Wall clock time and date at job start Tue Mar 31 2020 00:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47070 * 2 1 4 4 H 1.08996 * 109.47479 * 304.16165 * 3 2 1 5 5 C 1.50699 * 109.47279 * 184.15807 * 3 2 1 6 6 H 1.07998 * 120.00090 * 240.00280 * 5 3 2 7 7 C 1.37875 * 120.00102 * 60.00286 * 5 3 2 8 8 N 1.31514 * 119.99827 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00247 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.46969 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47305 * 119.99939 * 9 7 5 12 12 H 1.48501 * 109.47255 * 239.99921 * 9 7 5 13 13 N 1.46510 * 109.46838 * 64.16128 * 3 2 1 14 14 C 1.38992 * 119.99695 * 205.69284 * 13 3 2 15 15 C 1.39025 * 119.67183 * 354.41680 * 14 13 3 16 16 C 1.38455 * 119.21633 * 180.02562 * 15 14 13 17 17 C 1.38628 * 118.57029 * 0.24358 * 16 15 14 18 18 C 1.38733 * 119.27968 * 359.48521 * 17 16 15 19 19 O 1.35676 * 119.64180 * 180.26856 * 18 17 16 20 20 C 1.42898 * 116.99991 * 180.25425 * 19 18 17 21 21 C 1.53001 * 109.47124 * 180.02562 * 20 19 18 22 22 C 1.52996 * 109.47444 * 174.99999 * 21 20 19 23 23 C 1.52999 * 109.47216 * 295.00464 * 21 20 19 24 24 N 1.32352 * 120.72158 * 0.53284 * 18 17 16 25 25 H 1.08999 * 109.46705 * 174.93328 * 1 2 3 26 26 H 1.09001 * 109.46617 * 294.92620 * 1 2 3 27 27 H 1.08992 * 109.47514 * 54.92687 * 1 2 3 28 28 H 1.09008 * 109.47070 * 240.00889 * 2 1 3 29 29 H 1.08993 * 109.47883 * 120.00395 * 2 1 3 30 30 H 0.96998 * 120.00004 * 179.97438 * 8 7 5 31 31 H 0.96995 * 119.99908 * 25.69157 * 13 3 2 32 32 H 1.07998 * 120.38686 * 359.97197 * 15 14 13 33 33 H 1.08001 * 120.71305 * 179.97438 * 16 15 14 34 34 H 1.08002 * 120.36208 * 179.75672 * 17 16 15 35 35 H 1.09002 * 109.47437 * 300.00337 * 20 19 18 36 36 H 1.08997 * 109.47406 * 60.00513 * 20 19 18 37 37 H 1.09002 * 109.46907 * 54.99735 * 21 20 19 38 38 H 1.09009 * 109.47022 * 60.00229 * 22 21 20 39 39 H 1.09000 * 109.47486 * 179.97438 * 22 21 20 40 40 H 1.09000 * 109.47395 * 300.00109 * 22 21 20 41 41 H 1.09000 * 109.47562 * 180.02562 * 23 21 20 42 42 H 1.09009 * 109.46932 * 299.99576 * 23 21 20 43 43 H 1.08998 * 109.47546 * 59.99528 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6171 1.9775 -0.8503 5 6 3.5435 1.4438 -0.1030 6 1 4.1379 1.8922 0.6792 7 6 4.1601 0.8726 -1.1959 8 7 3.4362 0.3262 -2.1483 9 14 6.0237 0.8736 -1.3233 10 1 6.6010 1.5435 -0.1303 11 1 6.5160 -0.5258 -1.3913 12 1 6.4357 1.6033 -2.5493 13 7 1.6351 2.1036 1.2432 14 6 1.4897 3.4854 1.2801 15 6 1.8416 4.2443 0.1696 16 6 1.6934 5.6200 0.2168 17 6 1.2013 6.1944 1.3786 18 6 0.8640 5.3785 2.4487 19 8 0.3766 5.9324 3.5873 20 6 0.0528 5.0403 4.6557 21 6 -0.4784 5.8417 5.8459 22 6 -0.9414 4.8802 6.9423 23 6 0.6325 6.7409 6.3919 24 7 1.0172 4.0661 2.3729 25 1 -0.3633 -1.0237 -0.0908 26 1 -0.3632 0.4331 0.9320 27 1 -0.3634 0.5905 -0.8410 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8898 30 1 3.8699 -0.0753 -2.9174 31 1 1.4686 1.5769 2.0405 32 1 2.2268 3.7663 -0.7189 33 1 1.9595 6.2329 -0.6317 34 1 1.0778 7.2651 1.4483 35 1 -0.7098 4.3362 4.3227 36 1 0.9465 4.4931 4.9556 37 1 -1.3184 6.4570 5.5237 38 1 -0.1012 4.2649 7.2645 39 1 -1.3194 5.4511 7.7904 40 1 -1.7328 4.2396 6.5533 41 1 0.2542 7.3115 7.2401 42 1 1.4726 6.1256 6.7141 43 1 0.9624 7.4259 5.6108 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161053313.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:35 Heat of formation + Delta-G solvation = -36.977665 kcal Electronic energy + Delta-G solvation = -21722.366024 eV Core-core repulsion = 18573.551395 eV Total energy + Delta-G solvation = -3148.814630 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.43440 -39.48598 -37.70966 -36.11502 -34.53535 -33.36613 -32.58620 -29.96644 -28.57023 -28.03475 -27.29197 -25.12951 -23.89465 -23.38084 -21.57468 -21.13826 -19.22155 -18.62594 -18.23854 -17.17520 -16.90790 -16.66554 -16.19397 -15.81343 -15.47153 -15.02124 -14.93501 -14.50764 -14.24637 -14.09586 -13.83099 -13.53056 -13.48106 -13.19510 -13.05038 -12.96079 -12.77864 -12.50782 -12.40198 -12.08084 -12.02099 -11.79468 -11.71966 -11.61168 -11.58777 -11.33764 -10.81570 -10.53289 -10.45790 -9.98284 -8.41709 -8.03323 -6.27458 0.56444 0.66386 1.39080 1.43238 1.52864 2.08890 2.38193 2.59276 3.08437 3.13617 3.83259 3.86909 3.91327 4.14284 4.30875 4.38350 4.44378 4.52076 4.53693 4.54729 4.60801 4.72087 4.75024 4.76090 4.82308 4.98439 5.01208 5.03794 5.17477 5.20568 5.26571 5.31767 5.36876 5.40730 5.49022 5.58748 5.60896 5.70245 5.89942 6.24724 6.31672 6.34615 6.79216 6.95893 7.29775 7.47351 8.88894 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020258 B = 0.004100 C = 0.003877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.814336 B = 6827.728074 C = 7221.003399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.122 4.122 3 C 0.288 3.712 4 H 0.019 0.981 5 C -0.538 4.538 6 H 0.043 0.957 7 C 0.027 3.973 8 N -0.908 5.908 9 Si 0.950 3.050 10 H -0.278 1.278 11 H -0.278 1.278 12 H -0.279 1.279 13 N -0.702 5.702 14 C 0.434 3.566 15 C -0.283 4.283 16 C -0.002 4.002 17 C -0.267 4.267 18 C 0.345 3.655 19 O -0.310 6.310 20 C 0.076 3.924 21 C -0.092 4.092 22 C -0.141 4.141 23 C -0.144 4.144 24 N -0.621 5.621 25 H 0.057 0.943 26 H 0.046 0.954 27 H 0.037 0.963 28 H 0.083 0.917 29 H 0.040 0.960 30 H 0.265 0.735 31 H 0.392 0.608 32 H 0.122 0.878 33 H 0.164 0.836 34 H 0.155 0.845 35 H 0.054 0.946 36 H 0.051 0.949 37 H 0.082 0.918 38 H 0.056 0.944 39 H 0.080 0.920 40 H 0.058 0.942 41 H 0.074 0.926 42 H 0.050 0.950 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.326 9.228 11.385 16.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.161 4.161 3 C 0.185 3.815 4 H 0.037 0.963 5 C -0.577 4.577 6 H 0.061 0.939 7 C -0.173 4.173 8 N -0.547 5.547 9 Si 0.777 3.223 10 H -0.203 1.203 11 H -0.204 1.204 12 H -0.204 1.204 13 N -0.329 5.329 14 C 0.197 3.803 15 C -0.308 4.308 16 C -0.027 4.027 17 C -0.291 4.291 18 C 0.165 3.835 19 O -0.217 6.217 20 C 0.001 3.999 21 C -0.110 4.110 22 C -0.198 4.198 23 C -0.201 4.201 24 N -0.356 5.356 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.101 0.899 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.226 0.774 32 H 0.140 0.860 33 H 0.182 0.818 34 H 0.172 0.828 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.101 0.899 38 H 0.075 0.925 39 H 0.099 0.901 40 H 0.077 0.923 41 H 0.093 0.907 42 H 0.069 0.931 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.520 8.775 11.788 16.508 hybrid contribution 1.325 -0.341 -0.721 1.547 sum -6.195 8.435 11.067 15.232 Atomic orbital electron populations 1.21678 0.96241 1.00846 1.00415 1.21709 0.94372 0.97898 1.02137 1.18553 0.92640 0.89638 0.80674 0.96324 1.21726 0.92735 1.37524 1.05669 0.93906 1.25493 1.01890 0.94711 0.95219 1.69946 1.36305 1.38501 1.09951 0.85627 0.81172 0.77766 0.77747 1.20326 1.20385 1.20423 1.45058 1.71526 1.01900 1.14425 1.18152 0.87799 0.86071 0.88277 1.21486 1.13238 0.95357 1.00723 1.21387 0.90916 0.93226 0.97168 1.20842 1.13881 1.01251 0.93083 1.19653 0.89807 0.87275 0.86759 1.86183 1.77826 1.36190 1.21522 1.22766 0.99686 0.92017 0.85470 1.21196 0.99204 0.97527 0.93103 1.21755 1.01414 0.98961 0.97709 1.21803 0.97816 0.99371 1.01148 1.66614 1.27919 1.12103 1.28999 0.92366 0.93471 0.94358 0.89881 0.94087 0.92531 0.77398 0.85976 0.81842 0.82769 0.92787 0.93096 0.89919 0.92498 0.90101 0.92277 0.90699 0.93094 0.93135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.98 9.73 71.98 0.70 -4.28 16 2 C -0.12 -5.42 5.31 30.60 0.16 -5.26 16 3 C 0.29 13.74 1.65 44.24 0.07 13.81 16 4 H 0.02 0.99 6.67 -2.39 -0.02 0.98 16 5 C -0.54 -28.35 8.38 25.60 0.21 -28.14 16 6 H 0.04 2.36 7.81 -2.91 -0.02 2.34 16 7 C 0.03 1.42 5.29 84.65 0.45 1.87 16 8 N -0.91 -48.75 11.29 21.45 0.24 -48.51 16 9 Si 0.95 42.44 29.54 68.60 2.03 44.46 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 12 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 13 N -0.70 -30.22 4.73 -328.14 -1.55 -31.77 16 14 C 0.43 18.40 7.62 133.02 1.01 19.41 16 15 C -0.28 -11.57 9.07 22.51 0.20 -11.36 16 16 C 0.00 -0.07 10.16 22.41 0.23 0.16 16 17 C -0.27 -8.50 10.03 22.48 0.23 -8.28 16 18 C 0.34 12.27 7.48 84.73 0.63 12.91 16 19 O -0.31 -9.70 9.65 -89.94 -0.87 -10.56 16 20 C 0.08 2.05 4.69 71.98 0.34 2.38 16 21 C -0.09 -1.79 3.16 -10.79 -0.03 -1.82 16 22 C -0.14 -2.18 9.19 71.98 0.66 -1.52 16 23 C -0.14 -2.64 9.09 71.98 0.65 -1.98 16 24 N -0.62 -24.52 9.24 -306.32 -2.83 -27.35 16 25 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.05 1.64 7.87 -2.39 -0.02 1.62 16 27 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.08 4.14 5.97 -2.38 -0.01 4.12 16 29 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.27 13.57 8.31 -92.71 -0.77 12.79 16 31 H 0.39 15.87 8.73 -92.71 -0.81 15.06 16 32 H 0.12 5.54 6.13 -2.91 -0.02 5.52 16 33 H 0.16 4.15 8.06 -2.91 -0.02 4.12 16 34 H 0.15 3.95 8.06 -2.91 -0.02 3.93 16 35 H 0.05 1.53 8.10 -2.39 -0.02 1.51 16 36 H 0.05 1.48 8.10 -2.39 -0.02 1.47 16 37 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 39 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 43 H 0.05 1.04 7.82 -2.39 -0.02 1.03 16 Total: -1.00 -57.54 351.55 2.71 -54.83 By element: Atomic # 1 Polarization: 30.82 SS G_CDS: 0.17 Total: 30.99 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: 5.52 Total: -12.09 kcal Atomic # 7 Polarization: -103.49 SS G_CDS: -4.14 Total: -107.63 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: -0.87 Total: -10.56 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.46 kcal Total: -57.54 2.71 -54.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161053313.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.854 kcal (2) G-P(sol) polarization free energy of solvation -57.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds