Wall clock time and date at job start Tue Mar 31 2020 00:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46881 * 2 1 4 4 C 1.52998 * 109.47678 * 120.00287 * 2 1 3 5 5 N 1.46494 * 109.47074 * 64.99967 * 4 2 1 6 6 C 1.36020 * 119.61633 * 89.99924 * 5 4 2 7 7 C 1.35215 * 120.82074 * 179.69932 * 6 5 4 8 8 C 1.40264 * 120.04360 * 0.28079 * 7 6 5 9 9 C 1.36773 * 119.23558 * 359.97438 * 8 7 6 10 10 N 1.40050 * 120.39834 * 179.97438 * 9 8 7 11 11 C 1.46498 * 119.99605 * 359.97438 * 10 9 8 12 12 C 1.53004 * 109.46984 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.47210 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.47256 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99531 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99960 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00402 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99668 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47298 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47269 * 119.99583 * 18 16 14 21 21 H 1.48502 * 109.46958 * 239.99625 * 18 16 14 22 22 C 1.34675 * 119.62098 * 270.26219 * 5 4 2 23 23 O 1.22076 * 120.03319 * 359.97438 * 22 5 4 24 24 H 1.08993 * 109.47758 * 59.99878 * 1 2 3 25 25 H 1.09008 * 109.46795 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47073 * 299.99401 * 1 2 3 27 27 H 1.09004 * 109.47073 * 240.00599 * 2 1 3 28 28 H 1.09004 * 109.47203 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47146 * 300.00110 * 3 2 1 30 30 H 1.08999 * 109.46870 * 59.99942 * 3 2 1 31 31 H 1.09001 * 109.46543 * 305.00275 * 4 2 1 32 32 H 1.08999 * 109.47187 * 185.00244 * 4 2 1 33 33 H 1.08002 * 119.59228 * 359.97438 * 6 5 4 34 34 H 1.08008 * 119.98144 * 180.25930 * 7 6 5 35 35 H 1.07996 * 120.38312 * 180.02562 * 8 7 6 36 36 H 0.96991 * 120.00221 * 179.97438 * 10 9 8 37 37 H 1.08998 * 109.47589 * 299.99808 * 11 10 9 38 38 H 1.09006 * 109.47375 * 60.00356 * 11 10 9 39 39 H 1.09000 * 109.47238 * 300.00148 * 12 11 10 40 40 H 1.08993 * 109.46970 * 60.00147 * 12 11 10 41 41 H 1.09000 * 109.46892 * 300.00055 * 13 12 11 42 42 H 1.08998 * 109.47661 * 59.99780 * 13 12 11 43 43 H 0.96991 * 120.00092 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 1.6526 -2.1328 1.1904 6 6 2.4852 -3.0346 0.6041 7 6 2.1546 -4.3443 0.5419 8 6 0.9377 -4.7878 1.0804 9 6 0.0967 -3.8819 1.6658 10 7 -1.1245 -4.2979 2.2107 11 6 -1.5079 -5.7108 2.1552 12 6 -2.8762 -5.8942 2.8149 13 6 -3.2763 -7.3699 2.7575 14 6 -4.6243 -7.5505 3.4068 15 1 -5.1434 -6.6980 3.8195 16 6 -5.1943 -8.8040 3.4748 17 7 -4.5619 -9.8421 2.9728 18 14 -6.8647 -9.0279 4.2803 19 1 -7.3616 -7.7144 4.7630 20 1 -7.8208 -9.5859 3.2904 21 1 -6.7396 -9.9616 5.4283 22 6 0.4738 -2.5218 1.7128 23 8 -0.2652 -1.7004 2.2320 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 3.1300 1.4426 -0.0005 29 1 1.6765 1.9564 -0.8900 30 1 1.6765 1.9563 0.8900 31 1 1.6054 -0.2618 2.1369 32 1 3.1264 -0.6443 1.2950 33 1 3.4239 -2.7012 0.1870 34 1 2.8278 -5.0493 0.0769 35 1 0.6684 -5.8326 1.0340 36 1 -1.7164 -3.6507 2.6248 37 1 -1.5605 -6.0324 1.1151 38 1 -0.7661 -6.3097 2.6837 39 1 -2.8241 -5.5725 3.8551 40 1 -3.6177 -5.2955 2.2861 41 1 -3.3283 -7.6920 1.7175 42 1 -2.5347 -7.9684 3.2865 43 1 -4.9631 -10.7239 3.0203 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168434159.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:00 Heat of formation + Delta-G solvation = -25.613361 kcal Electronic energy + Delta-G solvation = -21252.106619 eV Core-core repulsion = 18103.784783 eV Total energy + Delta-G solvation = -3148.321837 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.41346 -37.42573 -36.78916 -35.78642 -33.82585 -32.47396 -31.11420 -28.72144 -27.39641 -27.07522 -26.34293 -23.75462 -22.69358 -21.95468 -20.45507 -20.32833 -17.69911 -17.52265 -16.42947 -16.15032 -16.07670 -15.44869 -14.98663 -14.71232 -14.57570 -14.43649 -13.98383 -13.77516 -13.14188 -12.56615 -12.46301 -12.35377 -12.24159 -12.22419 -12.13580 -12.01014 -11.66828 -11.24051 -11.16138 -11.03779 -10.94677 -10.67447 -10.54020 -10.41109 -9.90767 -9.76260 -9.45904 -9.11090 -8.84745 -8.37442 -6.82360 -6.02346 -4.04667 1.14952 1.98678 2.57193 3.30589 3.38078 3.42591 3.76466 3.80625 4.40220 4.45398 4.52124 4.62785 4.71346 4.84703 5.04859 5.20530 5.28743 5.33875 5.35706 5.39013 5.48357 5.59077 5.66213 5.67669 5.75058 5.79262 5.89060 6.00809 6.11464 6.17901 6.21774 6.38389 6.61105 6.62347 6.71447 6.99690 7.08776 7.46697 7.63062 7.75523 7.95883 7.97453 8.08917 8.39172 9.02071 9.59673 11.09102 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.034776 B = 0.002839 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.958380 B = 9860.242628 C =10433.339867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.110 4.110 3 C -0.144 4.144 4 C 0.101 3.899 5 N -0.485 5.485 6 C 0.037 3.963 7 C -0.155 4.155 8 C -0.172 4.172 9 C 0.114 3.886 10 N -0.720 5.720 11 C 0.124 3.876 12 C -0.121 4.121 13 C 0.025 3.975 14 C -0.520 4.520 15 H 0.056 0.944 16 C 0.056 3.944 17 N -0.895 5.895 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.509 3.491 23 O -0.552 6.552 24 H 0.049 0.951 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.150 0.850 34 H 0.137 0.863 35 H 0.130 0.870 36 H 0.405 0.595 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.018 0.982 42 H 0.018 0.982 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.140 17.894 -7.454 26.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.129 4.129 3 C -0.202 4.202 4 C -0.021 4.021 5 N -0.199 5.199 6 C -0.087 4.087 7 C -0.178 4.178 8 C -0.202 4.202 9 C 0.005 3.995 10 N -0.348 5.348 11 C 0.001 3.999 12 C -0.159 4.159 13 C -0.013 4.013 14 C -0.559 4.559 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.534 5.534 18 Si 0.720 3.280 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C 0.308 3.692 23 O -0.435 6.435 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.115 0.885 32 H 0.106 0.894 33 H 0.168 0.832 34 H 0.155 0.845 35 H 0.148 0.852 36 H 0.240 0.760 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.037 0.963 42 H 0.037 0.963 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 17.598 18.059 -7.136 26.206 hybrid contribution -1.030 -0.221 0.461 1.150 sum 16.568 17.838 -6.675 25.244 Atomic orbital electron populations 1.21842 0.93935 1.02456 1.01713 1.21495 0.97428 0.96441 0.97517 1.21773 1.00769 0.95195 1.02456 1.22000 1.00437 0.79172 1.00444 1.44942 1.17238 1.09164 1.48589 1.21395 0.96376 0.89898 1.01007 1.20292 0.98215 0.94192 1.05108 1.20630 0.95149 0.99919 1.04538 1.18592 0.89930 0.91971 0.99024 1.44833 1.17508 1.09648 1.62795 1.21643 0.97988 0.79688 1.00585 1.21859 0.92870 1.01845 0.99311 1.19030 0.96419 0.88331 0.97489 1.21258 1.03447 0.93511 1.37658 0.92588 1.25022 0.97762 0.96088 0.95611 1.69965 1.38320 0.99283 1.45876 0.86526 0.84115 0.78165 0.79146 1.19733 1.20982 1.20989 1.16681 0.81705 0.89078 0.81759 1.90946 1.51057 1.54230 1.47266 0.93167 0.92648 0.91846 0.90863 0.92533 0.92140 0.92252 0.88529 0.89446 0.83246 0.84492 0.85169 0.75986 0.92401 0.92390 0.92699 0.92696 0.96320 0.96315 0.93009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 7.91 37.16 0.29 -1.23 16 2 C -0.11 -0.88 3.13 -90.62 -0.28 -1.17 16 3 C -0.14 -0.87 9.19 37.16 0.34 -0.53 16 4 C 0.10 0.87 4.94 -4.05 -0.02 0.85 16 5 N -0.49 -5.38 2.49 -119.51 -0.30 -5.68 16 6 C 0.04 0.34 10.28 -16.77 -0.17 0.17 16 7 C -0.15 -1.56 10.00 -39.90 -0.40 -1.96 16 8 C -0.17 -2.27 9.36 -39.35 -0.37 -2.63 16 9 C 0.11 1.74 6.68 -83.50 -0.56 1.18 16 10 N -0.72 -11.85 5.73 -58.45 -0.34 -12.18 16 11 C 0.12 2.15 4.93 -4.04 -0.02 2.13 16 12 C -0.12 -2.47 5.27 -26.73 -0.14 -2.61 16 13 C 0.02 0.63 4.97 -27.88 -0.14 0.50 16 14 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 15 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -26.83 13.29 55.43 0.74 -26.10 16 18 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 19 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 22 C 0.51 7.52 6.00 -15.17 -0.09 7.43 16 23 O -0.55 -9.40 14.11 4.85 0.07 -9.33 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.74 6.04 -51.92 -0.31 0.43 16 26 H 0.06 0.74 7.96 -51.93 -0.41 0.33 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.10 0.97 7.40 -51.93 -0.38 0.59 16 32 H 0.09 0.50 8.01 -51.93 -0.42 0.08 16 33 H 0.15 0.80 8.04 -52.49 -0.42 0.38 16 34 H 0.14 1.02 8.06 -52.48 -0.42 0.59 16 35 H 0.13 1.70 6.77 -52.49 -0.36 1.35 16 36 H 0.40 6.81 7.93 -40.82 -0.32 6.48 16 37 H 0.06 0.99 7.97 -51.93 -0.41 0.58 16 38 H 0.06 0.99 7.96 -51.93 -0.41 0.58 16 39 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 349.18 15.07 5.26 5.26 Total: -1.00 -31.95 349.18 -8.78 -40.73 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -7.22 Total: 1.99 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: -1.97 Total: -11.43 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: 0.10 Total: -43.96 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.07 Total: -9.33 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.95 -8.78 -40.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168434159.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.114 kcal (2) G-P(sol) polarization free energy of solvation -31.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds