Wall clock time and date at job start Tue Mar 31 2020 00:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.46830 * 2 1 4 4 C 1.53001 * 109.46830 * 179.97438 * 3 2 1 5 5 N 1.46908 * 109.47025 * 179.30576 * 4 3 2 6 6 C 1.46895 * 110.99887 * 287.82114 * 5 4 3 7 7 C 1.50700 * 109.47324 * 298.75326 * 6 5 4 8 8 H 1.07995 * 119.99650 * 4.61921 * 7 6 5 9 9 C 1.37880 * 120.00090 * 184.62002 * 7 6 5 10 10 N 1.31519 * 119.99738 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 119.99940 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47249 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.47353 * 120.00287 * 11 9 7 14 14 H 1.48509 * 109.47015 * 239.99889 * 11 9 7 15 15 C 1.46897 * 110.99832 * 163.86651 * 5 4 3 16 16 C 1.50699 * 109.47071 * 189.99968 * 15 5 4 17 17 C 1.38252 * 119.55795 * 94.99945 * 16 15 5 18 18 C 1.38534 * 119.22702 * 180.02562 * 17 16 15 19 19 C 1.39143 * 118.36974 * 0.28106 * 18 17 16 20 20 O 1.35911 * 120.47275 * 179.70070 * 19 18 17 21 21 C 1.42898 * 116.99952 * 180.02562 * 20 19 18 22 22 C 1.38703 * 119.05183 * 359.45318 * 19 18 17 23 23 N 1.31842 * 120.68352 * 0.55699 * 22 19 18 24 24 H 1.09004 * 109.47461 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47552 * 299.99813 * 1 2 3 26 26 H 1.09000 * 109.47181 * 60.00146 * 1 2 3 27 27 H 1.09004 * 109.46829 * 240.00336 * 2 1 3 28 28 H 1.08995 * 109.47086 * 120.00323 * 2 1 3 29 29 H 1.09004 * 109.47140 * 60.00527 * 3 2 1 30 30 H 1.08995 * 109.47550 * 300.00039 * 3 2 1 31 31 H 1.08990 * 109.47198 * 59.30817 * 4 3 2 32 32 H 1.09003 * 109.47290 * 299.30223 * 4 3 2 33 33 H 1.08997 * 109.46976 * 58.75681 * 6 5 4 34 34 H 1.09005 * 109.47096 * 178.75135 * 6 5 4 35 35 H 0.97002 * 119.99596 * 179.97438 * 10 9 7 36 36 H 1.09004 * 109.46985 * 69.99991 * 15 5 4 37 37 H 1.08998 * 109.47562 * 309.99819 * 15 5 4 38 38 H 1.08004 * 120.38831 * 0.05193 * 17 16 15 39 39 H 1.07997 * 120.81906 * 180.02562 * 18 17 16 40 40 H 1.09003 * 109.47108 * 299.99631 * 21 20 19 41 41 H 1.08997 * 109.47206 * 59.99960 * 21 20 19 42 42 H 1.09007 * 109.47105 * 180.02562 * 21 20 19 43 43 H 1.08007 * 119.65969 * 180.24957 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 7 4.0596 2.8274 -0.0161 6 6 3.8399 3.4476 -1.3295 7 6 4.5997 2.6803 -2.3808 8 1 5.1261 1.7758 -2.1142 9 6 4.6228 3.1332 -3.6829 10 7 3.9813 4.2344 -4.0075 11 14 5.5640 2.1817 -4.9860 12 1 6.1941 0.9873 -4.3684 13 1 4.6292 1.7511 -6.0564 14 1 6.6176 3.0509 -5.5692 15 6 5.4770 2.8893 0.3648 16 6 5.8783 4.3265 0.5754 17 6 5.8505 4.8628 1.8493 18 6 6.2203 6.1849 2.0350 19 6 6.6021 6.9271 0.9217 20 8 6.9672 8.2296 1.0539 21 6 7.3451 8.9216 -0.1379 22 6 6.6098 6.3174 -0.3241 23 7 6.2506 5.0559 -0.4579 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.6766 1.9563 0.8901 30 1 1.6766 1.9563 -0.8899 31 1 3.9336 0.9179 -0.8828 32 1 3.9329 0.9396 0.8971 33 1 2.7759 3.4312 -1.5656 34 1 4.1913 4.4792 -1.3076 35 1 3.9978 4.5532 -4.9235 36 1 6.0856 2.4545 -0.4281 37 1 5.6298 2.3305 1.2881 38 1 5.5444 4.2579 2.6902 39 1 6.2085 6.6298 3.0190 40 1 8.2009 8.4222 -0.5921 41 1 6.5101 8.9211 -0.8385 42 1 7.6130 9.9492 0.1080 43 1 6.9084 6.8832 -1.1943 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144423583.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:27 Heat of formation + Delta-G solvation = -6.544424 kcal Electronic energy + Delta-G solvation = -21958.570695 eV Core-core repulsion = 18811.075749 eV Total energy + Delta-G solvation = -3147.494946 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.27768 -38.15185 -36.81032 -34.17012 -32.32495 -31.98678 -30.71465 -28.31020 -27.46362 -26.78570 -24.68638 -23.18033 -22.85529 -21.73800 -20.50588 -19.48568 -17.89083 -16.68654 -16.36164 -15.70227 -15.43385 -15.09651 -14.64373 -14.50698 -14.08757 -13.91585 -13.58222 -13.36836 -12.93162 -12.60005 -12.46313 -12.17624 -12.01149 -11.81797 -11.62644 -11.24194 -11.11844 -10.90471 -10.80661 -10.68754 -10.47132 -10.39212 -10.09915 -9.86077 -9.80239 -9.42917 -9.27246 -8.73094 -8.24538 -7.99013 -7.08038 -5.87244 -3.91836 1.55147 1.72658 3.34124 3.35426 3.41847 3.44781 4.19989 4.52791 4.86110 4.97579 5.05079 5.16100 5.21574 5.27512 5.39520 5.43425 5.45537 5.50064 5.56815 5.63149 5.75983 5.90833 5.94652 6.04915 6.15913 6.20036 6.23375 6.29847 6.38647 6.47579 6.53904 6.57623 6.75950 6.91655 6.95003 7.00471 7.39771 7.44918 7.71759 8.06160 8.14909 8.39333 8.43813 8.63851 9.14551 9.71702 11.19121 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.012423 B = 0.005862 C = 0.004349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.337221 B = 4775.728046 C = 6437.200548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.109 4.109 4 C 0.060 3.940 5 N -0.539 5.539 6 C 0.184 3.816 7 C -0.528 4.528 8 H 0.053 0.947 9 C 0.068 3.932 10 N -0.890 5.890 11 Si 0.882 3.118 12 H -0.276 1.276 13 H -0.287 1.287 14 H -0.286 1.286 15 C 0.109 3.891 16 C 0.121 3.879 17 C -0.125 4.125 18 C -0.116 4.116 19 C 0.057 3.943 20 O -0.319 6.319 21 C 0.026 3.974 22 C 0.025 3.975 23 N -0.407 5.407 24 H 0.046 0.954 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.024 0.976 34 H 0.046 0.954 35 H 0.257 0.743 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.055 0.945 41 H 0.058 0.942 42 H 0.097 0.903 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.508 1.887 10.804 11.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.147 4.147 4 C -0.068 4.068 5 N -0.263 5.263 6 C 0.059 3.941 7 C -0.567 4.567 8 H 0.071 0.929 9 C -0.133 4.133 10 N -0.530 5.530 11 Si 0.711 3.289 12 H -0.201 1.201 13 H -0.213 1.213 14 H -0.212 1.212 15 C -0.019 4.019 16 C -0.018 4.018 17 C -0.145 4.145 18 C -0.142 4.142 19 C 0.010 3.990 20 O -0.232 6.232 21 C -0.070 4.070 22 C -0.135 4.135 23 N -0.116 5.116 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.042 0.958 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.154 0.846 39 H 0.152 0.848 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.116 0.884 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.220 2.022 10.348 10.775 hybrid contribution 1.001 -0.363 -1.032 1.483 sum 3.222 1.660 9.316 9.996 Atomic orbital electron populations 1.21753 0.96476 1.00733 1.01708 1.21480 0.95271 0.97854 1.01367 1.21500 0.95659 0.95218 1.02313 1.21947 0.94788 0.90437 0.99657 1.62588 1.14083 1.16474 1.33185 1.19846 0.96257 0.95956 0.82068 1.21575 1.31713 1.09355 0.94033 0.92921 1.24838 0.95355 0.94781 0.98342 1.69961 1.42838 1.21826 1.18360 0.86704 0.79926 0.80096 0.82186 1.20059 1.21308 1.21200 1.20752 0.91831 0.89485 0.99866 1.21167 0.95704 0.96941 0.87961 1.21790 0.99466 0.94508 0.98752 1.20762 1.02112 0.93794 0.97569 1.20088 0.98864 0.84463 0.95617 1.85997 1.81728 1.21131 1.34309 1.23050 1.00130 0.96773 0.86998 1.22961 1.02363 0.92990 0.95139 1.67646 1.06075 1.04864 1.33041 0.93469 0.93096 0.92726 0.92193 0.92780 0.92508 0.91330 0.93376 0.93467 0.95831 0.93566 0.93324 0.92017 0.91659 0.84610 0.84810 0.92617 0.92309 0.88442 0.83193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.91 37.16 0.37 -1.54 16 2 C -0.12 -1.76 5.93 -26.73 -0.16 -1.92 16 3 C -0.11 -1.90 5.28 -26.73 -0.14 -2.04 16 4 C 0.06 1.14 4.81 -3.82 -0.02 1.12 16 5 N -0.54 -11.51 4.66 -237.52 -1.11 -12.61 16 6 C 0.18 4.77 4.71 -4.98 -0.02 4.75 16 7 C -0.53 -14.52 7.33 -34.44 -0.25 -14.77 16 8 H 0.05 1.45 5.95 -52.49 -0.31 1.14 16 9 C 0.07 1.95 5.46 -17.82 -0.10 1.86 16 10 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 11 Si 0.88 21.97 29.54 -169.99 -5.02 16.95 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 14 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 15 C 0.11 2.15 5.09 -4.98 -0.03 2.12 16 16 C 0.12 2.35 5.70 -82.58 -0.47 1.88 16 17 C -0.12 -1.99 9.71 -39.47 -0.38 -2.37 16 18 C -0.12 -1.75 10.13 -39.14 -0.40 -2.15 16 19 C 0.06 0.92 6.71 -39.07 -0.26 0.66 16 20 O -0.32 -4.56 10.51 -19.46 -0.20 -4.76 16 21 C 0.03 0.27 9.82 101.05 0.99 1.27 16 22 C 0.02 0.45 10.22 -17.38 -0.18 0.27 16 23 N -0.41 -8.75 8.77 -9.35 -0.08 -8.83 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 1.38 6.73 -51.93 -0.35 1.03 16 31 H 0.05 1.02 6.17 -51.93 -0.32 0.70 16 32 H 0.05 0.78 7.81 -51.93 -0.41 0.38 16 33 H 0.02 0.66 6.65 -51.93 -0.35 0.32 16 34 H 0.05 1.32 6.19 -51.93 -0.32 1.00 16 35 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.06 1.37 6.57 -51.93 -0.34 1.02 16 37 H 0.07 1.06 7.76 -51.93 -0.40 0.66 16 38 H 0.14 1.78 8.06 -52.48 -0.42 1.35 16 39 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 40 H 0.06 0.55 7.67 -51.93 -0.40 0.16 16 41 H 0.06 0.64 7.69 -51.93 -0.40 0.24 16 42 H 0.10 0.77 8.14 -51.92 -0.42 0.34 16 43 H 0.15 2.49 6.32 -52.48 -0.33 2.16 16 LS Contribution 345.80 15.07 5.21 5.21 Total: -1.00 -31.56 345.80 -8.38 -39.94 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -6.87 Total: 0.79 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: -1.05 Total: -10.85 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: -0.45 Total: -47.28 kcal Atomic # 8 Polarization: -4.56 SS G_CDS: -0.20 Total: -4.76 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.56 -8.38 -39.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144423583.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.393 kcal (2) G-P(sol) polarization free energy of solvation -31.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds