Wall clock time and date at job start Tue Mar 31 2020 00:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46812 * 2 1 4 4 H 1.09001 * 109.47084 * 304.15700 * 3 2 1 5 5 C 1.50706 * 109.46778 * 184.15903 * 3 2 1 6 6 H 1.07998 * 119.99576 * 239.99222 * 5 3 2 7 7 C 1.37872 * 120.00214 * 60.00115 * 5 3 2 8 8 N 1.31518 * 119.99950 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00193 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47277 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47340 * 119.99599 * 9 7 5 12 12 H 1.48497 * 109.47514 * 239.99685 * 9 7 5 13 13 N 1.46490 * 109.47429 * 64.15814 * 3 2 1 14 14 C 1.39002 * 119.99892 * 205.68527 * 13 3 2 15 15 C 1.39017 * 119.66880 * 354.40597 * 14 13 3 16 16 C 1.38463 * 119.21752 * 179.97438 * 15 14 13 17 17 C 1.38638 * 118.56468 * 359.73849 * 16 15 14 18 18 C 1.38733 * 119.28029 * 0.54634 * 17 16 15 19 19 O 1.35671 * 119.63893 * 179.71405 * 18 17 16 20 20 C 1.42900 * 117.00130 * 179.72957 * 19 18 17 21 21 C 1.53001 * 109.47190 * 59.99899 * 20 19 18 22 22 C 1.53001 * 109.47097 * 300.00200 * 20 19 18 23 23 C 1.53002 * 109.47032 * 179.97438 * 20 19 18 24 24 N 1.32348 * 120.71969 * 359.43653 * 18 17 16 25 25 H 1.08998 * 109.47178 * 54.93387 * 1 2 3 26 26 H 1.09004 * 109.47398 * 174.93772 * 1 2 3 27 27 H 1.09004 * 109.47170 * 294.93451 * 1 2 3 28 28 H 1.08993 * 109.46868 * 239.99688 * 2 1 3 29 29 H 1.09001 * 109.47015 * 119.99341 * 2 1 3 30 30 H 0.96998 * 119.99647 * 180.02562 * 8 7 5 31 31 H 0.96999 * 120.00385 * 25.67977 * 13 3 2 32 32 H 1.07992 * 120.39182 * 359.97438 * 15 14 13 33 33 H 1.07995 * 120.71348 * 180.02562 * 16 15 14 34 34 H 1.08006 * 120.35528 * 180.28470 * 17 16 15 35 35 H 1.09007 * 109.46749 * 299.99986 * 21 20 19 36 36 H 1.09003 * 109.46994 * 59.99479 * 21 20 19 37 37 H 1.08994 * 109.47326 * 179.97438 * 21 20 19 38 38 H 1.08994 * 109.46940 * 179.97438 * 22 20 19 39 39 H 1.09009 * 109.46516 * 299.99672 * 22 20 19 40 40 H 1.08998 * 109.47439 * 59.99758 * 22 20 19 41 41 H 1.08996 * 109.47045 * 300.00033 * 23 20 19 42 42 H 1.08999 * 109.46832 * 60.00350 * 23 20 19 43 43 H 1.09003 * 109.46892 * 179.97438 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6170 1.9774 -0.8504 5 6 3.5435 1.4438 -0.1031 6 1 4.1379 1.8923 0.6792 7 6 4.1600 0.8725 -1.1959 8 7 3.4361 0.3261 -2.1483 9 14 6.0236 0.8747 -1.3240 10 1 6.6009 1.5466 -0.1321 11 1 6.5168 -0.5244 -1.3914 12 1 6.4347 1.6041 -2.5504 13 7 1.6351 2.1036 1.2430 14 6 1.4898 3.4855 1.2798 15 6 1.8420 4.2442 0.1694 16 6 1.6930 5.6200 0.2160 17 6 1.1897 6.1935 1.3736 18 6 0.8632 5.3786 2.4479 19 8 0.3756 5.9326 3.5864 20 6 0.0525 5.0408 4.6551 21 6 1.3075 4.2735 5.0761 22 6 -1.0173 4.0517 4.1883 23 6 -0.4779 5.8424 5.8455 24 7 1.0172 4.0663 2.3724 25 1 -0.3633 0.5904 -0.8411 26 1 -0.3634 -1.0237 -0.0907 27 1 -0.3634 0.4333 0.9319 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 3.8700 -0.0761 -2.9170 31 1 1.4683 1.5771 2.0404 32 1 2.2273 3.7663 -0.7190 33 1 1.9587 6.2327 -0.6327 34 1 1.0572 7.2633 1.4398 35 1 1.6857 3.7024 4.2281 36 1 2.0697 4.9781 5.4087 37 1 1.0611 3.5936 5.8916 38 1 -1.2634 3.3712 5.0033 39 1 -1.9114 4.5985 3.8884 40 1 -0.6391 3.4807 3.3404 41 1 0.2847 6.5467 6.1780 42 1 -1.3718 6.3893 5.5459 43 1 -0.7247 5.1621 6.6606 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161052675.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:32 Heat of formation + Delta-G solvation = -17.586558 kcal Electronic energy + Delta-G solvation = -22514.458298 eV Core-core repulsion = 19366.484529 eV Total energy + Delta-G solvation = -3147.973768 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.67945 -39.66482 -37.67117 -35.12161 -34.29690 -33.31812 -32.59006 -29.68058 -28.48049 -28.21395 -28.15188 -25.08996 -24.47444 -23.23475 -21.91173 -20.93916 -18.78250 -18.53025 -17.89218 -16.89495 -16.67589 -16.45085 -16.21344 -15.80321 -15.29359 -15.08672 -14.82018 -14.68134 -14.24015 -13.75568 -13.58102 -13.46541 -13.23548 -13.17539 -12.95057 -12.89265 -12.82292 -12.77129 -12.52627 -12.48714 -12.09060 -11.81566 -11.77437 -11.65201 -11.57085 -11.28962 -10.72875 -10.47889 -10.12946 -9.84173 -8.38565 -8.01196 -6.25967 0.60813 0.70815 1.39085 1.43514 1.52795 2.16125 2.39270 2.61706 3.11591 3.15024 3.82000 3.96569 4.05523 4.12350 4.28563 4.40395 4.46221 4.55095 4.56493 4.68613 4.72308 4.72949 4.75520 4.86724 4.92580 5.01045 5.02061 5.06842 5.20396 5.22320 5.28486 5.33535 5.46781 5.51397 5.58393 5.61808 5.65560 5.72468 5.92660 6.26549 6.35843 6.46480 6.81672 7.01418 7.33465 7.49896 8.89895 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020959 B = 0.004930 C = 0.004596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.616941 B = 5678.091448 C = 6090.290957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.122 4.122 3 C 0.289 3.711 4 H 0.018 0.982 5 C -0.535 4.535 6 H 0.043 0.957 7 C 0.027 3.973 8 N -0.909 5.909 9 Si 0.949 3.051 10 H -0.278 1.278 11 H -0.279 1.279 12 H -0.280 1.280 13 N -0.701 5.701 14 C 0.431 3.569 15 C -0.284 4.284 16 C -0.004 4.004 17 C -0.273 4.273 18 C 0.351 3.649 19 O -0.310 6.310 20 C 0.112 3.888 21 C -0.178 4.178 22 C -0.177 4.177 23 C -0.133 4.133 24 N -0.595 5.595 25 H 0.036 0.964 26 H 0.056 0.944 27 H 0.048 0.952 28 H 0.081 0.919 29 H 0.041 0.959 30 H 0.265 0.735 31 H 0.393 0.607 32 H 0.119 0.881 33 H 0.159 0.841 34 H 0.150 0.850 35 H 0.070 0.930 36 H 0.050 0.950 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.052 0.948 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.236 7.755 10.480 14.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.161 4.161 3 C 0.186 3.814 4 H 0.035 0.965 5 C -0.574 4.574 6 H 0.061 0.939 7 C -0.173 4.173 8 N -0.548 5.548 9 Si 0.775 3.225 10 H -0.203 1.203 11 H -0.204 1.204 12 H -0.206 1.206 13 N -0.328 5.328 14 C 0.194 3.806 15 C -0.310 4.310 16 C -0.029 4.029 17 C -0.297 4.297 18 C 0.172 3.828 19 O -0.219 6.219 20 C 0.075 3.925 21 C -0.236 4.236 22 C -0.235 4.235 23 C -0.190 4.190 24 N -0.330 5.330 25 H 0.055 0.945 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.100 0.900 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.227 0.773 32 H 0.137 0.863 33 H 0.177 0.823 34 H 0.167 0.833 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.071 0.929 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.432 7.310 10.878 15.067 hybrid contribution 1.354 -0.186 -0.753 1.560 sum -6.078 7.124 10.125 13.792 Atomic orbital electron populations 1.21676 0.96239 1.00770 1.00457 1.21701 0.94359 0.97950 1.02079 1.18517 0.92535 0.89589 0.80808 0.96468 1.21731 0.92799 1.37302 1.05566 0.93878 1.25477 1.01732 0.94807 0.95281 1.69950 1.36232 1.38603 1.09988 0.85652 0.81385 0.77718 0.77699 1.20315 1.20435 1.20575 1.44995 1.71594 1.01888 1.14315 1.18233 0.87844 0.86031 0.88503 1.21462 1.13398 0.95255 1.00837 1.21328 0.91155 0.93312 0.97116 1.20835 1.14260 1.01208 0.93369 1.19572 0.89347 0.87379 0.86497 1.86262 1.77505 1.36685 1.21416 1.21881 0.95158 0.89862 0.85595 1.22509 0.97162 1.00915 1.02982 1.22498 0.97679 0.99753 1.03527 1.21835 1.01583 1.00584 0.95037 1.66901 1.27119 1.11471 1.27510 0.94456 0.92491 0.93296 0.90035 0.94068 0.92606 0.77319 0.86313 0.82341 0.83275 0.91166 0.93140 0.90242 0.90270 0.92892 0.91015 0.91582 0.91418 0.88641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.89 9.73 71.98 0.70 -4.19 16 2 C -0.12 -5.34 5.31 30.59 0.16 -5.18 16 3 C 0.29 13.56 1.65 44.25 0.07 13.63 16 4 H 0.02 0.91 6.67 -2.39 -0.02 0.90 16 5 C -0.53 -27.93 8.38 25.60 0.21 -27.71 16 6 H 0.04 2.35 7.81 -2.91 -0.02 2.33 16 7 C 0.03 1.42 5.29 84.65 0.45 1.87 16 8 N -0.91 -48.69 11.30 21.45 0.24 -48.45 16 9 Si 0.95 42.37 29.54 68.60 2.03 44.40 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 12 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 13 N -0.70 -29.13 4.73 -328.17 -1.55 -30.68 16 14 C 0.43 17.55 7.62 133.02 1.01 18.57 16 15 C -0.28 -11.48 9.07 22.51 0.20 -11.27 16 16 C 0.00 -0.14 10.16 22.42 0.23 0.09 16 17 C -0.27 -8.69 10.03 22.48 0.23 -8.47 16 18 C 0.35 12.12 6.77 84.73 0.57 12.69 16 19 O -0.31 -9.60 9.77 -89.88 -0.88 -10.48 16 20 C 0.11 2.89 1.11 -10.79 -0.01 2.87 16 21 C -0.18 -4.75 8.35 71.98 0.60 -4.15 16 22 C -0.18 -4.56 8.35 71.98 0.60 -3.96 16 23 C -0.13 -2.46 8.84 71.98 0.64 -1.83 16 24 N -0.60 -21.91 4.60 -306.32 -1.41 -23.32 16 25 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 27 H 0.05 1.66 7.87 -2.38 -0.02 1.64 16 28 H 0.08 4.04 5.97 -2.39 -0.01 4.02 16 29 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.26 13.54 8.31 -92.71 -0.77 12.77 16 31 H 0.39 15.23 8.73 -92.71 -0.81 14.42 16 32 H 0.12 5.37 6.13 -2.91 -0.02 5.36 16 33 H 0.16 4.12 8.06 -2.91 -0.02 4.10 16 34 H 0.15 3.92 8.06 -2.91 -0.02 3.90 16 35 H 0.07 2.31 5.57 -2.38 -0.01 2.29 16 36 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 40 H 0.07 2.27 5.57 -2.39 -0.01 2.25 16 41 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -56.20 342.09 4.28 -51.92 By element: Atomic # 1 Polarization: 33.46 SS G_CDS: 0.18 Total: 33.65 kcal Atomic # 6 Polarization: -22.69 SS G_CDS: 5.67 Total: -17.02 kcal Atomic # 7 Polarization: -99.74 SS G_CDS: -2.72 Total: -102.46 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -0.88 Total: -10.48 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -56.20 4.28 -51.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161052675.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.329 kcal (2) G-P(sol) polarization free energy of solvation -56.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds