Wall clock time and date at job start Tue Mar 31 2020 00:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99900 * 2 1 3 5 5 O 1.42895 * 109.47036 * 239.99739 * 2 1 3 6 6 C 1.35678 * 116.99784 * 60.00534 * 5 2 1 7 7 C 1.38781 * 119.63607 * 179.72728 * 6 5 2 8 8 C 1.38592 * 119.27300 * 179.73101 * 7 6 5 9 9 C 1.38497 * 118.56779 * 0.52921 * 8 7 6 10 10 C 1.38981 * 119.22296 * 359.73021 * 9 8 7 11 11 N 1.38999 * 119.67006 * 179.97438 * 10 9 8 12 12 C 1.46499 * 120.00007 * 0.02562 * 11 10 9 13 13 C 1.53000 * 109.46847 * 179.97438 * 12 11 10 14 14 C 1.52998 * 109.46716 * 180.02562 * 13 12 11 15 15 C 1.50705 * 109.47053 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99913 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00073 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99701 * 179.97438 * 17 15 14 19 19 Si 1.86793 * 120.00019 * 359.97438 * 17 15 14 20 20 H 1.48495 * 109.47306 * 89.99917 * 19 17 15 21 21 H 1.48503 * 109.47344 * 210.00089 * 19 17 15 22 22 H 1.48498 * 109.47266 * 330.00051 * 19 17 15 23 23 N 1.32316 * 119.63894 * 359.97438 * 6 5 2 24 24 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 25 25 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 27 27 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 28 28 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 30 30 H 1.09001 * 109.47362 * 60.00551 * 4 2 1 31 31 H 1.09002 * 109.46716 * 179.97438 * 4 2 1 32 32 H 1.09000 * 109.47486 * 299.99829 * 4 2 1 33 33 H 1.07997 * 120.36435 * 359.97438 * 7 6 5 34 34 H 1.08000 * 120.71395 * 180.26672 * 8 7 6 35 35 H 1.08003 * 120.39231 * 179.75411 * 9 8 7 36 36 H 0.97005 * 119.99740 * 180.02562 * 11 10 9 37 37 H 1.08994 * 109.47041 * 299.99954 * 12 11 10 38 38 H 1.09000 * 109.46798 * 60.00270 * 12 11 10 39 39 H 1.08994 * 109.47275 * 299.99827 * 13 12 11 40 40 H 1.09000 * 109.47188 * 60.00525 * 13 12 11 41 41 H 1.09000 * 109.47521 * 299.99881 * 14 13 12 42 42 H 1.09002 * 109.47376 * 60.00202 * 14 13 12 43 43 H 0.97005 * 119.99534 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 2.0064 -0.6737 -1.1667 6 6 1.6419 -0.1581 -2.3676 7 6 2.0785 -0.7657 -3.5364 8 6 1.6971 -0.2360 -4.7590 9 6 0.8975 0.8948 -4.7703 10 6 0.5000 1.4569 -3.5630 11 7 -0.3021 2.5921 -3.5636 12 6 -0.7246 3.1898 -4.8326 13 6 -1.5931 4.4181 -4.5536 14 6 -2.0349 5.0420 -5.8789 15 6 -2.8899 6.2522 -5.6041 16 1 -3.0970 6.5472 -4.5860 17 6 -3.4076 6.9830 -6.6525 18 7 -4.1541 8.0388 -6.4126 19 14 -3.0488 6.4733 -8.4133 20 1 -4.0967 5.5298 -8.8789 21 1 -3.0424 7.6754 -9.2852 22 1 -1.7219 5.8094 -8.4759 23 7 0.8780 0.9215 -2.4115 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 -1.7489 1.2493 31 1 3.1300 -0.7217 1.2491 32 1 1.6766 -0.2074 2.1393 33 1 2.7055 -1.6441 -3.4937 34 1 2.0199 -0.6927 -5.6829 35 1 0.5862 1.3345 -5.7064 36 1 -0.5820 2.9886 -2.7237 37 1 0.1542 3.4880 -5.4042 38 1 -1.2995 2.4610 -5.4039 39 1 -2.4719 4.1195 -3.9822 40 1 -1.0186 5.1472 -3.9821 41 1 -1.1563 5.3406 -6.4507 42 1 -2.6096 4.3128 -6.4500 43 1 -4.5181 8.5531 -7.1502 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157641121.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:55 Heat of formation + Delta-G solvation = -8.990564 kcal Electronic energy + Delta-G solvation = -21363.738628 eV Core-core repulsion = 18216.137610 eV Total energy + Delta-G solvation = -3147.601018 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.87754 -38.80821 -36.29613 -34.23143 -33.43675 -32.40447 -31.46089 -28.99889 -27.50806 -27.40882 -26.81389 -23.87459 -23.19639 -21.83267 -20.59476 -20.19253 -17.77558 -17.20620 -16.70281 -15.97309 -15.68316 -15.34953 -15.10812 -15.08281 -14.33871 -14.27259 -13.90966 -13.83180 -12.97578 -12.91270 -12.72046 -12.63984 -12.21944 -12.13879 -12.11963 -12.01159 -11.87705 -11.68921 -11.09331 -11.03013 -10.97331 -10.76125 -10.19951 -10.05692 -9.88794 -9.76759 -9.31355 -9.27447 -9.03326 -8.59924 -7.53180 -6.10063 -4.09151 1.40308 1.50046 2.93805 3.26394 3.27264 3.34715 3.36799 3.92380 4.39748 4.56321 4.70499 4.77852 4.87737 4.99661 5.16064 5.23562 5.30830 5.35147 5.38779 5.44507 5.49586 5.52534 5.60689 5.64812 5.73603 5.82096 5.87507 5.89617 5.99089 6.25908 6.27837 6.35691 6.36183 6.37005 6.48050 6.70462 7.11133 7.16384 7.26328 7.29647 7.68864 7.73736 8.15774 8.46488 8.94097 9.51614 11.03293 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028544 B = 0.003134 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.692861 B = 8932.811710 C = 9706.535004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.120 3.880 3 C -0.182 4.182 4 C -0.140 4.140 5 O -0.302 6.302 6 C 0.372 3.628 7 C -0.264 4.264 8 C -0.002 4.002 9 C -0.278 4.278 10 C 0.439 3.561 11 N -0.717 5.717 12 C 0.122 3.878 13 C -0.113 4.113 14 C -0.010 4.010 15 C -0.523 4.523 16 H 0.072 0.928 17 C 0.066 3.934 18 N -0.902 5.902 19 Si 0.881 3.119 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.265 1.265 23 N -0.591 5.591 24 H 0.095 0.905 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.094 0.906 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.131 0.869 34 H 0.135 0.865 35 H 0.133 0.867 36 H 0.403 0.597 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.018 0.982 42 H 0.014 0.986 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.161 -18.569 9.692 24.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.083 3.917 3 C -0.239 4.239 4 C -0.197 4.197 5 O -0.210 6.210 6 C 0.193 3.807 7 C -0.288 4.288 8 C -0.027 4.027 9 C -0.303 4.303 10 C 0.202 3.798 11 N -0.347 5.347 12 C -0.002 4.002 13 C -0.151 4.151 14 C -0.047 4.047 15 C -0.561 4.561 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.541 5.541 19 Si 0.708 3.292 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.189 1.189 23 N -0.325 5.325 24 H 0.113 0.887 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.113 0.887 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.149 0.851 34 H 0.153 0.847 35 H 0.151 0.849 36 H 0.239 0.761 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.037 0.963 42 H 0.032 0.968 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 12.891 -18.183 10.242 24.530 hybrid contribution 0.092 -0.172 -1.247 1.263 sum 12.983 -18.355 8.995 24.215 Atomic orbital electron populations 1.22570 0.94340 1.02364 1.04669 1.21654 0.94491 0.92505 0.83056 1.22568 1.00897 0.95811 1.04665 1.21840 1.01899 1.00888 0.95098 1.86288 1.70078 1.52790 1.11874 1.19313 0.88313 0.87496 0.85600 1.20650 1.11606 1.06379 0.90133 1.21051 0.91871 0.92683 0.97141 1.21277 1.09195 1.01972 0.97864 1.18071 0.87157 0.86275 0.88269 1.44859 1.52876 1.27047 1.09895 1.21726 0.98443 0.95791 0.84205 1.21682 0.98092 0.94203 1.01108 1.19495 0.96558 0.96259 0.92433 1.21093 1.30354 1.09555 0.95131 0.91010 1.25039 0.94540 0.94677 0.99250 1.69913 1.34261 1.17814 1.32111 0.86763 0.79403 0.78191 0.84836 1.20246 1.21355 1.18945 1.66862 1.21909 1.15244 1.28509 0.88689 0.92870 0.91831 0.91827 0.92868 0.88697 0.91817 0.91816 0.90556 0.85072 0.84706 0.84931 0.76115 0.92048 0.92061 0.92009 0.91982 0.96337 0.96769 0.92654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.97 8.35 37.16 0.31 -1.66 16 2 C 0.12 1.30 1.11 -90.62 -0.10 1.20 16 3 C -0.18 -1.97 8.35 37.16 0.31 -1.66 16 4 C -0.14 -1.16 8.84 37.16 0.33 -0.83 16 5 O -0.30 -3.84 9.77 -18.74 -0.18 -4.02 16 6 C 0.37 4.95 6.77 -17.14 -0.12 4.83 16 7 C -0.26 -3.13 10.04 -39.25 -0.39 -3.52 16 8 C 0.00 -0.02 10.16 -39.36 -0.40 -0.42 16 9 C -0.28 -3.52 9.32 -39.21 -0.37 -3.88 16 10 C 0.44 6.08 7.65 -155.00 -1.19 4.89 16 11 N -0.72 -9.83 5.73 -60.44 -0.35 -10.18 16 12 C 0.12 1.79 4.89 -4.04 -0.02 1.77 16 13 C -0.11 -2.03 5.27 -26.73 -0.14 -2.17 16 14 C -0.01 -0.21 4.04 -27.88 -0.11 -0.33 16 15 C -0.52 -14.50 9.66 -34.44 -0.33 -14.83 16 16 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 17 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 18 N -0.90 -27.47 13.96 55.43 0.77 -26.70 16 19 Si 0.88 21.17 27.47 -169.99 -4.67 16.50 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.26 -6.04 6.54 56.52 0.37 -5.67 16 23 N -0.59 -8.06 4.60 -12.51 -0.06 -8.12 16 24 H 0.09 1.21 5.57 -51.93 -0.29 0.92 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.09 1.21 5.58 -51.93 -0.29 0.92 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 34 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.13 1.57 6.69 -52.48 -0.35 1.22 16 36 H 0.40 5.32 8.60 -40.82 -0.35 4.97 16 37 H 0.06 0.88 7.92 -51.93 -0.41 0.47 16 38 H 0.06 0.88 7.92 -51.93 -0.41 0.46 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 42 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 43 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 LS Contribution 344.93 15.07 5.20 5.20 Total: -1.00 -30.08 344.93 -8.71 -38.79 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -7.11 Total: 3.36 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: -2.31 Total: -14.82 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: 0.37 Total: -45.00 kcal Atomic # 8 Polarization: -3.84 SS G_CDS: -0.18 Total: -4.02 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.67 Total: 16.50 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.08 -8.71 -38.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157641121.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.800 kcal (2) G-P(sol) polarization free energy of solvation -30.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds