Wall clock time and date at job start Tue Mar 31 2020 01:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46947 * 2 1 4 4 N 1.46898 * 109.47125 * 181.10515 * 3 2 1 5 5 C 1.46902 * 111.00011 * 299.44008 * 4 3 2 6 6 C 1.50695 * 109.47301 * 294.06191 * 5 4 3 7 7 H 1.08004 * 120.00021 * 355.09144 * 6 5 4 8 8 C 1.37875 * 120.00181 * 175.09187 * 6 5 4 9 9 N 1.31515 * 119.99877 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 120.00152 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47220 * 60.00563 * 10 8 6 12 12 H 1.48507 * 109.47013 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47291 * 299.99847 * 10 8 6 14 14 C 1.46895 * 110.99921 * 63.39896 * 4 3 2 15 15 C 1.50701 * 109.47354 * 66.04511 * 14 4 3 16 16 C 1.38254 * 119.92095 * 90.00145 * 15 14 4 17 17 C 1.38277 * 120.18119 * 180.02562 * 16 15 14 18 18 C 1.38503 * 120.01771 * 359.97438 * 17 16 15 19 19 O 1.36018 * 120.08040 * 180.02562 * 18 17 16 20 20 C 1.42896 * 116.99869 * 359.97438 * 19 18 17 21 21 C 1.39311 * 119.84153 * 0.27452 * 18 17 16 22 22 N 1.39971 * 120.09164 * 179.72784 * 21 18 17 23 23 C 1.38224 * 119.92021 * 270.02037 * 15 14 4 24 24 H 1.08992 * 109.47634 * 299.99719 * 1 2 3 25 25 H 1.08994 * 109.46953 * 60.00333 * 1 2 3 26 26 H 1.09001 * 109.46407 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47464 * 240.00215 * 2 1 3 28 28 H 1.09002 * 109.47267 * 119.99789 * 2 1 3 29 29 H 1.08996 * 109.47037 * 61.10606 * 3 2 1 30 30 H 1.08997 * 109.47088 * 301.10970 * 3 2 1 31 31 H 1.09000 * 109.46902 * 54.06480 * 5 4 3 32 32 H 1.09001 * 109.46671 * 174.05957 * 5 4 3 33 33 H 0.97001 * 120.00293 * 180.02562 * 9 8 6 34 34 H 1.08996 * 109.47213 * 306.04000 * 14 4 3 35 35 H 1.09004 * 109.46941 * 186.04548 * 14 4 3 36 36 H 1.08005 * 119.91083 * 359.97438 * 16 15 14 37 37 H 1.08001 * 119.99401 * 179.97438 * 17 16 15 38 38 H 1.08994 * 109.47341 * 300.00239 * 20 19 18 39 39 H 1.08999 * 109.47050 * 60.00504 * 20 19 18 40 40 H 1.09000 * 109.47149 * 180.02562 * 20 19 18 41 41 H 0.96999 * 119.99929 * 0.02562 * 22 21 18 42 42 H 0.97003 * 119.99688 * 179.97438 * 22 21 18 43 43 H 1.08005 * 120.00250 * 0.02562 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5087 1.4427 -0.0267 5 6 4.0568 0.7610 1.1535 6 6 3.7184 1.5503 2.3918 7 1 3.2225 2.5058 2.3045 8 6 4.0419 1.0528 3.6363 9 7 4.6462 -0.1105 3.7427 10 14 3.6231 2.0315 5.1712 11 1 2.1545 2.2409 5.2394 12 1 4.0733 1.2841 6.3730 13 1 4.3092 3.3476 5.1217 14 6 4.0127 0.8366 -1.2662 15 6 3.6327 1.7025 -2.4396 16 6 4.4834 2.7087 -2.8582 17 6 4.1399 3.5069 -3.9339 18 6 2.9410 3.2993 -4.5957 19 8 2.6021 4.0833 -5.6543 20 6 3.5300 5.1031 -6.0296 21 6 2.0808 2.2890 -4.1713 22 7 0.8654 2.0784 -4.8328 23 6 2.4343 1.4892 -3.0945 24 1 -0.3634 0.5137 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6929 1.9506 0.8997 30 1 1.6605 1.9621 -0.8798 31 1 3.6253 -0.2371 1.2296 32 1 5.1397 0.6823 1.0573 33 1 4.8735 -0.4607 4.6182 34 1 3.5762 -0.1545 -1.3896 35 1 5.0982 0.7515 -1.2138 36 1 5.4185 2.8724 -2.3431 37 1 4.8065 4.2923 -4.2581 38 1 3.6761 5.7870 -5.1936 39 1 4.4831 4.6467 -6.2966 40 1 3.1383 5.6538 -6.8849 41 1 0.6212 2.6360 -5.5880 42 1 0.2676 1.3743 -4.5364 43 1 1.7713 0.7029 -2.7648 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140899864.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:57 Heat of formation + Delta-G solvation = -14.127041 kcal Electronic energy + Delta-G solvation = -22024.130861 eV Core-core repulsion = 18876.307108 eV Total energy + Delta-G solvation = -3147.823753 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.10078 -38.12273 -36.62452 -34.37633 -32.76439 -32.01508 -30.33204 -28.70152 -27.67146 -26.74425 -25.63787 -23.64339 -22.13458 -22.03595 -20.95470 -19.09067 -17.92703 -16.99359 -16.33400 -15.95190 -15.69176 -15.12201 -15.03607 -14.59060 -14.37971 -13.96437 -13.75683 -13.51666 -13.25896 -12.97628 -12.76714 -12.30890 -11.98532 -11.53260 -11.42226 -11.21523 -11.09682 -10.98935 -10.88947 -10.79381 -10.71992 -10.61586 -10.38808 -10.22876 -9.86879 -9.62896 -9.15715 -8.38840 -8.20244 -7.10597 -7.03168 -5.97917 -3.98440 1.63585 1.86397 3.32654 3.36360 3.40166 3.43561 4.00587 4.07796 4.47824 4.93664 5.05153 5.10143 5.22397 5.31616 5.36191 5.37857 5.50997 5.56187 5.60038 5.70044 5.80132 5.88824 5.91131 6.16004 6.17261 6.29517 6.30599 6.41701 6.48304 6.57059 6.62840 6.81927 7.00723 7.02609 7.11840 7.26611 7.38971 7.49300 7.76768 7.86978 7.90762 8.16479 8.28407 8.62753 9.09734 9.65403 11.12638 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022463 B = 0.004210 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.198287 B = 6649.289241 C = 7233.713889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.164 4.164 3 C 0.065 3.935 4 N -0.528 5.528 5 C 0.188 3.812 6 C -0.502 4.502 7 H 0.062 0.938 8 C 0.055 3.945 9 N -0.900 5.900 10 Si 0.895 3.105 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.277 1.277 14 C 0.087 3.913 15 C -0.043 4.043 16 C -0.119 4.119 17 C -0.162 4.162 18 C 0.037 3.963 19 O -0.327 6.327 20 C 0.034 3.966 21 C 0.190 3.810 22 N -0.879 5.879 23 C -0.159 4.159 24 H 0.053 0.947 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.050 0.950 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.057 0.943 31 H 0.003 0.997 32 H 0.024 0.976 33 H 0.261 0.739 34 H 0.035 0.965 35 H 0.074 0.926 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.052 0.948 39 H 0.051 0.949 40 H 0.092 0.908 41 H 0.398 0.602 42 H 0.395 0.605 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.021 4.692 -18.044 19.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.203 4.203 3 C -0.064 4.064 4 N -0.250 5.250 5 C 0.064 3.936 6 C -0.541 4.541 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.540 5.540 10 Si 0.723 3.277 11 H -0.203 1.203 12 H -0.215 1.215 13 H -0.202 1.202 14 C -0.041 4.041 15 C -0.045 4.045 16 C -0.140 4.140 17 C -0.181 4.181 18 C -0.011 4.011 19 O -0.242 6.242 20 C -0.062 4.062 21 C 0.087 3.913 22 N -0.421 5.421 23 C -0.183 4.183 24 H 0.072 0.928 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.021 0.979 32 H 0.042 0.958 33 H 0.070 0.930 34 H 0.053 0.947 35 H 0.092 0.908 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.111 0.889 41 H 0.226 0.774 42 H 0.223 0.777 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.873 5.068 -17.965 19.291 hybrid contribution -0.503 -0.297 0.821 1.007 sum -5.375 4.771 -17.144 18.590 Atomic orbital electron populations 1.21648 0.96645 1.00539 1.01159 1.22182 0.95373 1.00621 1.02090 1.22074 0.88472 0.94269 1.01539 1.62359 1.06562 1.54723 1.01397 1.19797 0.94831 0.92938 0.86080 1.21111 1.37997 1.04983 0.90000 0.92025 1.24959 0.95482 0.95062 0.99036 1.69947 1.41650 1.18333 1.24072 0.86606 0.78718 0.80082 0.82268 1.20341 1.21450 1.20225 1.21038 1.00143 0.94035 0.88855 1.19616 0.93260 0.96245 0.95344 1.20625 1.00672 0.95921 0.96782 1.20947 0.96200 1.02214 0.98745 1.18351 0.95435 0.95191 0.92120 1.85903 1.46400 1.45317 1.46567 1.22910 0.93245 0.89656 1.00367 1.17038 0.86774 0.93840 0.93604 1.42225 1.19928 1.41693 1.38206 1.20383 0.98673 1.02189 0.97043 0.92769 0.93643 0.93701 0.93118 0.90553 0.90448 0.92488 0.97943 0.95783 0.92981 0.94669 0.90752 0.85956 0.85992 0.92948 0.93064 0.88929 0.77356 0.77726 0.85836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.91 37.16 0.37 -1.75 16 2 C -0.16 -2.94 5.18 -26.73 -0.14 -3.08 16 3 C 0.06 1.27 4.79 -3.82 -0.02 1.26 16 4 N -0.53 -11.32 4.69 -237.52 -1.11 -12.44 16 5 C 0.19 4.83 4.49 -4.98 -0.02 4.81 16 6 C -0.50 -14.02 8.40 -34.44 -0.29 -14.31 16 7 H 0.06 1.73 7.29 -52.48 -0.38 1.34 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -26.63 13.29 55.43 0.74 -25.89 16 10 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 C 0.09 1.59 4.93 -4.98 -0.02 1.57 16 15 C -0.04 -0.71 4.89 -104.62 -0.51 -1.22 16 16 C -0.12 -1.84 9.69 -39.56 -0.38 -2.23 16 17 C -0.16 -2.23 9.04 -39.47 -0.36 -2.59 16 18 C 0.04 0.51 6.70 -39.08 -0.26 0.25 16 19 O -0.33 -4.02 9.74 -19.80 -0.19 -4.21 16 20 C 0.03 0.29 9.81 101.05 0.99 1.28 16 21 C 0.19 2.66 6.77 -83.56 -0.57 2.09 16 22 N -0.88 -9.60 9.09 32.51 0.30 -9.30 16 23 C -0.16 -2.37 7.75 -39.41 -0.31 -2.68 16 24 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.85 5.71 -51.93 -0.30 0.56 16 28 H 0.08 1.62 6.35 -51.93 -0.33 1.29 16 29 H 0.08 1.68 6.94 -51.93 -0.36 1.32 16 30 H 0.06 1.04 5.92 -51.93 -0.31 0.73 16 31 H 0.00 0.08 6.04 -51.93 -0.31 -0.24 16 32 H 0.02 0.66 7.93 -51.93 -0.41 0.25 16 33 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.04 0.63 6.03 -51.93 -0.31 0.32 16 35 H 0.07 1.36 7.87 -51.93 -0.41 0.95 16 36 H 0.12 1.83 8.06 -52.48 -0.42 1.40 16 37 H 0.12 1.39 6.30 -52.49 -0.33 1.06 16 38 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 39 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 40 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.40 3.94 8.19 -40.82 -0.33 3.60 16 42 H 0.39 3.59 8.85 -40.82 -0.36 3.23 16 43 H 0.12 1.74 7.29 -52.48 -0.38 1.36 16 LS Contribution 340.46 15.07 5.13 5.13 Total: -1.00 -30.66 340.46 -8.36 -39.02 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -6.58 Total: 6.09 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: -1.61 Total: -15.12 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: -0.08 Total: -47.63 kcal Atomic # 8 Polarization: -4.02 SS G_CDS: -0.19 Total: -4.21 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.66 -8.36 -39.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140899864.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.888 kcal (2) G-P(sol) polarization free energy of solvation -30.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds