Wall clock time and date at job start Tue Mar 31 2020 00:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46810 * 2 1 4 4 C 1.53003 * 109.46810 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.46987 * 179.97438 * 4 3 2 6 6 C 1.36941 * 120.00083 * 269.99746 * 5 4 3 7 7 H 1.08007 * 119.99893 * 41.34511 * 6 5 4 8 8 C 1.38813 * 120.00023 * 221.34335 * 6 5 4 9 9 N 1.31621 * 119.99697 * 17.84453 * 8 6 5 10 10 Si 1.86801 * 119.99964 * 197.83759 * 8 6 5 11 11 H 1.48501 * 109.46860 * 90.00147 * 10 8 6 12 12 H 1.48494 * 109.47014 * 210.00096 * 10 8 6 13 13 H 1.48497 * 109.47008 * 330.00733 * 10 8 6 14 14 C 1.46501 * 120.00165 * 89.99703 * 5 4 3 15 15 C 1.50698 * 109.47212 * 275.79103 * 14 5 4 16 16 C 1.38248 * 119.92273 * 96.57736 * 15 14 5 17 17 C 1.38285 * 120.17988 * 180.02562 * 16 15 14 18 18 C 1.38506 * 120.01985 * 359.97438 * 17 16 15 19 19 O 1.36016 * 120.07828 * 180.02562 * 18 17 16 20 20 C 1.42898 * 117.00097 * 0.02562 * 19 18 17 21 21 C 1.39312 * 119.83824 * 0.27698 * 18 17 16 22 22 N 1.39970 * 120.08929 * 179.72389 * 21 18 17 23 23 C 1.38226 * 119.91735 * 276.60135 * 15 14 5 24 24 H 1.08998 * 109.46787 * 60.00884 * 1 2 3 25 25 H 1.09006 * 109.46651 * 180.02562 * 1 2 3 26 26 H 1.08990 * 109.47586 * 300.00448 * 1 2 3 27 27 H 1.08997 * 109.47010 * 239.99240 * 2 1 3 28 28 H 1.09006 * 109.46864 * 119.99760 * 2 1 3 29 29 H 1.08990 * 109.47412 * 59.99446 * 3 2 1 30 30 H 1.09003 * 109.47156 * 299.99017 * 3 2 1 31 31 H 1.08997 * 109.47245 * 59.99739 * 4 3 2 32 32 H 1.09001 * 109.47192 * 299.99432 * 4 3 2 33 33 H 0.97007 * 119.99340 * 180.02562 * 9 8 6 34 34 H 1.09000 * 109.47196 * 155.78594 * 14 5 4 35 35 H 1.09002 * 109.47017 * 35.78999 * 14 5 4 36 36 H 1.08004 * 119.91191 * 359.97438 * 16 15 14 37 37 H 1.08002 * 119.99309 * 179.97438 * 17 16 15 38 38 H 1.09002 * 109.46884 * 179.97438 * 20 19 18 39 39 H 1.09000 * 109.47210 * 299.99343 * 20 19 18 40 40 H 1.08997 * 109.47176 * 59.99917 * 20 19 18 41 41 H 0.96996 * 119.99773 * 0.02562 * 22 21 18 42 42 H 0.96995 * 119.99888 * 179.97438 * 22 21 18 43 43 H 1.08000 * 120.00784 * 359.97438 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 -0.0013 6 6 4.2860 3.4689 -1.1875 7 1 3.5905 3.3558 -2.0060 8 6 5.4109 4.2683 -1.3380 9 7 6.4240 4.1419 -0.5072 10 14 5.4868 5.5233 -2.7195 11 1 4.9361 6.8176 -2.2433 12 1 6.8983 5.7109 -3.1408 13 1 4.6861 5.0391 -3.8726 14 6 4.3029 3.5148 1.2671 15 6 3.0127 4.1059 1.7742 16 6 2.2598 3.4192 2.7084 17 6 1.0748 3.9564 3.1769 18 6 0.6392 5.1858 2.7108 19 8 -0.5259 5.7155 3.1712 20 6 -1.2503 4.9497 4.1360 21 6 1.3946 5.8760 1.7655 22 7 0.9564 7.1160 1.2865 23 6 2.5848 5.3331 1.3035 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8898 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6765 1.9563 0.8898 30 1 1.6767 1.9563 -0.8901 31 1 3.9329 0.9288 -0.8908 32 1 3.9337 0.9286 0.8892 33 1 7.2098 4.7008 -0.6122 34 1 5.0313 4.3108 1.1126 35 1 4.6897 2.8053 1.9987 36 1 2.5976 2.4602 3.0728 37 1 0.4888 3.4172 3.9065 38 1 -2.1568 5.4850 4.4184 39 1 -1.5171 3.9838 3.7070 40 1 -0.6294 4.7963 5.0186 41 1 0.1260 7.4961 1.6131 42 1 1.4836 7.5956 0.6286 43 1 3.1749 5.8674 0.5737 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140898204.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:16:54 Heat of formation + Delta-G solvation = -25.205791 kcal Electronic energy + Delta-G solvation = -22498.665723 eV Core-core repulsion = 19350.361560 eV Total energy + Delta-G solvation = -3148.304163 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.00556 -38.82650 -37.48432 -35.58279 -35.18448 -33.16849 -31.52321 -29.65655 -29.32446 -28.35014 -26.72341 -25.22209 -23.13973 -22.75897 -21.71491 -21.59727 -18.90251 -18.59443 -17.89407 -17.13326 -16.70436 -16.49481 -16.24014 -15.89771 -15.46845 -15.18819 -15.11380 -14.71520 -14.43465 -14.22288 -13.78973 -13.73124 -13.30273 -13.05720 -12.92761 -12.76054 -12.70595 -12.41255 -12.10015 -11.98307 -11.96156 -11.81693 -11.73697 -11.72566 -11.55295 -11.41521 -10.93640 -10.48452 -9.19098 -8.45966 -8.04951 -7.80189 -5.46179 0.65137 0.82121 1.43734 1.45850 1.54203 2.50315 2.51047 3.02278 3.13074 3.29064 3.87298 4.04421 4.21660 4.23828 4.34028 4.46823 4.47908 4.49206 4.56259 4.61989 4.70000 4.77607 4.80905 4.90141 4.95630 5.05473 5.09798 5.12817 5.19038 5.22762 5.36669 5.45299 5.55878 5.57400 5.64629 5.71059 5.75481 6.00511 6.13194 6.38651 6.53989 6.84079 7.09835 7.21407 7.88737 8.44989 9.15621 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.012511 B = 0.007059 C = 0.005205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.523551 B = 3965.699297 C = 5377.638466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.117 4.117 3 C -0.126 4.126 4 C 0.149 3.851 5 N -0.589 5.589 6 C -0.258 4.258 7 H 0.043 0.957 8 C -0.027 4.027 9 N -0.916 5.916 10 Si 0.950 3.050 11 H -0.282 1.282 12 H -0.292 1.292 13 H -0.273 1.273 14 C 0.192 3.808 15 C -0.070 4.070 16 C -0.142 4.142 17 C -0.156 4.156 18 C 0.028 3.972 19 O -0.338 6.338 20 C 0.024 3.976 21 C 0.182 3.818 22 N -0.871 5.871 23 C -0.164 4.164 24 H 0.043 0.957 25 H 0.067 0.933 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.028 0.972 31 H 0.030 0.970 32 H 0.040 0.960 33 H 0.252 0.748 34 H 0.061 0.939 35 H 0.031 0.969 36 H 0.123 0.877 37 H 0.149 0.851 38 H 0.117 0.883 39 H 0.057 0.943 40 H 0.059 0.941 41 H 0.405 0.595 42 H 0.400 0.600 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.356 -0.880 8.438 16.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.155 4.155 3 C -0.165 4.165 4 C 0.023 3.977 5 N -0.309 5.309 6 C -0.389 4.389 7 H 0.061 0.939 8 C -0.224 4.224 9 N -0.559 5.559 10 Si 0.778 3.222 11 H -0.209 1.209 12 H -0.218 1.218 13 H -0.198 1.198 14 C 0.067 3.933 15 C -0.074 4.074 16 C -0.163 4.163 17 C -0.175 4.175 18 C -0.020 4.020 19 O -0.253 6.253 20 C -0.070 4.070 21 C 0.078 3.922 22 N -0.413 5.413 23 C -0.188 4.188 24 H 0.062 0.938 25 H 0.086 0.914 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.046 0.954 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.049 0.951 36 H 0.141 0.859 37 H 0.166 0.834 38 H 0.136 0.864 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.234 0.766 42 H 0.228 0.772 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -14.243 -0.699 8.393 16.546 hybrid contribution 0.461 0.939 -0.986 1.438 sum -13.782 0.241 7.407 15.648 Atomic orbital electron populations 1.21710 0.95206 1.01876 1.01321 1.21454 0.96347 0.95917 1.01803 1.22074 0.97277 0.96582 1.00611 1.20971 0.92863 0.85470 0.98358 1.43801 1.76621 1.09193 1.01274 1.19043 1.02149 1.25297 0.92416 0.93914 1.25853 0.94198 1.02678 0.99709 1.70118 1.05145 1.40128 1.40531 0.85558 0.76557 0.80023 0.80074 1.20862 1.21808 1.19804 1.19643 0.91700 0.95956 0.86040 1.20638 0.98832 0.93275 0.94617 1.20633 0.95584 1.00406 0.99630 1.21125 0.98303 0.95079 1.03013 1.18341 0.89114 0.94900 0.99690 1.85889 1.32588 1.47825 1.58949 1.23206 0.96332 0.97012 0.90456 1.17219 0.92856 0.88006 0.94156 1.42176 1.28982 1.19822 1.50366 1.20234 0.96557 0.98172 1.03815 0.93775 0.91372 0.92902 0.92577 0.91430 0.92135 0.95358 0.95108 0.94118 0.93868 0.92095 0.95058 0.85901 0.83360 0.86439 0.92481 0.92234 0.76567 0.77179 0.88317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 9.91 71.98 0.71 -2.78 16 2 C -0.12 -3.34 5.93 30.59 0.18 -3.16 16 3 C -0.13 -4.65 5.41 30.59 0.17 -4.48 16 4 C 0.15 6.41 5.70 86.38 0.49 6.90 16 5 N -0.59 -29.62 2.39 -706.32 -1.69 -31.31 16 6 C -0.26 -14.31 9.44 84.03 0.79 -13.52 16 7 H 0.04 2.44 7.89 -2.91 -0.02 2.42 16 8 C -0.03 -1.48 4.95 84.86 0.42 -1.06 16 9 N -0.92 -53.47 11.62 21.65 0.25 -53.22 16 10 Si 0.95 44.80 29.59 68.60 2.03 46.83 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 12 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 13 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 14 C 0.19 9.26 5.37 85.63 0.46 9.72 16 15 C -0.07 -2.93 4.94 -19.87 -0.10 -3.02 16 16 C -0.14 -4.94 7.75 22.28 0.17 -4.77 16 17 C -0.16 -4.71 9.04 22.34 0.20 -4.51 16 18 C 0.03 0.89 6.70 22.59 0.15 1.04 16 19 O -0.34 -9.09 9.74 -93.74 -0.91 -10.01 16 20 C 0.02 0.43 9.81 113.37 1.11 1.54 16 21 C 0.18 6.47 6.77 38.22 0.26 6.73 16 22 N -0.87 -25.41 9.09 -51.05 -0.46 -25.88 16 23 C -0.16 -6.83 9.57 22.38 0.21 -6.61 16 24 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 26 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 29 H 0.06 2.26 5.61 -2.39 -0.01 2.25 16 30 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.03 1.38 8.04 -2.39 -0.02 1.36 16 32 H 0.04 1.64 7.95 -2.39 -0.02 1.62 16 33 H 0.25 14.23 8.31 -92.70 -0.77 13.46 16 34 H 0.06 3.36 5.75 -2.39 -0.01 3.34 16 35 H 0.03 1.45 7.87 -2.39 -0.02 1.43 16 36 H 0.12 3.93 8.05 -2.91 -0.02 3.90 16 37 H 0.15 3.42 6.30 -2.91 -0.02 3.40 16 38 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.06 0.93 7.66 -2.39 -0.02 0.91 16 40 H 0.06 0.94 7.66 -2.39 -0.02 0.92 16 41 H 0.41 10.15 8.19 -92.71 -0.76 9.39 16 42 H 0.40 10.88 8.85 -92.71 -0.82 10.06 16 43 H 0.10 4.54 8.06 -2.91 -0.02 4.51 16 Total: -1.00 -64.15 348.26 3.88 -60.27 By element: Atomic # 1 Polarization: 31.88 SS G_CDS: -0.57 Total: 31.30 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: 5.24 Total: -18.00 kcal Atomic # 7 Polarization: -108.51 SS G_CDS: -1.90 Total: -110.41 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: -0.91 Total: -10.01 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -64.15 3.88 -60.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140898204.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.068 kcal (2) G-P(sol) polarization free energy of solvation -64.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds