Wall clock time and date at job start Tue Mar 31 2020 00:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46812 * 2 1 4 4 H 1.09001 * 109.47084 * 304.15700 * 3 2 1 5 5 C 1.50706 * 109.46778 * 184.15903 * 3 2 1 6 6 H 1.07998 * 119.99576 * 239.99222 * 5 3 2 7 7 C 1.37872 * 120.00214 * 60.00115 * 5 3 2 8 8 N 1.31518 * 119.99950 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00193 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47277 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47340 * 119.99599 * 9 7 5 12 12 H 1.48497 * 109.47514 * 239.99685 * 9 7 5 13 13 N 1.46490 * 109.47429 * 64.15814 * 3 2 1 14 14 C 1.39002 * 119.99892 * 205.68527 * 13 3 2 15 15 C 1.39017 * 119.66880 * 354.40597 * 14 13 3 16 16 C 1.38463 * 119.21752 * 179.97438 * 15 14 13 17 17 C 1.38638 * 118.56468 * 359.73849 * 16 15 14 18 18 C 1.38733 * 119.28029 * 0.54634 * 17 16 15 19 19 O 1.35671 * 119.63893 * 179.71405 * 18 17 16 20 20 C 1.42900 * 117.00130 * 179.72957 * 19 18 17 21 21 C 1.53001 * 109.47190 * 59.99899 * 20 19 18 22 22 C 1.53001 * 109.47097 * 300.00200 * 20 19 18 23 23 C 1.53002 * 109.47032 * 179.97438 * 20 19 18 24 24 N 1.32348 * 120.71969 * 359.43653 * 18 17 16 25 25 H 1.08998 * 109.47178 * 54.93387 * 1 2 3 26 26 H 1.09004 * 109.47398 * 174.93772 * 1 2 3 27 27 H 1.09004 * 109.47170 * 294.93451 * 1 2 3 28 28 H 1.08993 * 109.46868 * 239.99688 * 2 1 3 29 29 H 1.09001 * 109.47015 * 119.99341 * 2 1 3 30 30 H 0.96998 * 119.99647 * 180.02562 * 8 7 5 31 31 H 0.96999 * 120.00385 * 25.67977 * 13 3 2 32 32 H 1.07992 * 120.39182 * 359.97438 * 15 14 13 33 33 H 1.07995 * 120.71348 * 180.02562 * 16 15 14 34 34 H 1.08006 * 120.35528 * 180.28470 * 17 16 15 35 35 H 1.09007 * 109.46749 * 299.99986 * 21 20 19 36 36 H 1.09003 * 109.46994 * 59.99479 * 21 20 19 37 37 H 1.08994 * 109.47326 * 179.97438 * 21 20 19 38 38 H 1.08994 * 109.46940 * 179.97438 * 22 20 19 39 39 H 1.09009 * 109.46516 * 299.99672 * 22 20 19 40 40 H 1.08998 * 109.47439 * 59.99758 * 22 20 19 41 41 H 1.08996 * 109.47045 * 300.00033 * 23 20 19 42 42 H 1.08999 * 109.46832 * 60.00350 * 23 20 19 43 43 H 1.09003 * 109.46892 * 179.97438 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6170 1.9774 -0.8504 5 6 3.5435 1.4438 -0.1031 6 1 4.1379 1.8923 0.6792 7 6 4.1600 0.8725 -1.1959 8 7 3.4361 0.3261 -2.1483 9 14 6.0236 0.8747 -1.3240 10 1 6.6009 1.5466 -0.1321 11 1 6.5168 -0.5244 -1.3914 12 1 6.4347 1.6041 -2.5504 13 7 1.6351 2.1036 1.2430 14 6 1.4898 3.4855 1.2798 15 6 1.8420 4.2442 0.1694 16 6 1.6930 5.6200 0.2160 17 6 1.1897 6.1935 1.3736 18 6 0.8632 5.3786 2.4479 19 8 0.3756 5.9326 3.5864 20 6 0.0525 5.0408 4.6551 21 6 1.3075 4.2735 5.0761 22 6 -1.0173 4.0517 4.1883 23 6 -0.4779 5.8424 5.8455 24 7 1.0172 4.0663 2.3724 25 1 -0.3633 0.5904 -0.8411 26 1 -0.3634 -1.0237 -0.0907 27 1 -0.3634 0.4333 0.9319 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 3.8700 -0.0761 -2.9170 31 1 1.4683 1.5771 2.0404 32 1 2.2273 3.7663 -0.7190 33 1 1.9587 6.2327 -0.6327 34 1 1.0572 7.2633 1.4398 35 1 1.6857 3.7024 4.2281 36 1 2.0697 4.9781 5.4087 37 1 1.0611 3.5936 5.8916 38 1 -1.2634 3.3712 5.0033 39 1 -1.9114 4.5985 3.8884 40 1 -0.6391 3.4807 3.3404 41 1 0.2847 6.5467 6.1780 42 1 -1.3718 6.3893 5.5459 43 1 -0.7247 5.1621 6.6606 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161052675.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:33 Heat of formation + Delta-G solvation = -5.327135 kcal Electronic energy + Delta-G solvation = -22513.926689 eV Core-core repulsion = 19366.484529 eV Total energy + Delta-G solvation = -3147.442160 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.33614 -38.30124 -36.04925 -33.83841 -32.64228 -31.72567 -31.05780 -28.18021 -27.22304 -27.11080 -26.66070 -23.31654 -23.09633 -21.73608 -20.48136 -19.46821 -17.33203 -16.75249 -16.45133 -15.31543 -15.20142 -15.06017 -14.81352 -14.28816 -13.99739 -13.63987 -13.42492 -13.11795 -12.68557 -12.46041 -12.35805 -12.29562 -11.90446 -11.77211 -11.73902 -11.46303 -11.36921 -11.24914 -11.03863 -10.80497 -10.63436 -10.52111 -10.18544 -10.02424 -9.84565 -9.75216 -9.13984 -8.74404 -8.52607 -8.33064 -6.76541 -6.12262 -4.24010 2.03523 2.14885 3.21840 3.31007 3.35654 3.40982 4.06394 4.35382 4.56908 4.97066 4.99492 5.13735 5.16667 5.33802 5.51075 5.60638 5.69765 5.83511 5.86079 5.89093 5.94124 6.00799 6.07471 6.11795 6.12433 6.14091 6.29310 6.34366 6.59078 6.61381 6.74581 6.81636 6.86628 6.96148 6.98794 7.12376 7.36756 7.58257 7.76760 7.82664 8.03191 8.16085 8.51267 8.77724 8.94726 9.44359 10.87739 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020959 B = 0.004930 C = 0.004596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.616941 B = 5678.091448 C = 6090.290957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.128 4.128 3 C 0.276 3.724 4 H 0.044 0.956 5 C -0.526 4.526 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.889 5.889 9 Si 0.895 3.105 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 N -0.699 5.699 14 C 0.448 3.552 15 C -0.258 4.258 16 C -0.013 4.013 17 C -0.278 4.278 18 C 0.362 3.638 19 O -0.307 6.307 20 C 0.122 3.878 21 C -0.182 4.182 22 C -0.181 4.181 23 C -0.139 4.139 24 N -0.603 5.603 25 H 0.045 0.955 26 H 0.036 0.964 27 H 0.037 0.963 28 H 0.108 0.892 29 H 0.039 0.961 30 H 0.263 0.737 31 H 0.388 0.612 32 H 0.144 0.856 33 H 0.128 0.872 34 H 0.123 0.877 35 H 0.098 0.902 36 H 0.050 0.950 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.050 0.950 40 H 0.098 0.902 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.615 6.686 8.994 13.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.167 4.167 3 C 0.174 3.826 4 H 0.062 0.938 5 C -0.565 4.565 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.528 5.528 9 Si 0.723 3.277 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 N -0.325 5.325 14 C 0.210 3.790 15 C -0.283 4.283 16 C -0.038 4.038 17 C -0.302 4.302 18 C 0.183 3.817 19 O -0.216 6.216 20 C 0.085 3.915 21 C -0.239 4.239 22 C -0.238 4.238 23 C -0.196 4.196 24 N -0.338 5.338 25 H 0.064 0.936 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.126 0.874 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.222 0.778 32 H 0.162 0.838 33 H 0.146 0.854 34 H 0.141 0.859 35 H 0.117 0.883 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.116 0.884 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.798 6.223 9.371 13.144 hybrid contribution 1.202 0.043 -0.372 1.259 sum -5.596 6.266 8.999 12.311 Atomic orbital electron populations 1.21813 0.98741 0.99523 1.00255 1.21871 0.92163 0.99252 1.03385 1.18879 0.94096 0.89070 0.80583 0.93836 1.21587 0.91342 1.37571 1.05991 0.92130 1.24895 0.98425 0.94909 0.95440 1.69853 1.35072 1.38142 1.09703 0.86478 0.85377 0.77725 0.78108 1.19808 1.20977 1.20894 1.45313 1.70626 1.01534 1.15002 1.18116 0.86954 0.86138 0.87798 1.21515 1.11543 0.93799 1.01454 1.21010 0.92535 0.94310 0.95992 1.20467 1.15769 0.99897 0.94056 1.19217 0.89433 0.87462 0.85548 1.86248 1.77853 1.36028 1.21425 1.21542 0.95230 0.89440 0.85326 1.22570 0.97020 1.00841 1.03470 1.22563 0.97818 0.99670 1.03789 1.21827 1.01430 1.00355 0.96020 1.66825 1.27691 1.10908 1.28405 0.93620 0.94526 0.94395 0.87403 0.94254 0.92678 0.77843 0.83805 0.85408 0.85941 0.88345 0.93110 0.92308 0.92309 0.93136 0.88383 0.91976 0.92000 0.90883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.73 37.16 0.36 -2.32 16 2 C -0.13 -2.75 5.31 -26.73 -0.14 -2.89 16 3 C 0.28 6.25 1.65 -69.09 -0.11 6.14 16 4 H 0.04 1.08 6.67 -51.93 -0.35 0.74 16 5 C -0.53 -13.31 8.38 -34.44 -0.29 -13.60 16 6 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 7 C 0.07 1.68 5.29 -17.82 -0.09 1.59 16 8 N -0.89 -23.33 11.30 55.43 0.63 -22.70 16 9 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 10 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 N -0.70 -14.12 4.73 -55.08 -0.26 -14.38 16 14 C 0.45 8.94 7.62 -155.01 -1.18 7.76 16 15 C -0.26 -5.09 9.07 -39.21 -0.36 -5.45 16 16 C -0.01 -0.22 10.16 -39.35 -0.40 -0.62 16 17 C -0.28 -4.67 10.03 -39.25 -0.39 -5.07 16 18 C 0.36 6.45 6.77 -17.15 -0.12 6.33 16 19 O -0.31 -5.03 9.77 -18.72 -0.18 -5.21 16 20 C 0.12 1.70 1.11 -90.62 -0.10 1.60 16 21 C -0.18 -2.56 8.35 37.16 0.31 -2.25 16 22 C -0.18 -2.49 8.35 37.16 0.31 -2.18 16 23 C -0.14 -1.51 8.84 37.16 0.33 -1.18 16 24 N -0.60 -11.12 4.60 -12.51 -0.06 -11.18 16 25 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.04 0.65 7.87 -51.93 -0.41 0.24 16 28 H 0.11 2.61 5.97 -51.93 -0.31 2.30 16 29 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 31 H 0.39 7.37 8.73 -40.82 -0.36 7.01 16 32 H 0.14 3.09 6.13 -52.49 -0.32 2.76 16 33 H 0.13 1.79 8.06 -52.49 -0.42 1.36 16 34 H 0.12 1.80 8.06 -52.48 -0.42 1.38 16 35 H 0.10 1.64 5.57 -51.93 -0.29 1.35 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 40 H 0.10 1.59 5.57 -51.93 -0.29 1.30 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 342.09 15.07 5.16 5.16 Total: -1.00 -25.80 342.09 -8.56 -34.35 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -6.94 Total: 10.75 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: -1.87 Total: -12.15 kcal Atomic # 7 Polarization: -48.57 SS G_CDS: 0.31 Total: -48.26 kcal Atomic # 8 Polarization: -5.03 SS G_CDS: -0.18 Total: -5.21 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -25.80 -8.56 -34.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161052675.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.025 kcal (2) G-P(sol) polarization free energy of solvation -25.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds