Wall clock time and date at job start Tue Mar 31 2020 00:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.32997 * 120.00210 * 2 1 4 4 C 1.50701 * 119.99957 * 180.02562 * 3 2 1 5 5 C 1.47097 * 119.99574 * 0.02562 * 3 2 1 6 6 O 1.21611 * 120.00680 * 359.97438 * 5 3 2 7 7 N 1.34784 * 119.99741 * 179.97438 * 5 3 2 8 8 C 1.46494 * 119.99734 * 179.97438 * 7 5 3 9 9 C 1.53010 * 109.46950 * 179.97438 * 8 7 5 10 10 C 1.50697 * 109.46904 * 179.97438 * 9 8 7 11 11 C 1.29458 * 117.69367 * 95.00454 * 10 9 8 12 12 C 1.50320 * 123.65602 * 181.13583 * 11 10 9 13 13 N 1.47115 * 109.10396 * 348.53877 * 12 11 10 14 14 C 1.36936 * 121.51016 * 223.16054 * 13 12 11 15 15 H 1.08000 * 120.00184 * 156.31047 * 14 13 12 16 16 C 1.38809 * 120.00164 * 336.30464 * 14 13 12 17 17 N 1.31619 * 119.99792 * 344.28579 * 16 14 13 18 18 Si 1.86798 * 120.00198 * 164.29147 * 16 14 13 19 19 H 1.48497 * 109.47521 * 94.57233 * 18 16 14 20 20 H 1.48499 * 109.47129 * 214.57944 * 18 16 14 21 21 H 1.48502 * 109.46919 * 334.57033 * 18 16 14 22 22 C 1.47343 * 117.11206 * 43.34374 * 13 12 11 23 23 C 1.49968 * 117.69700 * 274.97856 * 10 9 8 24 24 H 1.08997 * 109.46870 * 299.99591 * 1 2 3 25 25 H 1.09003 * 109.47430 * 59.99272 * 1 2 3 26 26 H 1.09006 * 109.47413 * 179.97438 * 1 2 3 27 27 H 1.07999 * 120.00109 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.46921 * 270.00048 * 4 3 2 29 29 H 1.08994 * 109.47159 * 30.00581 * 4 3 2 30 30 H 1.09001 * 109.47073 * 150.00628 * 4 3 2 31 31 H 0.97001 * 120.00019 * 359.97438 * 7 5 3 32 32 H 1.09000 * 109.47114 * 60.00827 * 8 7 5 33 33 H 1.09002 * 109.47818 * 299.99862 * 8 7 5 34 34 H 1.09000 * 109.46517 * 60.00485 * 9 8 7 35 35 H 1.08993 * 109.46999 * 300.00593 * 9 8 7 36 36 H 1.08005 * 118.16972 * 0.85690 * 11 10 9 37 37 H 1.08992 * 109.52154 * 108.64475 * 12 11 10 38 38 H 1.08998 * 109.52435 * 228.83966 * 12 11 10 39 39 H 0.97006 * 119.99832 * 180.02562 * 17 16 14 40 40 H 1.08996 * 109.77544 * 178.42646 * 22 13 12 41 41 H 1.09000 * 109.77364 * 57.62619 * 22 13 12 42 42 H 1.09002 * 109.31403 * 281.29267 * 23 10 9 43 43 H 1.08995 * 109.31485 * 40.72303 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6790 1.1517 -0.0006 5 6 1.4364 2.4256 0.0006 6 8 0.2203 2.4257 0.0006 7 7 2.1104 3.5929 0.0011 8 6 1.3779 4.8615 0.0011 9 6 2.3721 6.0245 0.0024 10 6 1.6186 7.3296 0.0017 11 6 1.4031 7.9004 1.1435 12 6 0.6458 9.1894 1.3007 13 7 0.4545 9.8000 -0.0240 14 6 0.6350 11.1423 -0.2262 15 1 0.8683 11.5132 -1.2133 16 6 0.5179 12.0264 0.8376 17 7 -0.0593 11.6385 1.9551 18 14 1.1795 13.7664 0.6831 19 1 0.0859 14.6758 0.2562 20 1 1.7102 14.2126 1.9963 21 1 2.2686 13.7941 -0.3260 22 6 0.0557 8.9052 -1.1246 23 6 1.1717 7.8758 -1.3215 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 2.0470 -0.9353 -0.0004 28 1 4.0427 1.1514 1.0270 29 1 4.0421 0.2619 -0.5148 30 1 4.0421 2.0418 -0.5143 31 1 3.0804 3.5929 0.0015 32 1 0.7510 4.9191 0.8909 33 1 0.7515 4.9196 -0.8891 34 1 2.9994 5.9672 -0.8872 35 1 2.9981 5.9663 0.8927 36 1 1.7849 7.4216 2.0331 37 1 -0.3236 8.9890 1.7567 38 1 1.2137 9.8706 1.9344 39 1 -0.1414 12.2565 2.6983 40 1 -0.0790 9.4828 -2.0391 41 1 -0.8739 8.3970 -0.8683 42 1 2.0169 8.3511 -1.8193 43 1 0.8036 7.0594 -1.9428 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001159754210.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:14 Heat of formation + Delta-G solvation = -13.942628 kcal Electronic energy + Delta-G solvation = -21230.860465 eV Core-core repulsion = 18083.044709 eV Total energy + Delta-G solvation = -3147.815756 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.98124 -39.50027 -36.91963 -35.86649 -35.17972 -33.21615 -31.57459 -31.13120 -29.86587 -27.21785 -25.80523 -24.83159 -24.17914 -22.92252 -22.41311 -20.28163 -19.45779 -17.71324 -17.22308 -17.00338 -16.80110 -16.57277 -15.81415 -15.55235 -15.25566 -15.12676 -15.05757 -14.58098 -14.34598 -14.01849 -13.75675 -13.63080 -13.48951 -13.35923 -13.19388 -12.88179 -12.80826 -12.76859 -12.58157 -12.35829 -12.31966 -12.17627 -11.89327 -11.67865 -11.23655 -10.69182 -10.59164 -10.25020 -9.79261 -9.49755 -8.76770 -7.88946 -5.30893 0.45462 1.40953 1.46209 1.47239 1.57736 2.26920 2.31252 2.50563 3.27946 3.64815 3.78685 3.95241 3.97774 4.09809 4.11768 4.28571 4.39357 4.52489 4.55728 4.59035 4.67948 4.80244 4.84815 4.85234 4.89642 4.91120 4.96655 5.04421 5.08166 5.16297 5.22241 5.27567 5.40293 5.44224 5.48874 5.55059 5.59939 5.68072 5.86943 6.27272 6.32617 6.60821 7.11906 7.27672 7.81863 8.37376 9.19927 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.043277 B = 0.002854 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.837920 B = 9807.320514 C = 9928.261347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.065 4.065 3 C -0.208 4.208 4 C -0.110 4.110 5 C 0.534 3.466 6 O -0.581 6.581 7 N -0.715 5.715 8 C 0.133 3.867 9 C -0.078 4.078 10 C -0.120 4.120 11 C -0.175 4.175 12 C 0.207 3.793 13 N -0.615 5.615 14 C -0.258 4.258 15 H 0.072 0.928 16 C -0.058 4.058 17 N -0.942 5.942 18 Si 0.972 3.028 19 H -0.286 1.286 20 H -0.292 1.292 21 H -0.268 1.268 22 C 0.135 3.865 23 C -0.087 4.087 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.159 0.841 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.414 0.586 32 H 0.046 0.954 33 H 0.057 0.943 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.113 0.887 37 H 0.002 0.998 38 H 0.056 0.944 39 H 0.250 0.750 40 H 0.060 0.940 41 H 0.016 0.984 42 H 0.070 0.930 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.252 -23.273 -4.840 25.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.085 4.085 3 C -0.211 4.211 4 C -0.167 4.167 5 C 0.325 3.675 6 O -0.463 6.463 7 N -0.368 5.368 8 C 0.009 3.991 9 C -0.116 4.116 10 C -0.121 4.121 11 C -0.194 4.194 12 C 0.082 3.918 13 N -0.340 5.340 14 C -0.388 4.388 15 H 0.090 0.910 16 C -0.252 4.252 17 N -0.589 5.589 18 Si 0.800 3.200 19 H -0.213 1.213 20 H -0.218 1.218 21 H -0.193 1.193 22 C 0.010 3.990 23 C -0.126 4.126 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.093 0.907 27 H 0.177 0.823 28 H 0.098 0.902 29 H 0.106 0.894 30 H 0.090 0.910 31 H 0.252 0.748 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.111 0.889 35 H 0.102 0.898 36 H 0.131 0.869 37 H 0.019 0.981 38 H 0.074 0.926 39 H 0.059 0.941 40 H 0.078 0.922 41 H 0.034 0.966 42 H 0.088 0.912 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.397 -23.132 -4.724 25.411 hybrid contribution 0.035 1.420 0.448 1.489 sum 9.431 -21.712 -4.276 24.056 Atomic orbital electron populations 1.20972 0.93226 1.01630 1.02136 1.23926 0.96438 0.97928 0.90184 1.21652 0.98097 0.91672 1.09687 1.20814 0.88254 1.04201 1.03441 1.19101 0.87096 0.85465 0.75832 1.90787 1.15593 1.88262 1.51695 1.45907 1.11130 1.04989 1.74800 1.21138 0.94639 0.82113 1.01183 1.20799 0.96695 0.89784 1.04278 1.20579 1.00508 0.96256 0.94765 1.22825 1.00546 0.97864 0.98146 1.19365 0.94923 0.90453 0.87099 1.44472 1.79678 1.03972 1.05836 1.19550 1.40379 0.83150 0.95695 0.91033 1.25813 1.00340 1.01859 0.97230 1.70205 1.46529 1.36466 1.05702 0.85185 0.78216 0.79766 0.76842 1.21274 1.21827 1.19290 1.21150 0.94718 0.91896 0.91272 1.20714 0.98916 0.98179 0.94747 0.92463 0.92263 0.90743 0.82314 0.90188 0.89369 0.90976 0.74755 0.93523 0.92475 0.88879 0.89840 0.86946 0.98070 0.92587 0.94133 0.92193 0.96607 0.91193 0.89704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.34 8.45 71.23 0.60 -1.74 16 2 C -0.07 -0.96 9.95 24.52 0.24 -0.71 16 3 C -0.21 -3.41 6.00 -18.70 -0.11 -3.52 16 4 C -0.11 -0.95 9.61 71.24 0.68 -0.26 16 5 C 0.53 12.90 7.72 86.57 0.67 13.57 16 6 O -0.58 -18.90 13.07 -4.06 -0.05 -18.96 16 7 N -0.72 -14.46 5.50 -466.70 -2.57 -17.03 16 8 C 0.13 3.32 5.66 86.38 0.49 3.81 16 9 C -0.08 -1.80 5.32 29.85 0.16 -1.64 16 10 C -0.12 -3.99 5.11 -15.14 -0.08 -4.06 16 11 C -0.17 -6.85 9.47 27.10 0.26 -6.60 16 12 C 0.21 10.56 5.25 85.40 0.45 11.01 16 13 N -0.62 -32.36 3.01 -703.12 -2.12 -34.48 16 14 C -0.26 -14.61 9.71 84.03 0.82 -13.80 16 15 H 0.07 3.90 7.88 -2.91 -0.02 3.88 16 16 C -0.06 -3.32 5.01 84.86 0.43 -2.90 16 17 N -0.94 -57.34 11.07 21.65 0.24 -57.10 16 18 Si 0.97 45.73 29.58 68.60 2.03 47.76 16 19 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 20 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 22 C 0.13 5.80 6.57 86.25 0.57 6.36 16 23 C -0.09 -2.94 5.95 29.65 0.18 -2.76 16 24 H 0.06 1.36 7.22 -2.39 -0.02 1.35 16 25 H 0.06 1.39 7.22 -2.39 -0.02 1.37 16 26 H 0.07 1.00 8.14 -2.38 -0.02 0.99 16 27 H 0.16 1.15 8.06 -2.91 -0.02 1.13 16 28 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.09 0.46 8.07 -2.39 -0.02 0.45 16 30 H 0.07 0.51 6.71 -2.39 -0.02 0.49 16 31 H 0.41 5.56 6.57 -92.71 -0.61 4.95 16 32 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.06 1.57 8.09 -2.39 -0.02 1.55 16 34 H 0.09 1.76 8.11 -2.39 -0.02 1.74 16 35 H 0.08 1.73 7.78 -2.39 -0.02 1.71 16 36 H 0.11 3.86 7.73 -2.91 -0.02 3.84 16 37 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 38 H 0.06 3.19 6.39 -2.39 -0.02 3.18 16 39 H 0.25 14.66 8.31 -92.70 -0.77 13.89 16 40 H 0.06 2.47 7.96 -2.39 -0.02 2.45 16 41 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.08 2.38 8.08 -2.39 -0.02 2.36 16 Total: -1.00 -72.85 346.37 3.25 -69.60 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 0.37 Total: 13.44 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: 5.35 Total: -3.24 kcal Atomic # 7 Polarization: -104.16 SS G_CDS: -4.44 Total: -108.60 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -0.05 Total: -18.96 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -72.85 3.25 -69.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159754210.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.654 kcal (2) G-P(sol) polarization free energy of solvation -72.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds