Wall clock time and date at job start Tue Mar 31 2020 01:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46894 * 2 1 4 4 N 1.46907 * 109.47121 * 175.72791 * 3 2 1 5 5 C 1.46901 * 110.99632 * 66.16325 * 4 3 2 6 6 C 1.53000 * 109.47165 * 58.22127 * 5 4 3 7 7 O 1.42902 * 109.46976 * 65.98734 * 6 5 4 8 8 C 1.42900 * 114.00024 * 182.71714 * 7 6 5 9 9 C 1.38091 * 110.99956 * 190.11292 * 4 3 2 10 10 N 1.32268 * 119.90446 * 341.78729 * 9 4 3 11 11 C 1.31972 * 121.85924 * 180.02562 * 10 9 4 12 12 C 1.50705 * 119.27043 * 179.97438 * 11 10 9 13 13 C 1.38684 * 121.45031 * 0.27487 * 11 10 9 14 14 C 1.38006 * 119.62365 * 359.44836 * 13 11 10 15 15 C 1.41000 * 118.28399 * 0.53415 * 14 13 11 16 16 C 1.41015 * 120.70866 * 179.70659 * 15 14 13 17 17 H 1.07997 * 120.00682 * 152.36218 * 16 15 14 18 18 C 1.39947 * 119.99743 * 332.36439 * 16 15 14 19 19 N 1.30873 * 120.00203 * 344.13288 * 18 16 15 20 20 Si 1.86799 * 119.99961 * 164.13498 * 18 16 15 21 21 H 1.48504 * 109.47194 * 59.99906 * 20 18 16 22 22 H 1.48502 * 109.47100 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47406 * 299.99786 * 20 18 16 24 24 H 1.09001 * 109.47418 * 299.99581 * 1 2 3 25 25 H 1.08997 * 109.47255 * 60.00032 * 1 2 3 26 26 H 1.08998 * 109.47091 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47418 * 240.00419 * 2 1 3 28 28 H 1.09003 * 109.47037 * 119.99566 * 2 1 3 29 29 H 1.09005 * 109.47194 * 55.73650 * 3 2 1 30 30 H 1.08994 * 109.47435 * 295.73233 * 3 2 1 31 31 H 1.08996 * 109.47401 * 178.22442 * 5 4 3 32 32 H 1.09004 * 109.47203 * 298.22331 * 5 4 3 33 33 H 1.09000 * 109.46831 * 185.98177 * 6 5 4 34 34 H 1.08995 * 109.47225 * 305.98251 * 6 5 4 35 35 H 1.08999 * 109.47069 * 179.97438 * 8 7 6 36 36 H 1.09001 * 109.47000 * 300.00371 * 8 7 6 37 37 H 1.09000 * 109.46834 * 59.99930 * 8 7 6 38 38 H 1.09003 * 109.46858 * 90.00159 * 12 11 10 39 39 H 1.09003 * 109.46716 * 209.99541 * 12 11 10 40 40 H 1.08996 * 109.47537 * 329.99776 * 12 11 10 41 41 H 1.07999 * 120.18502 * 179.70674 * 13 11 10 42 42 H 1.08003 * 120.85502 * 180.23743 * 14 13 11 43 43 H 0.96998 * 120.00207 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5053 1.4439 0.1032 5 6 4.1181 0.8591 -1.0971 6 6 3.6764 1.6483 -2.3312 7 8 4.2097 2.9725 -2.2658 8 6 3.8047 3.8162 -3.3457 9 6 3.9841 2.7187 0.3322 10 7 3.2188 3.7665 0.0755 11 6 3.6373 5.0014 0.2794 12 6 2.7165 6.1526 -0.0339 13 6 4.9079 5.2632 0.7697 14 6 5.7551 4.2143 1.0639 15 6 5.2942 2.9005 0.8410 16 6 6.1194 1.7911 1.1179 17 1 5.6774 0.8412 1.3799 18 6 7.5114 1.9211 1.0534 19 7 8.0451 2.9510 0.4475 20 14 8.6076 0.6243 1.8319 21 1 8.3406 -0.6933 1.2011 22 1 10.0317 0.9916 1.6262 23 1 8.3221 0.5434 3.2869 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6155 1.9780 0.8494 30 1 1.7404 1.9338 -0.9257 31 1 5.2036 0.9012 -1.0082 32 1 3.8017 -0.1792 -1.1974 33 1 4.0437 1.1528 -3.2299 34 1 2.5879 1.6960 -2.3616 35 1 4.2509 4.8031 -3.2227 36 1 4.1355 3.3824 -4.2894 37 1 2.7185 3.9067 -3.3484 38 1 2.1264 6.3966 0.8495 39 1 3.3070 7.0206 -0.3274 40 1 2.0504 5.8734 -0.8501 41 1 5.2310 6.2821 0.9244 42 1 6.7473 4.3952 1.4503 43 1 9.0098 3.0409 0.4024 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163648623.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:24 Heat of formation + Delta-G solvation = -10.141147 kcal Electronic energy + Delta-G solvation = -23415.225831 eV Core-core repulsion = 20267.574920 eV Total energy + Delta-G solvation = -3147.650911 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.26225 -37.25085 -35.97678 -34.05688 -32.85729 -30.74258 -30.24560 -28.27157 -27.63780 -25.70850 -25.30248 -23.66066 -22.42029 -21.10318 -20.11353 -19.20506 -17.11857 -16.20654 -15.95277 -15.41781 -15.32603 -14.62071 -14.47214 -14.02598 -13.75193 -13.69329 -13.02117 -12.89531 -12.61568 -12.08536 -11.96771 -11.82431 -11.54214 -11.51336 -11.39872 -11.31309 -11.23541 -10.99217 -10.80404 -10.74684 -10.50977 -10.47770 -10.33544 -10.11592 -9.63155 -9.15932 -8.95120 -8.32899 -7.83937 -7.74605 -6.86256 -6.56717 -4.19104 2.78289 3.08602 3.10991 3.15030 3.33421 3.99195 4.43381 4.69162 4.87625 5.34922 5.42690 5.56870 5.63235 5.70684 5.77453 5.85034 5.86718 5.92507 5.93982 6.05690 6.12556 6.17294 6.18570 6.20558 6.26344 6.40248 6.48866 6.49170 6.60588 6.61154 6.73134 6.90750 7.01923 7.14333 7.26910 7.30555 7.71566 7.85466 7.88911 8.01691 8.20211 8.41785 8.76400 8.89107 9.09944 9.83805 10.26889 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013335 B = 0.008093 C = 0.006466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.249675 B = 3458.936594 C = 4328.987255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.125 4.125 3 C 0.067 3.933 4 N -0.453 5.453 5 C 0.058 3.942 6 C 0.029 3.971 7 O -0.348 6.348 8 C 0.042 3.958 9 C 0.207 3.793 10 N -0.480 5.480 11 C 0.006 3.994 12 C -0.071 4.071 13 C -0.159 4.159 14 C -0.129 4.129 15 C 0.085 3.915 16 C -0.437 4.437 17 H 0.087 0.913 18 C 0.073 3.927 19 N -0.796 5.796 20 Si 0.905 3.095 21 H -0.266 1.266 22 H -0.281 1.281 23 H -0.265 1.265 24 H 0.052 0.948 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.041 0.959 31 H 0.101 0.899 32 H 0.078 0.922 33 H 0.035 0.965 34 H 0.044 0.956 35 H 0.077 0.923 36 H 0.025 0.975 37 H 0.030 0.970 38 H 0.044 0.956 39 H 0.048 0.952 40 H 0.049 0.951 41 H 0.090 0.910 42 H 0.119 0.881 43 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.794 -2.349 -3.855 8.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.163 4.163 3 C -0.061 4.061 4 N -0.172 5.172 5 C -0.069 4.069 6 C -0.050 4.050 7 O -0.266 6.266 8 C -0.056 4.056 9 C -0.027 4.027 10 N -0.192 5.192 11 C -0.133 4.133 12 C -0.128 4.128 13 C -0.180 4.180 14 C -0.156 4.156 15 C 0.079 3.921 16 C -0.468 4.468 17 H 0.105 0.895 18 C -0.144 4.144 19 N -0.422 5.422 20 Si 0.730 3.270 21 H -0.190 1.190 22 H -0.207 1.207 23 H -0.190 1.190 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.059 0.941 31 H 0.119 0.881 32 H 0.096 0.904 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.095 0.905 36 H 0.043 0.957 37 H 0.048 0.952 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.108 0.892 42 H 0.137 0.863 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.132 -2.616 -3.693 8.446 hybrid contribution 1.143 0.103 -0.406 1.218 sum -5.989 -2.513 -4.099 7.680 Atomic orbital electron populations 1.21699 0.96337 1.00851 1.01552 1.21609 0.94804 0.97851 1.02025 1.21897 0.88176 0.94681 1.01330 1.59339 1.05087 1.18571 1.34163 1.22335 1.02953 0.95907 0.85731 1.23175 0.97401 0.85242 0.99132 1.88245 1.71382 1.21442 1.45514 1.22531 0.98316 0.95276 0.89455 1.19156 0.93526 0.86203 1.03812 1.66672 1.38105 0.98869 1.15571 1.19871 0.93681 0.90989 1.08725 1.20247 0.97644 0.95067 0.99889 1.21285 0.95142 0.97887 1.03645 1.21411 0.99405 0.91865 1.02876 1.17875 0.90825 0.93391 0.90018 1.19384 0.89847 0.97800 1.39751 0.89533 1.25936 0.99107 0.96225 0.93155 1.69840 1.13165 1.28102 1.31065 0.86418 0.78368 0.81429 0.80781 1.19029 1.20652 1.18959 0.92851 0.93223 0.93199 0.92647 0.91423 0.91311 0.94122 0.88074 0.90426 0.94683 0.93826 0.90481 0.95681 0.95170 0.93671 0.93292 0.93179 0.89166 0.86299 0.91065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.91 37.16 0.37 -1.44 16 2 C -0.12 -1.84 5.75 -26.73 -0.15 -1.99 16 3 C 0.07 1.23 3.87 -3.82 -0.01 1.22 16 4 N -0.45 -9.64 4.10 -172.66 -0.71 -10.35 16 5 C 0.06 1.13 5.38 -3.82 -0.02 1.11 16 6 C 0.03 0.54 5.75 37.16 0.21 0.75 16 7 O -0.35 -7.50 7.81 -35.23 -0.28 -7.78 16 8 C 0.04 0.73 11.01 101.05 1.11 1.84 16 9 C 0.21 5.03 4.14 -155.02 -0.64 4.39 16 10 N -0.48 -11.35 7.71 -8.11 -0.06 -11.42 16 11 C 0.01 0.14 6.79 -82.36 -0.56 -0.42 16 12 C -0.07 -1.31 10.15 36.01 0.37 -0.94 16 13 C -0.16 -3.79 9.69 -39.50 -0.38 -4.18 16 14 C -0.13 -3.38 8.77 -38.62 -0.34 -3.72 16 15 C 0.08 2.23 5.44 -106.47 -0.58 1.65 16 16 C -0.44 -11.29 7.07 -37.89 -0.27 -11.56 16 17 H 0.09 2.21 7.65 -52.49 -0.40 1.80 16 18 C 0.07 1.80 5.18 -17.32 -0.09 1.71 16 19 N -0.80 -20.44 11.10 55.55 0.62 -19.82 16 20 Si 0.91 18.69 29.59 -169.99 -5.03 13.66 16 21 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 22 H -0.28 -5.71 7.11 56.52 0.40 -5.30 16 23 H -0.26 -5.48 7.11 56.52 0.40 -5.07 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.77 6.80 -51.93 -0.35 0.42 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.07 1.37 7.89 -51.93 -0.41 0.96 16 30 H 0.04 0.78 5.72 -51.93 -0.30 0.48 16 31 H 0.10 2.28 6.51 -51.93 -0.34 1.94 16 32 H 0.08 1.28 6.65 -51.93 -0.35 0.94 16 33 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.04 0.78 5.93 -51.93 -0.31 0.47 16 35 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.05 0.82 8.07 -51.93 -0.42 0.40 16 40 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.09 1.94 8.06 -52.49 -0.42 1.51 16 42 H 0.12 3.19 6.43 -52.48 -0.34 2.85 16 43 H 0.28 6.60 8.30 -40.82 -0.34 6.27 16 LS Contribution 339.97 15.07 5.12 5.12 Total: -1.00 -28.12 339.97 -8.32 -36.44 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -6.99 Total: 5.72 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: -0.99 Total: -11.57 kcal Atomic # 7 Polarization: -41.43 SS G_CDS: -0.15 Total: -41.59 kcal Atomic # 8 Polarization: -7.50 SS G_CDS: -0.28 Total: -7.78 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.66 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.12 -8.32 -36.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163648623.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.297 kcal (2) G-P(sol) polarization free energy of solvation -28.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds