Wall clock time and date at job start Tue Mar 31 2020 00:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.32997 * 120.00210 * 2 1 4 4 C 1.50701 * 119.99957 * 180.02562 * 3 2 1 5 5 C 1.47097 * 119.99574 * 0.02562 * 3 2 1 6 6 O 1.21611 * 120.00680 * 359.97438 * 5 3 2 7 7 N 1.34784 * 119.99741 * 179.97438 * 5 3 2 8 8 C 1.46494 * 119.99734 * 179.97438 * 7 5 3 9 9 C 1.53010 * 109.46950 * 179.97438 * 8 7 5 10 10 C 1.50697 * 109.46904 * 179.97438 * 9 8 7 11 11 C 1.29458 * 117.69367 * 95.00454 * 10 9 8 12 12 C 1.50320 * 123.65602 * 181.13583 * 11 10 9 13 13 N 1.47115 * 109.10396 * 348.53877 * 12 11 10 14 14 C 1.36936 * 121.51016 * 223.16054 * 13 12 11 15 15 H 1.08000 * 120.00184 * 156.31047 * 14 13 12 16 16 C 1.38809 * 120.00164 * 336.30464 * 14 13 12 17 17 N 1.31619 * 119.99792 * 344.28579 * 16 14 13 18 18 Si 1.86798 * 120.00198 * 164.29147 * 16 14 13 19 19 H 1.48497 * 109.47521 * 94.57233 * 18 16 14 20 20 H 1.48499 * 109.47129 * 214.57944 * 18 16 14 21 21 H 1.48502 * 109.46919 * 334.57033 * 18 16 14 22 22 C 1.47343 * 117.11206 * 43.34374 * 13 12 11 23 23 C 1.49968 * 117.69700 * 274.97856 * 10 9 8 24 24 H 1.08997 * 109.46870 * 299.99591 * 1 2 3 25 25 H 1.09003 * 109.47430 * 59.99272 * 1 2 3 26 26 H 1.09006 * 109.47413 * 179.97438 * 1 2 3 27 27 H 1.07999 * 120.00109 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.46921 * 270.00048 * 4 3 2 29 29 H 1.08994 * 109.47159 * 30.00581 * 4 3 2 30 30 H 1.09001 * 109.47073 * 150.00628 * 4 3 2 31 31 H 0.97001 * 120.00019 * 359.97438 * 7 5 3 32 32 H 1.09000 * 109.47114 * 60.00827 * 8 7 5 33 33 H 1.09002 * 109.47818 * 299.99862 * 8 7 5 34 34 H 1.09000 * 109.46517 * 60.00485 * 9 8 7 35 35 H 1.08993 * 109.46999 * 300.00593 * 9 8 7 36 36 H 1.08005 * 118.16972 * 0.85690 * 11 10 9 37 37 H 1.08992 * 109.52154 * 108.64475 * 12 11 10 38 38 H 1.08998 * 109.52435 * 228.83966 * 12 11 10 39 39 H 0.97006 * 119.99832 * 180.02562 * 17 16 14 40 40 H 1.08996 * 109.77544 * 178.42646 * 22 13 12 41 41 H 1.09000 * 109.77364 * 57.62619 * 22 13 12 42 42 H 1.09002 * 109.31403 * 281.29267 * 23 10 9 43 43 H 1.08995 * 109.31485 * 40.72303 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6790 1.1517 -0.0006 5 6 1.4364 2.4256 0.0006 6 8 0.2203 2.4257 0.0006 7 7 2.1104 3.5929 0.0011 8 6 1.3779 4.8615 0.0011 9 6 2.3721 6.0245 0.0024 10 6 1.6186 7.3296 0.0017 11 6 1.4031 7.9004 1.1435 12 6 0.6458 9.1894 1.3007 13 7 0.4545 9.8000 -0.0240 14 6 0.6350 11.1423 -0.2262 15 1 0.8683 11.5132 -1.2133 16 6 0.5179 12.0264 0.8376 17 7 -0.0593 11.6385 1.9551 18 14 1.1795 13.7664 0.6831 19 1 0.0859 14.6758 0.2562 20 1 1.7102 14.2126 1.9963 21 1 2.2686 13.7941 -0.3260 22 6 0.0557 8.9052 -1.1246 23 6 1.1717 7.8758 -1.3215 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 2.0470 -0.9353 -0.0004 28 1 4.0427 1.1514 1.0270 29 1 4.0421 0.2619 -0.5148 30 1 4.0421 2.0418 -0.5143 31 1 3.0804 3.5929 0.0015 32 1 0.7510 4.9191 0.8909 33 1 0.7515 4.9196 -0.8891 34 1 2.9994 5.9672 -0.8872 35 1 2.9981 5.9663 0.8927 36 1 1.7849 7.4216 2.0331 37 1 -0.3236 8.9890 1.7567 38 1 1.2137 9.8706 1.9344 39 1 -0.1414 12.2565 2.6983 40 1 -0.0790 9.4828 -2.0391 41 1 -0.8739 8.3970 -0.8683 42 1 2.0169 8.3511 -1.8193 43 1 0.8036 7.0594 -1.9428 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001159754210.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:15 Heat of formation + Delta-G solvation = 5.458322 kcal Electronic energy + Delta-G solvation = -21230.019177 eV Core-core repulsion = 18083.044709 eV Total energy + Delta-G solvation = -3146.974467 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.02518 -37.92308 -35.71476 -35.01940 -33.60599 -31.48657 -30.36607 -29.74645 -28.52699 -25.62750 -24.97837 -23.37184 -22.63387 -21.76829 -20.92710 -19.34675 -17.58894 -16.50250 -16.10095 -15.70407 -15.52968 -15.02322 -14.49009 -14.29200 -14.10042 -13.72580 -13.58945 -13.37567 -13.20348 -12.90442 -12.82071 -12.56579 -12.20037 -12.14262 -11.96886 -11.70809 -11.54427 -11.38603 -10.96915 -10.89303 -10.70295 -10.30259 -10.23048 -9.79909 -9.68590 -9.48894 -9.39451 -8.95492 -8.63382 -7.89733 -6.70647 -5.76721 -3.14913 1.19631 2.86757 3.15923 3.26781 3.39023 3.45833 3.48288 4.50796 4.51626 4.58589 4.92993 5.07525 5.14033 5.23894 5.26564 5.31162 5.41466 5.42081 5.57966 5.60282 5.67360 5.69020 5.82221 5.87680 6.04298 6.07731 6.17658 6.21296 6.24337 6.35065 6.42526 6.44485 6.58259 6.81696 6.93176 7.25871 7.34955 7.42497 7.47786 7.77192 7.90872 8.17997 8.41202 9.22620 9.85707 10.44757 11.33767 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.043277 B = 0.002854 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.837920 B = 9807.320514 C = 9928.261347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.071 4.071 3 C -0.198 4.198 4 C -0.114 4.114 5 C 0.545 3.455 6 O -0.537 6.537 7 N -0.728 5.728 8 C 0.125 3.875 9 C -0.091 4.091 10 C -0.142 4.142 11 C -0.147 4.147 12 C 0.196 3.804 13 N -0.596 5.596 14 C -0.244 4.244 15 H 0.068 0.932 16 C -0.003 4.003 17 N -0.909 5.909 18 Si 0.904 3.096 19 H -0.288 1.288 20 H -0.290 1.290 21 H -0.280 1.280 22 C 0.143 3.857 23 C -0.091 4.091 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.050 0.950 27 H 0.123 0.877 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.398 0.602 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.091 0.909 37 H 0.038 0.962 38 H 0.091 0.909 39 H 0.253 0.747 40 H 0.056 0.944 41 H 0.023 0.977 42 H 0.062 0.938 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.593 -21.317 -3.474 22.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.090 4.090 3 C -0.201 4.201 4 C -0.171 4.171 5 C 0.334 3.666 6 O -0.416 6.416 7 N -0.380 5.380 8 C 0.001 3.999 9 C -0.129 4.129 10 C -0.143 4.143 11 C -0.166 4.166 12 C 0.071 3.929 13 N -0.319 5.319 14 C -0.374 4.374 15 H 0.086 0.914 16 C -0.201 4.201 17 N -0.555 5.555 18 Si 0.734 3.266 19 H -0.215 1.215 20 H -0.216 1.216 21 H -0.205 1.205 22 C 0.016 3.984 23 C -0.130 4.130 24 H 0.099 0.901 25 H 0.100 0.900 26 H 0.069 0.931 27 H 0.140 0.860 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.233 0.767 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.109 0.891 37 H 0.056 0.944 38 H 0.109 0.891 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.041 0.959 42 H 0.080 0.920 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.697 -21.155 -3.330 22.438 hybrid contribution 0.955 0.873 0.098 1.298 sum 7.652 -20.282 -3.232 21.917 Atomic orbital electron populations 1.21035 0.91690 1.00878 1.04315 1.23623 0.97305 0.96578 0.91535 1.21503 0.96356 0.93326 1.08949 1.20765 0.90995 1.02876 1.02468 1.18414 0.87326 0.84114 0.76716 1.90798 1.13553 1.87586 1.49687 1.46078 1.10370 1.06065 1.75449 1.21424 0.94761 0.80950 1.02714 1.20907 0.97106 0.92847 1.02074 1.20225 1.02842 0.95311 0.95917 1.23116 0.98283 0.99176 0.96040 1.19718 0.96379 0.88747 0.88023 1.44173 1.79241 1.03873 1.04609 1.19182 1.40897 0.81808 0.95465 0.91399 1.24985 0.99779 0.97851 0.97437 1.70024 1.45138 1.35289 1.05042 0.86248 0.78776 0.84636 0.76955 1.21516 1.21595 1.20523 1.20954 0.93514 0.91501 0.92422 1.20757 1.00089 0.98291 0.93869 0.90050 0.90041 0.93096 0.85953 0.91083 0.91218 0.91707 0.76717 0.91329 0.91306 0.91535 0.91586 0.89096 0.94438 0.89135 0.93663 0.92563 0.95876 0.91957 0.92896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.20 8.45 36.00 0.30 -0.90 16 2 C -0.07 -0.60 9.95 -36.13 -0.36 -0.96 16 3 C -0.20 -1.86 6.00 -102.85 -0.62 -2.48 16 4 C -0.11 -0.71 9.61 36.01 0.35 -0.36 16 5 C 0.55 6.90 7.72 -12.66 -0.10 6.80 16 6 O -0.54 -8.61 13.07 5.27 0.07 -8.54 16 7 N -0.73 -8.18 5.50 -61.49 -0.34 -8.51 16 8 C 0.12 1.66 5.66 -4.04 -0.02 1.64 16 9 C -0.09 -1.21 5.32 -27.88 -0.15 -1.36 16 10 C -0.14 -2.49 5.11 -100.99 -0.52 -3.00 16 11 C -0.15 -2.88 9.47 -35.78 -0.34 -3.22 16 12 C 0.20 4.79 5.25 -5.04 -0.03 4.76 16 13 N -0.60 -15.29 3.01 -173.59 -0.52 -15.81 16 14 C -0.24 -6.80 9.71 -15.06 -0.15 -6.94 16 15 H 0.07 1.85 7.88 -52.49 -0.41 1.43 16 16 C 0.00 -0.08 5.01 -17.43 -0.09 -0.17 16 17 N -0.91 -26.61 11.07 55.49 0.61 -25.99 16 18 Si 0.90 21.89 29.58 -169.99 -5.03 16.86 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 C 0.14 3.06 6.57 -3.53 -0.02 3.04 16 23 C -0.09 -1.63 5.95 -28.18 -0.17 -1.80 16 24 H 0.08 0.94 7.22 -51.93 -0.37 0.57 16 25 H 0.08 0.93 7.22 -51.93 -0.37 0.56 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.34 8.07 -51.93 -0.42 -0.08 16 30 H 0.06 0.36 6.71 -51.93 -0.35 0.01 16 31 H 0.40 3.37 6.57 -40.82 -0.27 3.10 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.07 1.00 8.09 -51.93 -0.42 0.58 16 34 H 0.07 0.80 8.11 -51.93 -0.42 0.38 16 35 H 0.07 0.81 7.78 -51.93 -0.40 0.41 16 36 H 0.09 1.59 7.73 -52.48 -0.41 1.18 16 37 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.09 2.44 6.39 -51.93 -0.33 2.11 16 39 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 40 H 0.06 1.17 7.96 -51.93 -0.41 0.75 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.05 0.83 8.08 -51.93 -0.42 0.41 16 LS Contribution 346.37 15.07 5.22 5.22 Total: -1.00 -31.80 346.37 -9.00 -40.80 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -7.11 Total: 0.93 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -1.90 Total: -4.95 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: -0.25 Total: -50.32 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.07 Total: -8.54 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.80 -9.00 -40.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159754210.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.258 kcal (2) G-P(sol) polarization free energy of solvation -31.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds