Wall clock time and date at job start Tue Mar 31 2020 00:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46810 * 2 1 4 4 C 1.53003 * 109.46810 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.46987 * 179.97438 * 4 3 2 6 6 C 1.36941 * 120.00083 * 269.99746 * 5 4 3 7 7 H 1.08007 * 119.99893 * 41.34511 * 6 5 4 8 8 C 1.38813 * 120.00023 * 221.34335 * 6 5 4 9 9 N 1.31621 * 119.99697 * 17.84453 * 8 6 5 10 10 Si 1.86801 * 119.99964 * 197.83759 * 8 6 5 11 11 H 1.48501 * 109.46860 * 90.00147 * 10 8 6 12 12 H 1.48494 * 109.47014 * 210.00096 * 10 8 6 13 13 H 1.48497 * 109.47008 * 330.00733 * 10 8 6 14 14 C 1.46501 * 120.00165 * 89.99703 * 5 4 3 15 15 C 1.50698 * 109.47212 * 275.79103 * 14 5 4 16 16 C 1.38248 * 119.92273 * 96.57736 * 15 14 5 17 17 C 1.38285 * 120.17988 * 180.02562 * 16 15 14 18 18 C 1.38506 * 120.01985 * 359.97438 * 17 16 15 19 19 O 1.36016 * 120.07828 * 180.02562 * 18 17 16 20 20 C 1.42898 * 117.00097 * 0.02562 * 19 18 17 21 21 C 1.39312 * 119.83824 * 0.27698 * 18 17 16 22 22 N 1.39970 * 120.08929 * 179.72389 * 21 18 17 23 23 C 1.38226 * 119.91735 * 276.60135 * 15 14 5 24 24 H 1.08998 * 109.46787 * 60.00884 * 1 2 3 25 25 H 1.09006 * 109.46651 * 180.02562 * 1 2 3 26 26 H 1.08990 * 109.47586 * 300.00448 * 1 2 3 27 27 H 1.08997 * 109.47010 * 239.99240 * 2 1 3 28 28 H 1.09006 * 109.46864 * 119.99760 * 2 1 3 29 29 H 1.08990 * 109.47412 * 59.99446 * 3 2 1 30 30 H 1.09003 * 109.47156 * 299.99017 * 3 2 1 31 31 H 1.08997 * 109.47245 * 59.99739 * 4 3 2 32 32 H 1.09001 * 109.47192 * 299.99432 * 4 3 2 33 33 H 0.97007 * 119.99340 * 180.02562 * 9 8 6 34 34 H 1.09000 * 109.47196 * 155.78594 * 14 5 4 35 35 H 1.09002 * 109.47017 * 35.78999 * 14 5 4 36 36 H 1.08004 * 119.91191 * 359.97438 * 16 15 14 37 37 H 1.08002 * 119.99309 * 179.97438 * 17 16 15 38 38 H 1.09002 * 109.46884 * 179.97438 * 20 19 18 39 39 H 1.09000 * 109.47210 * 299.99343 * 20 19 18 40 40 H 1.08997 * 109.47176 * 59.99917 * 20 19 18 41 41 H 0.96996 * 119.99773 * 0.02562 * 22 21 18 42 42 H 0.96995 * 119.99888 * 179.97438 * 22 21 18 43 43 H 1.08000 * 120.00784 * 359.97438 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 -0.0013 6 6 4.2860 3.4689 -1.1875 7 1 3.5905 3.3558 -2.0060 8 6 5.4109 4.2683 -1.3380 9 7 6.4240 4.1419 -0.5072 10 14 5.4868 5.5233 -2.7195 11 1 4.9361 6.8176 -2.2433 12 1 6.8983 5.7109 -3.1408 13 1 4.6861 5.0391 -3.8726 14 6 4.3029 3.5148 1.2671 15 6 3.0127 4.1059 1.7742 16 6 2.2598 3.4192 2.7084 17 6 1.0748 3.9564 3.1769 18 6 0.6392 5.1858 2.7108 19 8 -0.5259 5.7155 3.1712 20 6 -1.2503 4.9497 4.1360 21 6 1.3946 5.8760 1.7655 22 7 0.9564 7.1160 1.2865 23 6 2.5848 5.3331 1.3035 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8898 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6765 1.9563 0.8898 30 1 1.6767 1.9563 -0.8901 31 1 3.9329 0.9288 -0.8908 32 1 3.9337 0.9286 0.8892 33 1 7.2098 4.7008 -0.6122 34 1 5.0313 4.3108 1.1126 35 1 4.6897 2.8053 1.9987 36 1 2.5976 2.4602 3.0728 37 1 0.4888 3.4172 3.9065 38 1 -2.1568 5.4850 4.4184 39 1 -1.5171 3.9838 3.7070 40 1 -0.6294 4.7963 5.0186 41 1 0.1260 7.4961 1.6131 42 1 1.4836 7.5956 0.6286 43 1 3.1749 5.8674 0.5737 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140898204.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:16:55 Heat of formation + Delta-G solvation = -8.755538 kcal Electronic energy + Delta-G solvation = -22497.952387 eV Core-core repulsion = 19350.361560 eV Total energy + Delta-G solvation = -3147.590827 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.69005 -37.39162 -35.94591 -34.17901 -33.67746 -31.28942 -30.06083 -28.35398 -27.83231 -27.10661 -25.01524 -23.65246 -21.75352 -21.27047 -20.30607 -19.91841 -17.63636 -16.72828 -16.55950 -15.71688 -15.42170 -14.83298 -14.78441 -14.63359 -13.71735 -13.65492 -13.51956 -13.37039 -13.11950 -12.87821 -12.51799 -12.20259 -11.83628 -11.65407 -11.38068 -11.16806 -10.95340 -10.78187 -10.70147 -10.58837 -10.46762 -10.39623 -10.26596 -10.07039 -9.99799 -9.74261 -9.40935 -8.45288 -7.74572 -6.71817 -6.47580 -5.78192 -3.38516 2.08184 2.25600 3.34620 3.42892 3.44673 3.61849 4.37784 4.44037 4.55540 5.16911 5.27534 5.33295 5.36747 5.39247 5.45490 5.54613 5.65396 5.70538 5.84269 6.00218 6.07347 6.20319 6.21604 6.24407 6.37951 6.41627 6.46935 6.47591 6.70768 6.73736 6.77906 6.87177 7.05448 7.09871 7.29666 7.44097 7.50554 7.60468 7.76282 7.84834 8.14313 8.26123 8.58316 9.22571 9.82601 10.44902 11.22399 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.012511 B = 0.007059 C = 0.005205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.523551 B = 3965.699297 C = 5377.638466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.142 4.142 4 C 0.151 3.849 5 N -0.574 5.574 6 C -0.253 4.253 7 H 0.056 0.944 8 C 0.016 3.984 9 N -0.887 5.887 10 Si 0.894 3.106 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.277 1.277 14 C 0.184 3.816 15 C -0.054 4.054 16 C -0.141 4.141 17 C -0.165 4.165 18 C 0.022 3.978 19 O -0.330 6.330 20 C 0.036 3.964 21 C 0.188 3.812 22 N -0.881 5.881 23 C -0.143 4.143 24 H 0.049 0.951 25 H 0.044 0.956 26 H 0.049 0.951 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.045 0.955 32 H 0.030 0.970 33 H 0.255 0.745 34 H 0.096 0.904 35 H 0.032 0.968 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.089 0.911 39 H 0.048 0.952 40 H 0.048 0.952 41 H 0.395 0.605 42 H 0.395 0.605 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.692 -0.414 7.152 13.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C -0.182 4.182 4 C 0.024 3.976 5 N -0.293 5.293 6 C -0.384 4.384 7 H 0.074 0.926 8 C -0.185 4.185 9 N -0.528 5.528 10 Si 0.723 3.277 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.202 1.202 14 C 0.058 3.942 15 C -0.058 4.058 16 C -0.162 4.162 17 C -0.184 4.184 18 C -0.025 4.025 19 O -0.245 6.245 20 C -0.059 4.059 21 C 0.086 3.914 22 N -0.423 5.423 23 C -0.166 4.166 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.048 0.952 33 H 0.065 0.935 34 H 0.114 0.886 35 H 0.050 0.950 36 H 0.129 0.871 37 H 0.132 0.868 38 H 0.107 0.893 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.222 0.778 42 H 0.222 0.778 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.534 -0.242 7.097 13.545 hybrid contribution -0.255 0.793 -0.685 1.078 sum -11.789 0.550 6.412 13.431 Atomic orbital electron populations 1.21751 0.96924 1.00370 1.01476 1.21494 0.94883 0.98580 1.01030 1.22301 0.99581 0.94299 1.02032 1.20877 0.91068 0.86978 0.98637 1.43626 1.76131 1.07965 1.01576 1.18977 1.02616 1.25009 0.91749 0.92631 1.25274 0.94478 1.01120 0.97592 1.70005 1.04710 1.39227 1.38882 0.86437 0.76865 0.81993 0.82366 1.21276 1.21700 1.20249 1.19897 0.90798 0.97108 0.86446 1.20967 0.99512 0.92531 0.92787 1.20571 0.95230 1.00127 1.00293 1.20829 0.99006 0.95361 1.03222 1.18245 0.88609 0.95051 1.00592 1.85884 1.33538 1.46970 1.58071 1.22832 0.95592 0.96420 0.91090 1.17192 0.93361 0.87042 0.93839 1.42223 1.28656 1.20770 1.50641 1.20431 0.95322 0.97733 1.03126 0.93153 0.93703 0.93185 0.92706 0.92810 0.91907 0.92872 0.93661 0.95165 0.93508 0.88626 0.95005 0.87116 0.86798 0.89279 0.93316 0.93344 0.77757 0.77755 0.85682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 37.16 0.37 -1.63 16 2 C -0.12 -1.85 5.93 -26.73 -0.16 -2.01 16 3 C -0.14 -2.66 5.41 -26.73 -0.14 -2.80 16 4 C 0.15 3.20 5.70 -4.04 -0.02 3.17 16 5 N -0.57 -13.96 2.39 -174.60 -0.42 -14.38 16 6 C -0.25 -6.76 9.44 -15.06 -0.14 -6.91 16 7 H 0.06 1.52 7.89 -52.48 -0.41 1.11 16 8 C 0.02 0.43 4.95 -17.43 -0.09 0.34 16 9 N -0.89 -24.90 11.62 55.49 0.64 -24.26 16 10 Si 0.89 21.16 29.59 -169.99 -5.03 16.13 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 14 C 0.18 4.25 5.37 -5.19 -0.03 4.22 16 15 C -0.05 -1.11 4.94 -104.62 -0.52 -1.63 16 16 C -0.14 -2.56 7.75 -39.56 -0.31 -2.87 16 17 C -0.16 -2.73 9.04 -39.47 -0.36 -3.08 16 18 C 0.02 0.39 6.70 -39.08 -0.26 0.13 16 19 O -0.33 -4.99 9.74 -19.79 -0.19 -5.18 16 20 C 0.04 0.40 9.81 101.05 0.99 1.39 16 21 C 0.19 3.42 6.77 -83.56 -0.57 2.85 16 22 N -0.88 -13.27 9.09 32.51 0.30 -12.97 16 23 C -0.14 -2.90 9.57 -39.41 -0.38 -3.27 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 1.21 5.61 -51.93 -0.29 0.91 16 30 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.04 0.99 8.04 -51.93 -0.42 0.57 16 32 H 0.03 0.61 7.95 -51.93 -0.41 0.20 16 33 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 34 H 0.10 2.49 5.75 -51.93 -0.30 2.19 16 35 H 0.03 0.71 7.87 -51.93 -0.41 0.30 16 36 H 0.11 1.88 8.05 -52.48 -0.42 1.45 16 37 H 0.11 1.58 6.30 -52.49 -0.33 1.25 16 38 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 40 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 41 H 0.39 5.30 8.19 -40.82 -0.33 4.96 16 42 H 0.39 5.43 8.85 -40.82 -0.36 5.07 16 43 H 0.13 2.70 8.06 -52.49 -0.42 2.28 16 LS Contribution 348.26 15.07 5.25 5.25 Total: -1.00 -28.98 348.26 -8.06 -37.05 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -7.00 Total: 10.46 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: -1.61 Total: -12.09 kcal Atomic # 7 Polarization: -52.13 SS G_CDS: 0.52 Total: -51.61 kcal Atomic # 8 Polarization: -4.99 SS G_CDS: -0.19 Total: -5.18 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.13 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -28.98 -8.06 -37.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140898204.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.292 kcal (2) G-P(sol) polarization free energy of solvation -28.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds