Wall clock time and date at job start Tue Mar 31 2020 01:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46947 * 2 1 4 4 N 1.46898 * 109.47125 * 181.10515 * 3 2 1 5 5 C 1.46902 * 111.00011 * 299.44008 * 4 3 2 6 6 C 1.50695 * 109.47301 * 294.06191 * 5 4 3 7 7 H 1.08004 * 120.00021 * 355.09144 * 6 5 4 8 8 C 1.37875 * 120.00181 * 175.09187 * 6 5 4 9 9 N 1.31515 * 119.99877 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 120.00152 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47220 * 60.00563 * 10 8 6 12 12 H 1.48507 * 109.47013 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47291 * 299.99847 * 10 8 6 14 14 C 1.46895 * 110.99921 * 63.39896 * 4 3 2 15 15 C 1.50701 * 109.47354 * 66.04511 * 14 4 3 16 16 C 1.38254 * 119.92095 * 90.00145 * 15 14 4 17 17 C 1.38277 * 120.18119 * 180.02562 * 16 15 14 18 18 C 1.38503 * 120.01771 * 359.97438 * 17 16 15 19 19 O 1.36018 * 120.08040 * 180.02562 * 18 17 16 20 20 C 1.42896 * 116.99869 * 359.97438 * 19 18 17 21 21 C 1.39311 * 119.84153 * 0.27452 * 18 17 16 22 22 N 1.39971 * 120.09164 * 179.72784 * 21 18 17 23 23 C 1.38224 * 119.92021 * 270.02037 * 15 14 4 24 24 H 1.08992 * 109.47634 * 299.99719 * 1 2 3 25 25 H 1.08994 * 109.46953 * 60.00333 * 1 2 3 26 26 H 1.09001 * 109.46407 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47464 * 240.00215 * 2 1 3 28 28 H 1.09002 * 109.47267 * 119.99789 * 2 1 3 29 29 H 1.08996 * 109.47037 * 61.10606 * 3 2 1 30 30 H 1.08997 * 109.47088 * 301.10970 * 3 2 1 31 31 H 1.09000 * 109.46902 * 54.06480 * 5 4 3 32 32 H 1.09001 * 109.46671 * 174.05957 * 5 4 3 33 33 H 0.97001 * 120.00293 * 180.02562 * 9 8 6 34 34 H 1.08996 * 109.47213 * 306.04000 * 14 4 3 35 35 H 1.09004 * 109.46941 * 186.04548 * 14 4 3 36 36 H 1.08005 * 119.91083 * 359.97438 * 16 15 14 37 37 H 1.08001 * 119.99401 * 179.97438 * 17 16 15 38 38 H 1.08994 * 109.47341 * 300.00239 * 20 19 18 39 39 H 1.08999 * 109.47050 * 60.00504 * 20 19 18 40 40 H 1.09000 * 109.47149 * 180.02562 * 20 19 18 41 41 H 0.96999 * 119.99929 * 0.02562 * 22 21 18 42 42 H 0.97003 * 119.99688 * 179.97438 * 22 21 18 43 43 H 1.08005 * 120.00250 * 0.02562 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5087 1.4427 -0.0267 5 6 4.0568 0.7610 1.1535 6 6 3.7184 1.5503 2.3918 7 1 3.2225 2.5058 2.3045 8 6 4.0419 1.0528 3.6363 9 7 4.6462 -0.1105 3.7427 10 14 3.6231 2.0315 5.1712 11 1 2.1545 2.2409 5.2394 12 1 4.0733 1.2841 6.3730 13 1 4.3092 3.3476 5.1217 14 6 4.0127 0.8366 -1.2662 15 6 3.6327 1.7025 -2.4396 16 6 4.4834 2.7087 -2.8582 17 6 4.1399 3.5069 -3.9339 18 6 2.9410 3.2993 -4.5957 19 8 2.6021 4.0833 -5.6543 20 6 3.5300 5.1031 -6.0296 21 6 2.0808 2.2890 -4.1713 22 7 0.8654 2.0784 -4.8328 23 6 2.4343 1.4892 -3.0945 24 1 -0.3634 0.5137 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6929 1.9506 0.8997 30 1 1.6605 1.9621 -0.8798 31 1 3.6253 -0.2371 1.2296 32 1 5.1397 0.6823 1.0573 33 1 4.8735 -0.4607 4.6182 34 1 3.5762 -0.1545 -1.3896 35 1 5.0982 0.7515 -1.2138 36 1 5.4185 2.8724 -2.3431 37 1 4.8065 4.2923 -4.2581 38 1 3.6761 5.7870 -5.1936 39 1 4.4831 4.6467 -6.2966 40 1 3.1383 5.6538 -6.8849 41 1 0.6212 2.6360 -5.5880 42 1 0.2676 1.3743 -4.5364 43 1 1.7713 0.7029 -2.7648 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140899864.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:57 Heat of formation + Delta-G solvation = -34.756992 kcal Electronic energy + Delta-G solvation = -22025.025442 eV Core-core repulsion = 18876.307108 eV Total energy + Delta-G solvation = -3148.718334 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.16305 -39.47332 -37.88452 -35.45121 -34.79629 -33.48766 -31.69986 -29.72727 -29.00527 -28.23863 -26.96526 -25.35070 -23.68700 -23.17981 -22.25500 -20.65863 -18.90035 -18.34661 -18.00025 -17.17580 -16.85509 -16.55579 -16.37588 -16.06142 -15.80670 -15.28012 -15.20763 -14.74953 -14.43009 -14.28718 -14.16426 -13.81061 -13.22396 -13.03858 -12.86561 -12.72661 -12.64667 -12.53521 -12.37396 -12.22717 -12.14828 -11.87099 -11.82955 -11.66974 -11.40776 -11.28838 -11.15613 -10.55902 -9.33769 -8.79168 -8.16736 -8.09144 -6.24739 0.51008 0.72796 1.41396 1.44202 1.51953 2.42532 2.46071 2.89368 3.09451 3.16529 3.61655 3.94729 3.99841 4.15813 4.20402 4.29169 4.47499 4.48985 4.52404 4.53358 4.55456 4.70109 4.76042 4.80074 4.83702 4.95365 5.04172 5.11749 5.15387 5.16883 5.22059 5.36251 5.46983 5.50890 5.55584 5.71316 5.87678 5.92809 6.12699 6.33574 6.44058 6.72050 6.79449 6.91967 7.10685 7.44282 8.94404 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022463 B = 0.004210 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.198287 B = 6649.289241 C = 7233.713889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.155 4.155 3 C 0.071 3.929 4 N -0.536 5.536 5 C 0.205 3.795 6 C -0.517 4.517 7 H 0.057 0.943 8 C 0.004 3.996 9 N -0.934 5.934 10 Si 0.963 3.037 11 H -0.269 1.269 12 H -0.283 1.283 13 H -0.270 1.270 14 C 0.093 3.907 15 C -0.060 4.060 16 C -0.135 4.135 17 C -0.160 4.160 18 C 0.035 3.965 19 O -0.334 6.334 20 C 0.023 3.977 21 C 0.188 3.812 22 N -0.867 5.867 23 C -0.165 4.165 24 H 0.046 0.954 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.035 0.965 29 H 0.052 0.948 30 H 0.077 0.923 31 H -0.019 1.019 32 H -0.004 1.004 33 H 0.263 0.737 34 H 0.037 0.963 35 H 0.065 0.935 36 H 0.118 0.882 37 H 0.145 0.855 38 H 0.055 0.945 39 H 0.059 0.941 40 H 0.119 0.881 41 H 0.406 0.594 42 H 0.405 0.595 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.508 6.057 -19.592 21.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.194 4.194 3 C -0.057 4.057 4 N -0.259 5.259 5 C 0.079 3.921 6 C -0.555 4.555 7 H 0.075 0.925 8 C -0.193 4.193 9 N -0.575 5.575 10 Si 0.788 3.212 11 H -0.194 1.194 12 H -0.208 1.208 13 H -0.195 1.195 14 C -0.035 4.035 15 C -0.061 4.061 16 C -0.156 4.156 17 C -0.179 4.179 18 C -0.014 4.014 19 O -0.248 6.248 20 C -0.071 4.071 21 C 0.083 3.917 22 N -0.409 5.409 23 C -0.189 4.189 24 H 0.065 0.935 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.095 0.905 31 H -0.001 1.001 32 H 0.014 0.986 33 H 0.072 0.928 34 H 0.055 0.945 35 H 0.083 0.917 36 H 0.136 0.864 37 H 0.163 0.837 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.137 0.863 41 H 0.235 0.765 42 H 0.235 0.765 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.390 6.442 -19.550 21.553 hybrid contribution -0.036 -0.670 1.139 1.322 sum -6.426 5.772 -18.411 20.337 Atomic orbital electron populations 1.21603 0.93866 1.01872 1.02010 1.22044 0.97772 0.98923 1.00625 1.22014 0.87260 0.95326 1.01090 1.62241 1.07870 1.54544 1.01252 1.19425 0.93033 0.92057 0.87616 1.21383 1.37922 1.04973 0.91226 0.92482 1.25816 0.95190 0.96027 1.02301 1.70073 1.42596 1.19883 1.24918 0.85538 0.78848 0.78647 0.78200 1.19382 1.20846 1.19539 1.20978 0.99530 0.94632 0.88337 1.19418 0.94599 0.96885 0.95207 1.20686 1.00692 0.96444 0.97771 1.21138 0.96642 1.02241 0.97923 1.18516 0.95245 0.95238 0.92374 1.85904 1.47505 1.45753 1.45670 1.23219 0.93386 0.89045 1.01458 1.17126 0.87697 0.93504 0.93323 1.42193 1.18961 1.41844 1.37886 1.20367 0.98247 1.02737 0.97511 0.93483 0.91185 0.92172 0.91958 0.94574 0.92986 0.90461 1.00093 0.98577 0.92825 0.94455 0.91670 0.86382 0.83727 0.92595 0.92212 0.86330 0.76532 0.76534 0.85191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.84 9.91 71.98 0.71 -3.13 16 2 C -0.15 -5.59 5.18 30.60 0.16 -5.43 16 3 C 0.07 2.82 4.79 86.31 0.41 3.23 16 4 N -0.54 -23.77 4.69 -905.38 -4.25 -28.02 16 5 C 0.20 11.03 4.49 85.55 0.38 11.42 16 6 C -0.52 -29.75 8.40 25.60 0.22 -29.54 16 7 H 0.06 3.27 7.29 -2.91 -0.02 3.25 16 8 C 0.00 0.26 5.46 84.65 0.46 0.72 16 9 N -0.93 -56.73 13.29 21.45 0.28 -56.44 16 10 Si 0.96 45.04 29.54 68.60 2.03 47.07 16 11 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 12 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 13 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 14 C 0.09 3.49 4.93 85.56 0.42 3.91 16 15 C -0.06 -1.93 4.89 -19.86 -0.10 -2.03 16 16 C -0.14 -4.12 9.69 22.28 0.22 -3.90 16 17 C -0.16 -4.15 9.04 22.34 0.20 -3.95 16 18 C 0.03 0.89 6.70 22.59 0.15 1.04 16 19 O -0.33 -7.25 9.74 -93.76 -0.91 -8.16 16 20 C 0.02 0.33 9.81 113.37 1.11 1.44 16 21 C 0.19 4.83 6.77 38.22 0.26 5.09 16 22 N -0.87 -16.52 9.09 -51.05 -0.46 -16.98 16 23 C -0.16 -4.67 7.75 22.38 0.17 -4.50 16 24 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.06 2.08 5.71 -2.39 -0.01 2.07 16 28 H 0.04 1.59 6.35 -2.39 -0.02 1.57 16 29 H 0.05 2.31 6.94 -2.39 -0.02 2.29 16 30 H 0.08 2.75 5.92 -2.39 -0.01 2.74 16 31 H -0.02 -1.07 6.04 -2.39 -0.01 -1.08 16 32 H 0.00 -0.22 7.93 -2.39 -0.02 -0.24 16 33 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 34 H 0.04 1.37 6.03 -2.39 -0.01 1.35 16 35 H 0.06 2.51 7.87 -2.39 -0.02 2.49 16 36 H 0.12 3.59 8.06 -2.91 -0.02 3.56 16 37 H 0.15 2.96 6.30 -2.91 -0.02 2.94 16 38 H 0.06 0.77 7.66 -2.39 -0.02 0.75 16 39 H 0.06 0.76 7.66 -2.39 -0.02 0.74 16 40 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.41 6.82 8.19 -92.71 -0.76 6.06 16 42 H 0.41 6.16 8.85 -92.71 -0.82 5.34 16 43 H 0.13 3.42 7.29 -2.91 -0.02 3.40 16 Total: -1.00 -67.16 340.46 0.91 -66.25 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: -0.55 Total: 21.90 kcal Atomic # 6 Polarization: -30.40 SS G_CDS: 4.78 Total: -25.62 kcal Atomic # 7 Polarization: -97.01 SS G_CDS: -4.43 Total: -101.44 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: -0.91 Total: -8.16 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -67.16 0.91 -66.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140899864.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.493 kcal (2) G-P(sol) polarization free energy of solvation -67.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds