 * 179.97438 * 9 8 6 34 34 H 1.08994 * 109.47542 * 178.82817 * 14 4 3 35 35 H 1.08996 * 109.46917 * 58.82667 * 14 4 3 36 36 H 1.08000 * 119.59107 * 0.25472 * 16 15 14 37 37 H 1.08000 * 119.58707 * 180.02562 * 18 17 16 38 38 H 1.07995 * 120.45768 * 180.02562 * 19 18 17 39 39 H 1.08999 * 109.47049 * 299.99983 * 22 21 20 40 40 H 1.08997 * 109.47338 * 60.00147 * 22 21 20 41 41 H 1.08999 * 109.47111 * 299.99652 * 23 22 21 42 42 H 1.08997 * 109.47339 * 59.99855 * 23 22 21 43 43 H 1.09001 * 109.47344 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5025 1.4449 -0.1385 5 6 4.1461 0.8992 1.0641 6 6 3.9882 -0.5993 1.0824 7 1 3.5381 -1.1052 0.2410 8 6 4.4182 -1.3245 2.1733 9 7 4.9658 -0.7085 3.1981 10 14 4.2218 -3.1821 2.1962 11 1 5.4313 -3.8149 1.6116 12 1 4.0493 -3.6443 3.5969 13 1 3.0288 -3.5637 1.3985 14 6 4.0010 2.7942 -0.4362 15 6 3.4151 3.2697 -1.7407 16 6 4.1068 3.0976 -2.9221 17 7 3.6030 3.5160 -4.0677 18 6 2.4275 4.1121 -4.1355 19 6 1.6744 4.3213 -2.9988 20 6 2.1707 3.8940 -1.7695 21 8 1.4594 4.0813 -0.6286 22 6 0.1924 4.7304 -0.7533 23 6 -0.4562 4.8521 0.6271 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.7631 1.9258 0.9369 30 1 1.5953 1.9852 -0.8341 31 1 5.2061 1.1528 1.0557 32 1 3.6778 1.3248 1.9516 33 1 5.2679 -1.2187 3.9657 34 1 5.0880 2.7712 -0.5131 35 1 3.7076 3.4745 0.3633 36 1 5.0728 2.6148 -2.9091 37 1 2.0501 4.4395 -5.0930 38 1 0.7131 4.8094 -3.0612 39 1 0.3336 5.7247 -1.1769 40 1 -0.4530 4.1448 -1.4080 41 1 -0.5975 3.8579 1.0511 42 1 0.1893 5.4379 1.2815 43 1 -1.4225 5.3476 0.5322 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139631626.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:35 Heat of formation + Delta-G solvation = -3.782517 kcal Electronic energy + Delta-G solvation = -22671.020591 eV Core-core repulsion = 19523.645411 eV Total energy + Delta-G solvation = -3147.375180 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.71288 -38.23296 -37.03633 -33.25457 -32.56635 -32.06691 -31.02339 -30.50417 -27.26695 -26.13623 -24.57886 -23.92044 -22.29968 -21.65027 -20.99113 -19.69249 -18.36898 -16.73850 -16.38611 -16.33069 -15.12813 -15.01628 -14.90349 -14.40947 -14.04643 -13.87694 -13.83427 -13.34426 -13.22728 -12.75147 -12.70103 -12.46378 -12.20704 -11.99371 -11.74568 -11.48164 -11.16510 -11.03133 -10.98196 -10.91124 -10.56359 -10.42662 -10.08245 -9.95018 -9.44170 -9.31260 -9.05557 -9.01118 -8.56935 -8.33041 -7.17231 -5.98029 -3.95457 1.23940 1.48268 3.06499 3.34410 3.40702 3.44236 3.93230 4.46309 4.56252 4.68252 4.76201 4.85999 4.95398 5.05398 5.14389 5.23963 5.33234 5.35487 5.57121 5.65494 5.68891 5.81418 5.85380 5.88746 5.93600 6.06268 6.12438 6.25309 6.30450 6.34466 6.51984 6.62110 6.69212 6.75036 7.09018 7.25942 7.28496 7.42582 7.52587 7.88692 8.15537 8.17354 8.27561 8.60672 9.10042 9.64714 11.12435 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018191 B = 0.005385 C = 0.004825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.834044 B = 5198.050132 C = 5802.179526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.130 4.130 3 C 0.079 3.921 4 N -0.532 5.532 5 C 0.192 3.808 6 C -0.498 4.498 7 H 0.072 0.928 8 C 0.053 3.947 9 N -0.900 5.900 10 Si 0.892 3.108 11 H -0.281 1.281 12 H -0.289 1.289 13 H -0.273 1.273 14 C 0.103 3.897 15 C -0.144 4.144 16 C 0.146 3.854 17 N -0.511 5.511 18 C 0.123 3.877 19 C -0.267 4.267 20 C 0.173 3.827 21 O -0.299 6.299 22 C 0.053 3.947 23 C -0.152 4.152 24 H 0.044 0.956 25 H 0.037 0.963 26 H 0.046 0.954 27 H 0.057 0.943 28 H 0.104 0.896 29 H 0.019 0.981 30 H 0.052 0.948 31 H 0.024 0.976 32 H -0.003 1.003 33 H 0.260 0.740 34 H 0.079 0.921 35 H 0.036 0.964 36 H 0.163 0.837 37 H 0.152 0.848 38 H 0.133 0.867 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.828 11.734 -8.985 17.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.168 4.168 3 C -0.049 4.049 4 N -0.257 5.257 5 C 0.067 3.933 6 C -0.537 4.537 7 H 0.090 0.910 8 C -0.148 4.148 9 N -0.540 5.540 10 Si 0.720 3.280 11 H -0.207 1.207 12 H -0.215 1.215 13 H -0.198 1.198 14 C -0.026 4.026 15 C -0.147 4.147 16 C -0.010 4.010 17 N -0.223 5.223 18 C -0.034 4.034 19 C -0.288 4.288 20 C 0.119 3.881 21 O -0.210 6.210 22 C -0.022 4.022 23 C -0.210 4.210 24 H 0.064 0.936 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.122 0.878 29 H 0.038 0.962 30 H 0.070 0.930 31 H 0.042 0.958 32 H 0.015 0.985 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.054 0.946 36 H 0.180 0.820 37 H 0.169 0.831 38 H 0.151 0.849 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.119 11.219 -9.701 17.411 hybrid contribution -1.012 -0.207 1.418 1.755 sum -10.132 11.013 -8.283 17.104 Atomic orbital electron populations 1.21786 0.98189 1.00427 1.00077 1.21984 0.92426 0.97530 1.04837 1.21939 0.88374 0.96367 0.98248 1.62273 1.05076 1.17187 1.41117 1.19771 0.93808 0.95262 0.84463 1.21326 1.38515 0.91373 1.02472 0.90977 1.24985 0.95685 0.98424 0.95700 1.69957 1.41552 1.35528 1.06946 0.86584 0.78611 0.85777 0.77008 1.20692 1.21454 1.19759 1.20785 0.99123 0.91543 0.91131 1.20487 0.93586 1.01856 0.98793 1.22578 0.99231 0.93277 0.85901 1.67726 1.13323 1.12430 1.28799 1.22431 0.89866 0.93607 0.97493 1.22116 1.03598 1.09754 0.93347 1.19124 0.91051 0.92475 0.85404 1.86245 1.31475 1.73989 1.29291 1.22805 0.83228 0.96502 0.99658 1.21771 1.00154 1.03688 0.95338 0.93647 0.94406 0.93463 0.92462 0.87832 0.96233 0.92993 0.95828 0.98503 0.93056 0.90233 0.94607 0.82003 0.83098 0.84936 0.92200 0.91978 0.91100 0.91479 0.90501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.91 37.16 0.37 -2.07 16 2 C -0.13 -2.66 4.56 -26.73 -0.12 -2.78 16 3 C 0.08 1.60 3.81 -3.83 -0.01 1.58 16 4 N -0.53 -11.59 4.54 -237.53 -1.08 -12.67 16 5 C 0.19 4.95 4.74 -4.97 -0.02 4.92 16 6 C -0.50 -13.63 6.63 -34.44 -0.23 -13.86 16 7 H 0.07 1.96 5.92 -52.48 -0.31 1.65 16 8 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 9 N -0.90 -26.52 13.29 55.43 0.74 -25.78 16 10 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 14 C 0.10 1.92 4.97 -4.98 -0.02 1.89 16 15 C -0.14 -2.37 4.91 -104.34 -0.51 -2.88 16 16 C 0.15 2.27 10.84 -17.59 -0.19 2.08 16 17 N -0.51 -7.71 10.36 -13.33 -0.14 -7.85 16 18 C 0.12 1.56 11.17 -17.60 -0.20 1.37 16 19 C -0.27 -3.32 9.11 -39.30 -0.36 -3.68 16 20 C 0.17 2.59 5.27 -38.81 -0.20 2.39 16 21 O -0.30 -4.35 7.32 -18.94 -0.14 -4.49 16 22 C 0.05 0.55 5.49 37.16 0.20 0.75 16 23 C -0.15 -1.41 10.28 37.16 0.38 -1.03 16 24 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 1.21 7.76 -51.93 -0.40 0.81 16 28 H 0.10 2.44 5.44 -51.93 -0.28 2.16 16 29 H 0.02 0.42 7.91 -51.93 -0.41 0.01 16 30 H 0.05 0.99 4.51 -51.93 -0.23 0.75 16 31 H 0.02 0.64 7.82 -51.93 -0.41 0.24 16 32 H 0.00 -0.08 7.85 -51.93 -0.41 -0.49 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.08 1.42 7.88 -51.93 -0.41 1.01 16 35 H 0.04 0.69 7.74 -51.93 -0.40 0.29 16 36 H 0.16 2.31 8.06 -52.49 -0.42 1.88 16 37 H 0.15 1.41 8.06 -52.49 -0.42 0.98 16 38 H 0.13 1.26 6.47 -52.49 -0.34 0.92 16 39 H 0.06 0.52 7.71 -51.93 -0.40 0.12 16 40 H 0.06 0.58 7.71 -51.93 -0.40 0.18 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 341.52 15.07 5.15 5.15 Total: -1.00 -30.71 341.52 -8.43 -39.15 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -6.92 Total: -0.09 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: -1.02 Total: -9.93 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: -0.48 Total: -46.30 kcal Atomic # 8 Polarization: -4.35 SS G_CDS: -0.14 Total: -4.49 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.71 -8.43 -39.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139631626.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.366 kcal (2) G-P(sol) polarization free energy of solvation -30.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds