Wall clock time and date at job start Tue Mar 31 2020 00:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.50703 * 119.99980 * 2 1 4 4 C 1.32998 * 119.99849 * 180.02562 * 2 1 3 5 5 C 1.47097 * 120.00307 * 359.97438 * 4 2 1 6 6 O 1.21612 * 119.99718 * 0.02562 * 5 4 2 7 7 N 1.34773 * 120.00233 * 179.97438 * 5 4 2 8 8 C 1.46499 * 120.00155 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.46956 * 180.02562 * 8 7 5 10 10 C 1.50703 * 109.46898 * 179.97438 * 9 8 7 11 11 C 1.29453 * 117.69778 * 95.00126 * 10 9 8 12 12 C 1.50314 * 123.65486 * 181.13771 * 11 10 9 13 13 N 1.47126 * 109.10610 * 348.54061 * 12 11 10 14 14 C 1.36937 * 121.53633 * 223.15752 * 13 12 11 15 15 H 1.07997 * 119.99691 * 156.35057 * 14 13 12 16 16 C 1.38812 * 119.99919 * 336.35140 * 14 13 12 17 17 N 1.31617 * 120.00056 * 344.28136 * 16 14 13 18 18 Si 1.86801 * 120.00087 * 164.27882 * 16 14 13 19 19 H 1.48495 * 109.46836 * 94.57576 * 18 16 14 20 20 H 1.48492 * 109.47207 * 214.57842 * 18 16 14 21 21 H 1.48505 * 109.46960 * 334.57989 * 18 16 14 22 22 C 1.47346 * 117.08841 * 43.37697 * 13 12 11 23 23 C 1.49970 * 117.69333 * 275.01852 * 10 9 8 24 24 H 1.09007 * 109.47119 * 239.99915 * 1 2 3 25 25 H 1.09001 * 109.47698 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47601 * 119.99754 * 1 2 3 27 27 H 1.08998 * 109.47002 * 270.00435 * 3 2 1 28 28 H 1.09001 * 109.46987 * 29.99574 * 3 2 1 29 29 H 1.08994 * 109.46961 * 150.00555 * 3 2 1 30 30 H 1.07995 * 119.99606 * 180.02562 * 4 2 1 31 31 H 0.97005 * 119.99630 * 0.02562 * 7 5 4 32 32 H 1.08996 * 109.46889 * 60.00251 * 8 7 5 33 33 H 1.09008 * 109.46764 * 300.00217 * 8 7 5 34 34 H 1.09003 * 109.47322 * 59.99823 * 9 8 7 35 35 H 1.08999 * 109.47397 * 299.99550 * 9 8 7 36 36 H 1.07999 * 118.16688 * 0.85284 * 11 10 9 37 37 H 1.09007 * 109.52348 * 108.64837 * 12 11 10 38 38 H 1.09001 * 109.52266 * 228.83155 * 12 11 10 39 39 H 0.97002 * 120.00389 * 180.02562 * 17 16 14 40 40 H 1.08993 * 109.77660 * 178.40331 * 22 13 12 41 41 H 1.09000 * 109.77612 * 57.59524 * 22 13 12 42 42 H 1.09000 * 109.31771 * 281.29104 * 23 10 9 43 43 H 1.09004 * 109.31612 * 40.71818 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1719 -1.1518 -0.0005 5 6 1.4365 -2.4257 -0.0005 6 8 0.2203 -2.4257 -0.0005 7 7 2.1103 -3.5929 -0.0016 8 6 1.3778 -4.8616 -0.0021 9 6 2.3721 -6.0245 -0.0026 10 6 1.6186 -7.3296 -0.0026 11 6 1.4039 -7.9005 -1.1444 12 6 0.6468 -9.1895 -1.3021 13 7 0.4544 -9.8001 0.0226 14 6 0.6346 -11.1423 0.2256 15 1 0.8664 -11.5127 1.2132 16 6 0.5192 -12.0267 -0.8381 17 7 -0.0563 -11.6393 -1.9566 18 14 1.1808 -13.7666 -0.6821 19 1 0.0866 -14.6759 -0.2566 20 1 1.7134 -14.2132 -1.9943 21 1 2.2683 -13.7939 0.3288 22 6 0.0541 -8.9049 1.1223 23 6 1.1700 -7.8753 1.3203 24 1 -0.3634 -0.5139 0.8900 25 1 -0.3634 1.0276 -0.0005 26 1 -0.3634 -0.5138 -0.8900 27 1 2.4420 1.6198 -1.0276 28 1 1.6713 2.0648 0.5138 29 1 3.2129 1.1747 0.5137 30 1 3.2519 -1.1518 -0.0001 31 1 3.0804 -3.5929 -0.0019 32 1 0.7509 -4.9188 -0.8919 33 1 0.7515 -4.9199 0.8881 34 1 2.9988 -5.9671 0.8874 35 1 2.9987 -5.9664 -0.8926 36 1 1.7863 -7.4216 -2.0337 37 1 -0.3225 -8.9891 -1.7589 38 1 1.2151 -9.8706 -1.9354 39 1 -0.1373 -12.2574 -2.6998 40 1 -0.0816 -9.4820 2.0369 41 1 -0.8751 -8.3967 0.8646 42 1 2.0145 -8.3505 1.8194 43 1 0.8010 -7.0586 1.9408 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001159187185.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:42:17 Heat of formation + Delta-G solvation = -16.556366 kcal Electronic energy + Delta-G solvation = -21007.221395 eV Core-core repulsion = 17859.292299 eV Total energy + Delta-G solvation = -3147.929096 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.83853 -39.49461 -37.06783 -36.10055 -35.06544 -33.18203 -31.52934 -30.56936 -28.76453 -28.56012 -26.90645 -24.71479 -24.02129 -22.52009 -22.12074 -19.71048 -19.45129 -18.02996 -17.47650 -17.03423 -16.64044 -16.50677 -15.78979 -15.53899 -15.30211 -15.15051 -15.10894 -14.73287 -14.45189 -14.21031 -13.83828 -13.39537 -13.31253 -13.26210 -13.15998 -12.84240 -12.79605 -12.65198 -12.58032 -12.40561 -12.33318 -12.17613 -11.88743 -11.67728 -11.23624 -10.69271 -10.61667 -10.29848 -9.80207 -9.49539 -8.76867 -7.88960 -5.30899 0.44535 1.41369 1.46063 1.47131 1.57657 2.34215 2.35761 2.50472 3.27847 3.64968 3.81893 3.95533 3.95813 4.09600 4.13811 4.29154 4.34089 4.53848 4.58113 4.60090 4.68252 4.71247 4.82469 4.85480 4.90247 4.92702 4.97251 5.06997 5.09922 5.16635 5.19944 5.22333 5.40480 5.48561 5.48933 5.57142 5.59882 5.65789 5.87210 6.27499 6.32550 6.66824 7.11772 7.33793 7.81734 8.37369 9.19928 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.051753 B = 0.002642 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.906778 B =10594.527745 C =10612.712491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.032 4.032 3 C -0.123 4.123 4 C -0.245 4.245 5 C 0.530 3.470 6 O -0.587 6.587 7 N -0.716 5.716 8 C 0.134 3.866 9 C -0.078 4.078 10 C -0.120 4.120 11 C -0.175 4.175 12 C 0.206 3.794 13 N -0.615 5.615 14 C -0.257 4.257 15 H 0.072 0.928 16 C -0.059 4.059 17 N -0.942 5.942 18 Si 0.972 3.028 19 H -0.286 1.286 20 H -0.292 1.292 21 H -0.268 1.268 22 C 0.135 3.865 23 C -0.087 4.087 24 H 0.061 0.939 25 H 0.074 0.926 26 H 0.059 0.941 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.157 0.843 31 H 0.416 0.584 32 H 0.045 0.955 33 H 0.055 0.945 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.113 0.887 37 H 0.002 0.998 38 H 0.056 0.944 39 H 0.250 0.750 40 H 0.060 0.940 41 H 0.016 0.984 42 H 0.069 0.931 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.619 24.524 4.816 26.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.034 4.034 3 C -0.179 4.179 4 C -0.266 4.266 5 C 0.322 3.678 6 O -0.470 6.470 7 N -0.368 5.368 8 C 0.010 3.990 9 C -0.115 4.115 10 C -0.121 4.121 11 C -0.194 4.194 12 C 0.081 3.919 13 N -0.340 5.340 14 C -0.387 4.387 15 H 0.090 0.910 16 C -0.253 4.253 17 N -0.589 5.589 18 Si 0.800 3.200 19 H -0.213 1.213 20 H -0.218 1.218 21 H -0.193 1.193 22 C 0.009 3.991 23 C -0.125 4.125 24 H 0.080 0.920 25 H 0.092 0.908 26 H 0.078 0.922 27 H 0.109 0.891 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.175 0.825 31 H 0.253 0.747 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.111 0.889 35 H 0.101 0.899 36 H 0.130 0.870 37 H 0.019 0.981 38 H 0.074 0.926 39 H 0.059 0.941 40 H 0.078 0.922 41 H 0.034 0.966 42 H 0.088 0.912 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.762 24.391 4.701 26.340 hybrid contribution 0.108 -1.515 -0.450 1.584 sum 8.870 22.876 4.251 24.901 Atomic orbital electron populations 1.20993 0.92250 1.01718 1.02437 1.22896 0.96304 0.96012 0.88141 1.21077 1.00371 0.92472 1.03988 1.22497 1.01323 0.90376 1.12392 1.19231 0.87205 0.85648 0.75761 1.90781 1.15801 1.88383 1.52030 1.45829 1.11077 1.04926 1.74945 1.21108 0.94609 0.82216 1.01051 1.20796 0.96689 0.89777 1.04261 1.20588 1.00475 0.96279 0.94753 1.22818 1.00594 0.97875 0.98150 1.19374 0.94943 0.90468 0.87110 1.44477 1.79629 1.03981 1.05869 1.19548 1.40379 0.83132 0.95651 0.91023 1.25821 1.00381 1.01886 0.97230 1.70201 1.46600 1.36467 1.05653 0.85180 0.78212 0.79746 0.76842 1.21273 1.21829 1.19284 1.21157 0.94722 0.91903 0.91296 1.20713 0.98898 0.98171 0.94751 0.91989 0.90762 0.92209 0.89097 0.89998 0.89596 0.82525 0.74692 0.93647 0.92613 0.88892 0.89861 0.86962 0.98051 0.92574 0.94130 0.92174 0.96596 0.91212 0.89714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.26 8.33 71.23 0.59 -1.67 16 2 C -0.03 -0.48 6.11 -17.62 -0.11 -0.59 16 3 C -0.12 -0.91 9.98 71.24 0.71 -0.20 16 4 C -0.25 -3.98 9.63 23.43 0.23 -3.76 16 5 C 0.53 12.76 7.73 86.57 0.67 13.42 16 6 O -0.59 -19.16 13.07 -4.07 -0.05 -19.21 16 7 N -0.72 -14.39 5.55 -466.72 -2.59 -16.99 16 8 C 0.13 3.37 5.66 86.38 0.49 3.86 16 9 C -0.08 -1.81 5.32 29.85 0.16 -1.65 16 10 C -0.12 -4.01 5.11 -15.14 -0.08 -4.09 16 11 C -0.18 -6.92 9.47 27.10 0.26 -6.66 16 12 C 0.21 10.58 5.25 85.39 0.45 11.03 16 13 N -0.62 -32.47 3.01 -703.07 -2.12 -34.59 16 14 C -0.26 -14.61 9.71 84.03 0.82 -13.79 16 15 H 0.07 3.92 7.88 -2.91 -0.02 3.89 16 16 C -0.06 -3.38 5.01 84.86 0.43 -2.95 16 17 N -0.94 -57.49 11.07 21.65 0.24 -57.25 16 18 Si 0.97 45.85 29.58 68.60 2.03 47.88 16 19 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 20 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 21 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 22 C 0.13 5.80 6.57 86.25 0.57 6.37 16 23 C -0.09 -2.95 5.95 29.65 0.18 -2.77 16 24 H 0.06 1.46 7.22 -2.38 -0.02 1.44 16 25 H 0.07 1.02 7.94 -2.39 -0.02 1.00 16 26 H 0.06 1.43 7.22 -2.39 -0.02 1.41 16 27 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.08 0.48 8.05 -2.39 -0.02 0.46 16 29 H 0.09 0.41 8.07 -2.39 -0.02 0.39 16 30 H 0.16 1.44 8.06 -2.91 -0.02 1.42 16 31 H 0.42 5.33 8.46 -92.70 -0.78 4.55 16 32 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.06 1.55 8.08 -2.38 -0.02 1.53 16 34 H 0.09 1.78 8.11 -2.39 -0.02 1.76 16 35 H 0.08 1.74 7.78 -2.39 -0.02 1.72 16 36 H 0.11 3.89 7.73 -2.91 -0.02 3.87 16 37 H 0.00 0.10 8.14 -2.38 -0.02 0.08 16 38 H 0.06 3.21 6.39 -2.39 -0.02 3.19 16 39 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 40 H 0.06 2.49 7.96 -2.39 -0.02 2.47 16 41 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 43 H 0.08 2.39 8.08 -2.38 -0.02 2.37 16 Total: -1.00 -73.25 349.49 3.06 -70.19 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: 0.20 Total: 13.41 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: 5.35 Total: -3.45 kcal Atomic # 7 Polarization: -104.35 SS G_CDS: -4.47 Total: -108.82 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.05 Total: -19.21 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -73.25 3.06 -70.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159187185.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.638 kcal (2) G-P(sol) polarization free energy of solvation -73.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds