Wall clock time and date at job start Tue Mar 31 2020 00:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47070 * 2 1 4 4 H 1.08996 * 109.47479 * 304.16165 * 3 2 1 5 5 C 1.50699 * 109.47279 * 184.15807 * 3 2 1 6 6 H 1.07998 * 120.00090 * 240.00280 * 5 3 2 7 7 C 1.37875 * 120.00102 * 60.00286 * 5 3 2 8 8 N 1.31514 * 119.99827 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00247 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.46969 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47305 * 119.99939 * 9 7 5 12 12 H 1.48501 * 109.47255 * 239.99921 * 9 7 5 13 13 N 1.46510 * 109.46838 * 64.16128 * 3 2 1 14 14 C 1.38992 * 119.99695 * 205.69284 * 13 3 2 15 15 C 1.39025 * 119.67183 * 354.41680 * 14 13 3 16 16 C 1.38455 * 119.21633 * 180.02562 * 15 14 13 17 17 C 1.38628 * 118.57029 * 0.24358 * 16 15 14 18 18 C 1.38733 * 119.27968 * 359.48521 * 17 16 15 19 19 O 1.35676 * 119.64180 * 180.26856 * 18 17 16 20 20 C 1.42898 * 116.99991 * 180.25425 * 19 18 17 21 21 C 1.53001 * 109.47124 * 180.02562 * 20 19 18 22 22 C 1.52996 * 109.47444 * 174.99999 * 21 20 19 23 23 C 1.52999 * 109.47216 * 295.00464 * 21 20 19 24 24 N 1.32352 * 120.72158 * 0.53284 * 18 17 16 25 25 H 1.08999 * 109.46705 * 174.93328 * 1 2 3 26 26 H 1.09001 * 109.46617 * 294.92620 * 1 2 3 27 27 H 1.08992 * 109.47514 * 54.92687 * 1 2 3 28 28 H 1.09008 * 109.47070 * 240.00889 * 2 1 3 29 29 H 1.08993 * 109.47883 * 120.00395 * 2 1 3 30 30 H 0.96998 * 120.00004 * 179.97438 * 8 7 5 31 31 H 0.96995 * 119.99908 * 25.69157 * 13 3 2 32 32 H 1.07998 * 120.38686 * 359.97197 * 15 14 13 33 33 H 1.08001 * 120.71305 * 179.97438 * 16 15 14 34 34 H 1.08002 * 120.36208 * 179.75672 * 17 16 15 35 35 H 1.09002 * 109.47437 * 300.00337 * 20 19 18 36 36 H 1.08997 * 109.47406 * 60.00513 * 20 19 18 37 37 H 1.09002 * 109.46907 * 54.99735 * 21 20 19 38 38 H 1.09009 * 109.47022 * 60.00229 * 22 21 20 39 39 H 1.09000 * 109.47486 * 179.97438 * 22 21 20 40 40 H 1.09000 * 109.47395 * 300.00109 * 22 21 20 41 41 H 1.09000 * 109.47562 * 180.02562 * 23 21 20 42 42 H 1.09009 * 109.46932 * 299.99576 * 23 21 20 43 43 H 1.08998 * 109.47546 * 59.99528 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6171 1.9775 -0.8503 5 6 3.5435 1.4438 -0.1030 6 1 4.1379 1.8922 0.6792 7 6 4.1601 0.8726 -1.1959 8 7 3.4362 0.3262 -2.1483 9 14 6.0237 0.8736 -1.3233 10 1 6.6010 1.5435 -0.1303 11 1 6.5160 -0.5258 -1.3913 12 1 6.4357 1.6033 -2.5493 13 7 1.6351 2.1036 1.2432 14 6 1.4897 3.4854 1.2801 15 6 1.8416 4.2443 0.1696 16 6 1.6934 5.6200 0.2168 17 6 1.2013 6.1944 1.3786 18 6 0.8640 5.3785 2.4487 19 8 0.3766 5.9324 3.5873 20 6 0.0528 5.0403 4.6557 21 6 -0.4784 5.8417 5.8459 22 6 -0.9414 4.8802 6.9423 23 6 0.6325 6.7409 6.3919 24 7 1.0172 4.0661 2.3729 25 1 -0.3633 -1.0237 -0.0908 26 1 -0.3632 0.4331 0.9320 27 1 -0.3634 0.5905 -0.8410 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8898 30 1 3.8699 -0.0753 -2.9174 31 1 1.4686 1.5769 2.0405 32 1 2.2268 3.7663 -0.7189 33 1 1.9595 6.2329 -0.6317 34 1 1.0778 7.2651 1.4483 35 1 -0.7098 4.3362 4.3227 36 1 0.9465 4.4931 4.9556 37 1 -1.3184 6.4570 5.5237 38 1 -0.1012 4.2649 7.2645 39 1 -1.3194 5.4511 7.7904 40 1 -1.7328 4.2396 6.5533 41 1 0.2542 7.3115 7.2401 42 1 1.4726 6.1256 6.7141 43 1 0.9624 7.4259 5.6108 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161053313.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:36 Heat of formation + Delta-G solvation = -22.899141 kcal Electronic energy + Delta-G solvation = -21721.755534 eV Core-core repulsion = 18573.551395 eV Total energy + Delta-G solvation = -3148.204139 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.00448 -38.12511 -36.14036 -35.04843 -32.77702 -31.69355 -31.02842 -28.49810 -27.27585 -26.76991 -26.11241 -23.33499 -22.48142 -21.85765 -20.21007 -19.85951 -17.80895 -16.94595 -16.48430 -15.97404 -15.25228 -15.04594 -14.85525 -14.46547 -14.18840 -13.56511 -13.46355 -13.14900 -12.80661 -12.70012 -12.52934 -12.47268 -12.26285 -11.86547 -11.50534 -11.36049 -11.23591 -11.16244 -11.04072 -10.82303 -10.68870 -10.58498 -10.19518 -10.03374 -9.84432 -9.75676 -9.20250 -9.00209 -8.53271 -8.38567 -6.76615 -6.12054 -4.23851 2.04118 2.13867 3.22097 3.31124 3.35589 3.37688 4.08056 4.35946 4.59276 4.75755 4.79056 5.00251 5.13838 5.31512 5.43880 5.47273 5.52833 5.68722 5.72662 5.80195 5.83794 5.87006 5.93377 5.94598 6.07901 6.12026 6.16130 6.21968 6.25962 6.34766 6.71549 6.75163 6.86716 6.94375 6.98879 7.10414 7.36418 7.58337 7.75970 7.77194 8.03194 8.16319 8.51496 8.77832 8.95358 9.44481 10.87985 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020258 B = 0.004100 C = 0.003877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.814336 B = 6827.728074 C = 7221.003399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.128 4.128 3 C 0.276 3.724 4 H 0.044 0.956 5 C -0.527 4.527 6 H 0.061 0.939 7 C 0.065 3.935 8 N -0.889 5.889 9 Si 0.896 3.104 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 N -0.699 5.699 14 C 0.453 3.547 15 C -0.258 4.258 16 C -0.013 4.013 17 C -0.276 4.276 18 C 0.357 3.643 19 O -0.312 6.312 20 C 0.078 3.922 21 C -0.097 4.097 22 C -0.144 4.144 23 C -0.146 4.146 24 N -0.614 5.614 25 H 0.036 0.964 26 H 0.037 0.963 27 H 0.045 0.955 28 H 0.108 0.892 29 H 0.039 0.961 30 H 0.263 0.737 31 H 0.389 0.611 32 H 0.145 0.855 33 H 0.129 0.871 34 H 0.124 0.876 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.853 7.916 10.283 14.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.167 4.167 3 C 0.173 3.827 4 H 0.062 0.938 5 C -0.566 4.566 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.528 5.528 9 Si 0.724 3.276 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 N -0.325 5.325 14 C 0.214 3.786 15 C -0.283 4.283 16 C -0.039 4.039 17 C -0.300 4.300 18 C 0.178 3.822 19 O -0.219 6.219 20 C 0.003 3.997 21 C -0.116 4.116 22 C -0.202 4.202 23 C -0.203 4.203 24 N -0.349 5.349 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.126 0.874 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.222 0.778 32 H 0.163 0.837 33 H 0.147 0.853 34 H 0.142 0.858 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.035 7.444 10.667 14.787 hybrid contribution 1.218 -0.047 -0.442 1.296 sum -5.817 7.397 10.225 13.896 Atomic orbital electron populations 1.21812 0.98737 0.99536 1.00265 1.21873 0.92177 0.99224 1.03405 1.18893 0.94121 0.89097 0.80547 0.93816 1.21592 0.91337 1.37614 1.06017 0.92119 1.24901 0.98477 0.94887 0.95429 1.69851 1.35095 1.38141 1.09679 0.86470 0.85318 0.77739 0.78118 1.19791 1.20960 1.20864 1.45332 1.70549 1.01548 1.15035 1.18011 0.86855 0.86133 0.87556 1.21525 1.11501 0.93836 1.01447 1.21018 0.92574 0.94295 0.95977 1.20447 1.15732 0.99819 0.93989 1.19245 0.89861 0.87493 0.85633 1.86160 1.78245 1.35873 1.21667 1.22566 1.00382 0.91666 0.85122 1.21166 0.99016 0.97372 0.94028 1.21758 1.01431 0.99135 0.97830 1.21813 0.98066 0.99616 1.00810 1.66638 1.27803 1.11095 1.29399 0.94491 0.94409 0.93606 0.87369 0.94234 0.92663 0.77814 0.83687 0.85281 0.85832 0.92014 0.91904 0.90457 0.92333 0.92073 0.92378 0.92837 0.92757 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 9.73 37.16 0.36 -2.37 16 2 C -0.13 -2.79 5.31 -26.73 -0.14 -2.93 16 3 C 0.28 6.37 1.65 -69.08 -0.11 6.25 16 4 H 0.04 1.10 6.67 -51.93 -0.35 0.76 16 5 C -0.53 -13.51 8.38 -34.44 -0.29 -13.80 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.07 1.69 5.29 -17.82 -0.09 1.59 16 8 N -0.89 -23.47 11.29 55.43 0.63 -22.85 16 9 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 10 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 N -0.70 -14.66 4.73 -55.07 -0.26 -14.92 16 14 C 0.45 9.44 7.62 -155.02 -1.18 8.26 16 15 C -0.26 -5.21 9.07 -39.21 -0.36 -5.57 16 16 C -0.01 -0.23 10.16 -39.36 -0.40 -0.63 16 17 C -0.28 -4.69 10.03 -39.25 -0.39 -5.09 16 18 C 0.36 6.55 7.48 -17.14 -0.13 6.42 16 19 O -0.31 -5.08 9.65 -18.73 -0.18 -5.26 16 20 C 0.08 1.09 4.69 37.16 0.17 1.26 16 21 C -0.10 -1.04 3.16 -90.62 -0.29 -1.32 16 22 C -0.14 -1.26 9.19 37.16 0.34 -0.92 16 23 C -0.15 -1.48 9.09 37.16 0.34 -1.14 16 24 N -0.61 -12.12 9.24 -12.51 -0.12 -12.24 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.04 0.67 7.87 -51.93 -0.41 0.26 16 27 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.11 2.64 5.97 -51.92 -0.31 2.33 16 29 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 31 H 0.39 7.69 8.73 -40.82 -0.36 7.34 16 32 H 0.15 3.15 6.13 -52.49 -0.32 2.83 16 33 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 34 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 35 H 0.06 0.89 8.10 -51.93 -0.42 0.47 16 36 H 0.06 0.92 8.10 -51.93 -0.42 0.50 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 43 H 0.06 0.70 7.82 -51.93 -0.41 0.30 16 LS Contribution 351.55 15.07 5.30 5.30 Total: -1.00 -26.61 351.55 -9.01 -35.62 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -7.19 Total: 8.87 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -2.17 Total: -9.98 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: 0.25 Total: -50.01 kcal Atomic # 8 Polarization: -5.08 SS G_CDS: -0.18 Total: -5.26 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -26.61 -9.01 -35.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161053313.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.717 kcal (2) G-P(sol) polarization free energy of solvation -26.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds