Wall clock time and date at job start Tue Mar 31 2020 00:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.50703 * 119.99980 * 2 1 4 4 C 1.32998 * 119.99849 * 180.02562 * 2 1 3 5 5 C 1.47097 * 120.00307 * 359.97438 * 4 2 1 6 6 O 1.21612 * 119.99718 * 0.02562 * 5 4 2 7 7 N 1.34773 * 120.00233 * 179.97438 * 5 4 2 8 8 C 1.46499 * 120.00155 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.46956 * 180.02562 * 8 7 5 10 10 C 1.50703 * 109.46898 * 179.97438 * 9 8 7 11 11 C 1.29453 * 117.69778 * 95.00126 * 10 9 8 12 12 C 1.50314 * 123.65486 * 181.13771 * 11 10 9 13 13 N 1.47126 * 109.10610 * 348.54061 * 12 11 10 14 14 C 1.36937 * 121.53633 * 223.15752 * 13 12 11 15 15 H 1.07997 * 119.99691 * 156.35057 * 14 13 12 16 16 C 1.38812 * 119.99919 * 336.35140 * 14 13 12 17 17 N 1.31617 * 120.00056 * 344.28136 * 16 14 13 18 18 Si 1.86801 * 120.00087 * 164.27882 * 16 14 13 19 19 H 1.48495 * 109.46836 * 94.57576 * 18 16 14 20 20 H 1.48492 * 109.47207 * 214.57842 * 18 16 14 21 21 H 1.48505 * 109.46960 * 334.57989 * 18 16 14 22 22 C 1.47346 * 117.08841 * 43.37697 * 13 12 11 23 23 C 1.49970 * 117.69333 * 275.01852 * 10 9 8 24 24 H 1.09007 * 109.47119 * 239.99915 * 1 2 3 25 25 H 1.09001 * 109.47698 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47601 * 119.99754 * 1 2 3 27 27 H 1.08998 * 109.47002 * 270.00435 * 3 2 1 28 28 H 1.09001 * 109.46987 * 29.99574 * 3 2 1 29 29 H 1.08994 * 109.46961 * 150.00555 * 3 2 1 30 30 H 1.07995 * 119.99606 * 180.02562 * 4 2 1 31 31 H 0.97005 * 119.99630 * 0.02562 * 7 5 4 32 32 H 1.08996 * 109.46889 * 60.00251 * 8 7 5 33 33 H 1.09008 * 109.46764 * 300.00217 * 8 7 5 34 34 H 1.09003 * 109.47322 * 59.99823 * 9 8 7 35 35 H 1.08999 * 109.47397 * 299.99550 * 9 8 7 36 36 H 1.07999 * 118.16688 * 0.85284 * 11 10 9 37 37 H 1.09007 * 109.52348 * 108.64837 * 12 11 10 38 38 H 1.09001 * 109.52266 * 228.83155 * 12 11 10 39 39 H 0.97002 * 120.00389 * 180.02562 * 17 16 14 40 40 H 1.08993 * 109.77660 * 178.40331 * 22 13 12 41 41 H 1.09000 * 109.77612 * 57.59524 * 22 13 12 42 42 H 1.09000 * 109.31771 * 281.29104 * 23 10 9 43 43 H 1.09004 * 109.31612 * 40.71818 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1719 -1.1518 -0.0005 5 6 1.4365 -2.4257 -0.0005 6 8 0.2203 -2.4257 -0.0005 7 7 2.1103 -3.5929 -0.0016 8 6 1.3778 -4.8616 -0.0021 9 6 2.3721 -6.0245 -0.0026 10 6 1.6186 -7.3296 -0.0026 11 6 1.4039 -7.9005 -1.1444 12 6 0.6468 -9.1895 -1.3021 13 7 0.4544 -9.8001 0.0226 14 6 0.6346 -11.1423 0.2256 15 1 0.8664 -11.5127 1.2132 16 6 0.5192 -12.0267 -0.8381 17 7 -0.0563 -11.6393 -1.9566 18 14 1.1808 -13.7666 -0.6821 19 1 0.0866 -14.6759 -0.2566 20 1 1.7134 -14.2132 -1.9943 21 1 2.2683 -13.7939 0.3288 22 6 0.0541 -8.9049 1.1223 23 6 1.1700 -7.8753 1.3203 24 1 -0.3634 -0.5139 0.8900 25 1 -0.3634 1.0276 -0.0005 26 1 -0.3634 -0.5138 -0.8900 27 1 2.4420 1.6198 -1.0276 28 1 1.6713 2.0648 0.5138 29 1 3.2129 1.1747 0.5137 30 1 3.2519 -1.1518 -0.0001 31 1 3.0804 -3.5929 -0.0019 32 1 0.7509 -4.9188 -0.8919 33 1 0.7515 -4.9199 0.8881 34 1 2.9988 -5.9671 0.8874 35 1 2.9987 -5.9664 -0.8926 36 1 1.7863 -7.4216 -2.0337 37 1 -0.3225 -8.9891 -1.7589 38 1 1.2151 -9.8706 -1.9354 39 1 -0.1373 -12.2574 -2.6998 40 1 -0.0816 -9.4820 2.0369 41 1 -0.8751 -8.3967 0.8646 42 1 2.0145 -8.3505 1.8194 43 1 0.8010 -7.0586 1.9408 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001159187185.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:42:18 Heat of formation + Delta-G solvation = 3.145124 kcal Electronic energy + Delta-G solvation = -21006.367075 eV Core-core repulsion = 17859.292299 eV Total energy + Delta-G solvation = -3147.074775 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.86885 -37.91787 -36.05646 -35.03094 -33.51489 -31.40756 -29.89099 -29.18194 -28.09431 -27.59134 -25.20901 -23.11070 -22.50155 -21.18093 -20.88850 -18.88464 -17.59574 -17.07009 -16.03550 -15.62421 -15.42707 -15.00006 -14.51161 -14.35423 -14.17873 -13.84651 -13.69737 -13.52631 -13.26096 -12.68623 -12.65115 -12.49221 -12.15578 -12.02073 -11.91814 -11.81678 -11.53495 -11.37691 -10.95622 -10.88822 -10.69875 -10.29850 -10.22230 -9.79497 -9.69087 -9.48428 -9.46289 -8.92891 -8.62911 -7.88865 -6.70189 -5.76255 -3.14414 1.18775 2.88542 3.23257 3.31001 3.39328 3.46097 3.48601 4.49345 4.51959 4.56293 4.94657 5.11870 5.14751 5.15744 5.25529 5.31446 5.42028 5.43576 5.49269 5.59715 5.67950 5.69145 5.83953 5.88210 6.05795 6.09031 6.18893 6.24275 6.25313 6.31639 6.43467 6.47549 6.59010 6.82406 6.93809 7.26576 7.35839 7.43699 7.51979 7.77652 7.91627 8.23471 8.41622 9.23039 9.86145 10.45278 11.34235 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.051753 B = 0.002642 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.906778 B =10594.527745 C =10612.712491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.035 4.035 3 C -0.127 4.127 4 C -0.237 4.237 5 C 0.540 3.460 6 O -0.542 6.542 7 N -0.728 5.728 8 C 0.125 3.875 9 C -0.091 4.091 10 C -0.142 4.142 11 C -0.147 4.147 12 C 0.196 3.804 13 N -0.596 5.596 14 C -0.244 4.244 15 H 0.068 0.932 16 C -0.003 4.003 17 N -0.910 5.910 18 Si 0.904 3.096 19 H -0.288 1.288 20 H -0.290 1.290 21 H -0.280 1.280 22 C 0.142 3.858 23 C -0.091 4.091 24 H 0.083 0.917 25 H 0.051 0.949 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.124 0.876 31 H 0.398 0.602 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.091 0.909 37 H 0.038 0.962 38 H 0.091 0.909 39 H 0.253 0.747 40 H 0.056 0.944 41 H 0.023 0.977 42 H 0.062 0.938 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.018 22.464 3.464 23.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.037 4.037 3 C -0.183 4.183 4 C -0.258 4.258 5 C 0.330 3.670 6 O -0.422 6.422 7 N -0.379 5.379 8 C 0.002 3.998 9 C -0.129 4.129 10 C -0.143 4.143 11 C -0.167 4.167 12 C 0.071 3.929 13 N -0.319 5.319 14 C -0.373 4.373 15 H 0.086 0.914 16 C -0.201 4.201 17 N -0.555 5.555 18 Si 0.734 3.266 19 H -0.215 1.215 20 H -0.216 1.216 21 H -0.205 1.205 22 C 0.016 3.984 23 C -0.130 4.130 24 H 0.102 0.898 25 H 0.070 0.930 26 H 0.101 0.899 27 H 0.097 0.903 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.142 0.858 31 H 0.232 0.768 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.109 0.891 37 H 0.056 0.944 38 H 0.109 0.891 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.041 0.959 42 H 0.080 0.920 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.120 22.308 3.322 23.370 hybrid contribution 1.008 -0.944 -0.103 1.385 sum 7.127 21.364 3.219 22.750 Atomic orbital electron populations 1.21055 0.90734 1.00990 1.04554 1.22586 0.97004 0.94442 0.89664 1.21021 1.00044 0.94369 1.02884 1.22386 0.99947 0.92087 1.11333 1.18565 0.87476 0.84335 0.76649 1.90791 1.13731 1.87730 1.49940 1.46009 1.10240 1.06070 1.75596 1.21404 0.94737 0.81005 1.02639 1.20906 0.97106 0.92840 1.02075 1.20230 1.02809 0.95326 0.95904 1.23109 0.98323 0.99177 0.96047 1.19723 0.96387 0.88760 0.88021 1.44178 1.79192 1.03876 1.04651 1.19181 1.40906 0.81801 0.95421 0.91396 1.24986 0.99810 0.97854 0.97431 1.70020 1.45211 1.35284 1.04991 0.86247 0.78775 0.84639 0.76953 1.21524 1.21599 1.20520 1.20959 0.93519 0.91504 0.92434 1.20757 1.00070 0.98285 0.93882 0.89832 0.93041 0.89872 0.90337 0.90964 0.91169 0.85816 0.76817 0.91396 0.91384 0.91530 0.91596 0.89100 0.94439 0.89132 0.93663 0.92562 0.95870 0.91966 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 8.33 36.00 0.30 -0.85 16 2 C -0.04 -0.30 6.11 -101.17 -0.62 -0.92 16 3 C -0.13 -0.69 9.98 36.01 0.36 -0.33 16 4 C -0.24 -2.21 9.63 -37.81 -0.36 -2.58 16 5 C 0.54 6.83 7.73 -12.67 -0.10 6.73 16 6 O -0.54 -8.73 13.07 5.27 0.07 -8.66 16 7 N -0.73 -8.18 5.55 -61.49 -0.34 -8.53 16 8 C 0.13 1.69 5.66 -4.04 -0.02 1.66 16 9 C -0.09 -1.22 5.32 -27.88 -0.15 -1.37 16 10 C -0.14 -2.50 5.11 -100.99 -0.52 -3.01 16 11 C -0.15 -2.90 9.47 -35.78 -0.34 -3.24 16 12 C 0.20 4.80 5.25 -5.04 -0.03 4.78 16 13 N -0.60 -15.34 3.01 -173.57 -0.52 -15.86 16 14 C -0.24 -6.80 9.71 -15.06 -0.15 -6.95 16 15 H 0.07 1.85 7.88 -52.49 -0.41 1.44 16 16 C 0.00 -0.09 5.01 -17.43 -0.09 -0.18 16 17 N -0.91 -26.67 11.07 55.49 0.61 -26.05 16 18 Si 0.90 21.94 29.58 -169.99 -5.03 16.91 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 C 0.14 3.07 6.57 -3.53 -0.02 3.05 16 23 C -0.09 -1.64 5.95 -28.18 -0.17 -1.81 16 24 H 0.08 0.96 7.22 -51.93 -0.37 0.58 16 25 H 0.05 0.39 7.94 -51.93 -0.41 -0.03 16 26 H 0.08 0.96 7.22 -51.93 -0.37 0.59 16 27 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.33 8.05 -51.93 -0.42 -0.08 16 29 H 0.07 0.32 8.07 -51.93 -0.42 -0.10 16 30 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 31 H 0.40 3.29 8.46 -40.82 -0.35 2.94 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.07 1.00 8.08 -51.92 -0.42 0.58 16 34 H 0.07 0.81 8.11 -51.93 -0.42 0.38 16 35 H 0.07 0.82 7.78 -51.93 -0.40 0.42 16 36 H 0.09 1.59 7.73 -52.49 -0.41 1.19 16 37 H 0.04 0.99 8.14 -51.92 -0.42 0.57 16 38 H 0.09 2.45 6.39 -51.93 -0.33 2.12 16 39 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 40 H 0.06 1.17 7.96 -51.93 -0.41 0.76 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.05 0.83 8.08 -51.93 -0.42 0.41 16 LS Contribution 349.49 15.07 5.27 5.27 Total: -1.00 -32.01 349.49 -9.09 -41.10 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -7.24 Total: 0.84 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -1.90 Total: -5.02 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: -0.25 Total: -50.44 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.07 Total: -8.66 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.01 -9.09 -41.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159187185.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.242 kcal (2) G-P(sol) polarization free energy of solvation -32.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds