Wall clock time and date at job start Tue Mar 31 2020 00:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99900 * 2 1 3 5 5 O 1.42895 * 109.47036 * 239.99739 * 2 1 3 6 6 C 1.35678 * 116.99784 * 60.00534 * 5 2 1 7 7 C 1.38781 * 119.63607 * 179.72728 * 6 5 2 8 8 C 1.38592 * 119.27300 * 179.73101 * 7 6 5 9 9 C 1.38497 * 118.56779 * 0.52921 * 8 7 6 10 10 C 1.38981 * 119.22296 * 359.73021 * 9 8 7 11 11 N 1.38999 * 119.67006 * 179.97438 * 10 9 8 12 12 C 1.46499 * 120.00007 * 0.02562 * 11 10 9 13 13 C 1.53000 * 109.46847 * 179.97438 * 12 11 10 14 14 C 1.52998 * 109.46716 * 180.02562 * 13 12 11 15 15 C 1.50705 * 109.47053 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99913 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00073 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99701 * 179.97438 * 17 15 14 19 19 Si 1.86793 * 120.00019 * 359.97438 * 17 15 14 20 20 H 1.48495 * 109.47306 * 89.99917 * 19 17 15 21 21 H 1.48503 * 109.47344 * 210.00089 * 19 17 15 22 22 H 1.48498 * 109.47266 * 330.00051 * 19 17 15 23 23 N 1.32316 * 119.63894 * 359.97438 * 6 5 2 24 24 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 25 25 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 27 27 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 28 28 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 30 30 H 1.09001 * 109.47362 * 60.00551 * 4 2 1 31 31 H 1.09002 * 109.46716 * 179.97438 * 4 2 1 32 32 H 1.09000 * 109.47486 * 299.99829 * 4 2 1 33 33 H 1.07997 * 120.36435 * 359.97438 * 7 6 5 34 34 H 1.08000 * 120.71395 * 180.26672 * 8 7 6 35 35 H 1.08003 * 120.39231 * 179.75411 * 9 8 7 36 36 H 0.97005 * 119.99740 * 180.02562 * 11 10 9 37 37 H 1.08994 * 109.47041 * 299.99954 * 12 11 10 38 38 H 1.09000 * 109.46798 * 60.00270 * 12 11 10 39 39 H 1.08994 * 109.47275 * 299.99827 * 13 12 11 40 40 H 1.09000 * 109.47188 * 60.00525 * 13 12 11 41 41 H 1.09000 * 109.47521 * 299.99881 * 14 13 12 42 42 H 1.09002 * 109.47376 * 60.00202 * 14 13 12 43 43 H 0.97005 * 119.99534 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 2.0064 -0.6737 -1.1667 6 6 1.6419 -0.1581 -2.3676 7 6 2.0785 -0.7657 -3.5364 8 6 1.6971 -0.2360 -4.7590 9 6 0.8975 0.8948 -4.7703 10 6 0.5000 1.4569 -3.5630 11 7 -0.3021 2.5921 -3.5636 12 6 -0.7246 3.1898 -4.8326 13 6 -1.5931 4.4181 -4.5536 14 6 -2.0349 5.0420 -5.8789 15 6 -2.8899 6.2522 -5.6041 16 1 -3.0970 6.5472 -4.5860 17 6 -3.4076 6.9830 -6.6525 18 7 -4.1541 8.0388 -6.4126 19 14 -3.0488 6.4733 -8.4133 20 1 -4.0967 5.5298 -8.8789 21 1 -3.0424 7.6754 -9.2852 22 1 -1.7219 5.8094 -8.4759 23 7 0.8780 0.9215 -2.4115 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 -1.7489 1.2493 31 1 3.1300 -0.7217 1.2491 32 1 1.6766 -0.2074 2.1393 33 1 2.7055 -1.6441 -3.4937 34 1 2.0199 -0.6927 -5.6829 35 1 0.5862 1.3345 -5.7064 36 1 -0.5820 2.9886 -2.7237 37 1 0.1542 3.4880 -5.4042 38 1 -1.2995 2.4610 -5.4039 39 1 -2.4719 4.1195 -3.9822 40 1 -1.0186 5.1472 -3.9821 41 1 -1.1563 5.3406 -6.4507 42 1 -2.6096 4.3128 -6.4500 43 1 -4.5181 8.5531 -7.1502 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157641121.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:54 Heat of formation + Delta-G solvation = -26.138091 kcal Electronic energy + Delta-G solvation = -21364.482201 eV Core-core repulsion = 18216.137610 eV Total energy + Delta-G solvation = -3148.344591 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.79761 -39.73683 -37.48202 -35.54055 -34.76765 -33.64148 -32.94193 -30.17618 -28.35930 -28.26418 -28.20193 -25.06274 -24.44388 -22.90821 -22.08247 -21.23422 -18.96054 -18.73660 -17.99913 -16.88333 -16.65578 -16.50625 -16.28578 -16.21530 -15.91475 -15.26036 -15.02602 -14.79122 -14.68732 -14.11402 -13.85415 -13.68969 -13.32470 -13.29456 -13.02386 -12.94054 -12.91575 -12.71684 -12.54540 -12.51440 -11.89429 -11.82768 -11.72047 -11.66565 -11.50954 -11.32132 -10.99577 -10.75490 -10.24320 -10.01272 -8.52321 -8.28537 -6.33435 0.47513 0.56304 1.39128 1.41029 1.52731 2.01772 2.28927 2.38040 2.97504 3.07476 3.66262 3.91411 3.96126 4.06946 4.09845 4.15167 4.22548 4.24242 4.46714 4.49041 4.61344 4.65755 4.68780 4.83292 4.87898 4.90921 4.91953 4.96528 4.97217 5.02766 5.10733 5.18872 5.40043 5.43759 5.46414 5.48529 5.52789 5.57590 5.66194 6.09433 6.28646 6.31769 6.70253 6.75595 7.16974 7.31464 8.88401 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028544 B = 0.003134 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.692861 B = 8932.811710 C = 9706.535004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.113 3.887 3 C -0.178 4.178 4 C -0.136 4.136 5 O -0.311 6.311 6 C 0.352 3.648 7 C -0.266 4.266 8 C 0.004 3.996 9 C -0.287 4.287 10 C 0.419 3.581 11 N -0.720 5.720 12 C 0.138 3.862 13 C -0.103 4.103 14 C -0.008 4.008 15 C -0.535 4.535 16 H 0.029 0.971 17 C 0.000 4.000 18 N -0.955 5.955 19 Si 0.954 3.046 20 H -0.266 1.266 21 H -0.288 1.288 22 H -0.239 1.239 23 N -0.597 5.597 24 H 0.074 0.926 25 H 0.052 0.948 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.052 0.948 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.149 0.851 34 H 0.169 0.831 35 H 0.142 0.858 36 H 0.403 0.597 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.027 0.973 42 H 0.026 0.974 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.737 -20.801 8.624 26.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.076 3.924 3 C -0.236 4.236 4 C -0.193 4.193 5 O -0.219 6.219 6 C 0.173 3.827 7 C -0.289 4.289 8 C -0.021 4.021 9 C -0.312 4.312 10 C 0.184 3.816 11 N -0.351 5.351 12 C 0.014 3.986 13 C -0.141 4.141 14 C -0.046 4.046 15 C -0.573 4.573 16 H 0.048 0.952 17 C -0.196 4.196 18 N -0.595 5.595 19 Si 0.777 3.223 20 H -0.191 1.191 21 H -0.214 1.214 22 H -0.162 1.162 23 N -0.330 5.330 24 H 0.093 0.907 25 H 0.071 0.929 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.112 0.888 33 H 0.167 0.833 34 H 0.187 0.813 35 H 0.160 0.840 36 H 0.238 0.762 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.045 0.955 42 H 0.044 0.956 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 14.489 -20.445 9.198 26.694 hybrid contribution -0.402 0.525 -0.786 1.027 sum 14.087 -19.920 8.412 25.807 Atomic orbital electron populations 1.22514 0.94604 1.02154 1.04292 1.21870 0.94410 0.92687 0.83434 1.22512 1.00776 0.95985 1.04288 1.21849 1.02114 1.00984 0.94344 1.86283 1.70297 1.53166 1.12201 1.19652 0.88877 0.87842 0.86362 1.21000 1.11245 1.06676 0.90004 1.21440 0.90669 0.91857 0.98178 1.21511 1.09446 1.02543 0.97675 1.18269 0.87833 0.86557 0.88976 1.44690 1.53516 1.27475 1.09437 1.21433 0.98123 0.94335 0.84680 1.21456 0.98428 0.95467 0.98719 1.19440 0.95901 0.94414 0.94843 1.21511 1.30928 1.11481 0.93371 0.95243 1.26091 0.94283 0.94553 1.04714 1.70084 1.36085 1.19594 1.33775 0.85605 0.80626 0.78031 0.78079 1.19134 1.21396 1.16190 1.66839 1.21991 1.15494 1.28717 0.90719 0.92924 0.90517 0.90512 0.92922 0.90729 0.91483 0.91481 0.88847 0.83341 0.81344 0.84012 0.76221 0.91210 0.91158 0.92709 0.92715 0.95468 0.95593 0.92548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.74 8.35 71.98 0.60 -3.14 16 2 C 0.11 2.33 1.11 -10.79 -0.01 2.32 16 3 C -0.18 -3.74 8.35 71.98 0.60 -3.14 16 4 C -0.14 -2.01 8.84 71.98 0.64 -1.37 16 5 O -0.31 -7.62 9.77 -89.96 -0.88 -8.50 16 6 C 0.35 9.01 6.77 84.75 0.57 9.58 16 7 C -0.27 -5.75 10.04 22.48 0.23 -5.53 16 8 C 0.00 0.07 10.16 22.42 0.23 0.30 16 9 C -0.29 -6.63 9.32 22.51 0.21 -6.42 16 10 C 0.42 11.18 7.65 133.00 1.02 12.20 16 11 N -0.72 -19.21 5.73 -345.15 -1.98 -21.19 16 12 C 0.14 3.81 4.89 86.38 0.42 4.23 16 13 C -0.10 -3.63 5.27 30.59 0.16 -3.47 16 14 C -0.01 -0.35 4.04 29.85 0.12 -0.23 16 15 C -0.53 -30.19 9.66 25.60 0.25 -29.95 16 16 H 0.03 1.84 7.99 -2.91 -0.02 1.82 16 17 C 0.00 0.00 5.47 84.66 0.46 0.46 16 18 N -0.95 -59.72 13.96 21.45 0.30 -59.42 16 19 Si 0.95 42.94 27.47 68.60 1.88 44.83 16 20 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 21 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 22 H -0.24 -9.68 6.54 99.48 0.65 -9.03 16 23 N -0.60 -15.98 4.60 -306.33 -1.41 -17.39 16 24 H 0.07 1.91 5.57 -2.39 -0.01 1.89 16 25 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.07 1.90 5.58 -2.39 -0.01 1.89 16 30 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.15 2.61 8.06 -2.91 -0.02 2.58 16 34 H 0.17 2.02 8.06 -2.91 -0.02 2.00 16 35 H 0.14 2.95 6.69 -2.91 -0.02 2.93 16 36 H 0.40 10.65 8.60 -92.70 -0.80 9.85 16 37 H 0.07 1.83 7.92 -2.39 -0.02 1.81 16 38 H 0.07 1.83 7.92 -2.39 -0.02 1.81 16 39 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.03 1.14 7.20 -2.39 -0.02 1.13 16 42 H 0.03 1.08 7.57 -2.39 -0.02 1.06 16 43 H 0.27 15.49 8.31 -92.70 -0.77 14.72 16 Total: -1.00 -66.27 344.93 3.55 -62.72 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: 0.13 Total: 23.10 kcal Atomic # 6 Polarization: -29.65 SS G_CDS: 5.49 Total: -24.16 kcal Atomic # 7 Polarization: -94.91 SS G_CDS: -3.09 Total: -98.00 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: -0.88 Total: -8.50 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 1.88 Total: 44.83 kcal Total: -66.27 3.55 -62.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157641121.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.583 kcal (2) G-P(sol) polarization free energy of solvation -66.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds