Wall clock time and date at job start Tue Mar 31 2020 00:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46881 * 2 1 4 4 C 1.52998 * 109.47678 * 120.00287 * 2 1 3 5 5 N 1.46494 * 109.47074 * 64.99967 * 4 2 1 6 6 C 1.36020 * 119.61633 * 89.99924 * 5 4 2 7 7 C 1.35215 * 120.82074 * 179.69932 * 6 5 4 8 8 C 1.40264 * 120.04360 * 0.28079 * 7 6 5 9 9 C 1.36773 * 119.23558 * 359.97438 * 8 7 6 10 10 N 1.40050 * 120.39834 * 179.97438 * 9 8 7 11 11 C 1.46498 * 119.99605 * 359.97438 * 10 9 8 12 12 C 1.53004 * 109.46984 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.47210 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.47256 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99531 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99960 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00402 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99668 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47298 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47269 * 119.99583 * 18 16 14 21 21 H 1.48502 * 109.46958 * 239.99625 * 18 16 14 22 22 C 1.34675 * 119.62098 * 270.26219 * 5 4 2 23 23 O 1.22076 * 120.03319 * 359.97438 * 22 5 4 24 24 H 1.08993 * 109.47758 * 59.99878 * 1 2 3 25 25 H 1.09008 * 109.46795 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47073 * 299.99401 * 1 2 3 27 27 H 1.09004 * 109.47073 * 240.00599 * 2 1 3 28 28 H 1.09004 * 109.47203 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47146 * 300.00110 * 3 2 1 30 30 H 1.08999 * 109.46870 * 59.99942 * 3 2 1 31 31 H 1.09001 * 109.46543 * 305.00275 * 4 2 1 32 32 H 1.08999 * 109.47187 * 185.00244 * 4 2 1 33 33 H 1.08002 * 119.59228 * 359.97438 * 6 5 4 34 34 H 1.08008 * 119.98144 * 180.25930 * 7 6 5 35 35 H 1.07996 * 120.38312 * 180.02562 * 8 7 6 36 36 H 0.96991 * 120.00221 * 179.97438 * 10 9 8 37 37 H 1.08998 * 109.47589 * 299.99808 * 11 10 9 38 38 H 1.09006 * 109.47375 * 60.00356 * 11 10 9 39 39 H 1.09000 * 109.47238 * 300.00148 * 12 11 10 40 40 H 1.08993 * 109.46970 * 60.00147 * 12 11 10 41 41 H 1.09000 * 109.46892 * 300.00055 * 13 12 11 42 42 H 1.08998 * 109.47661 * 59.99780 * 13 12 11 43 43 H 0.96991 * 120.00092 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 1.6526 -2.1328 1.1904 6 6 2.4852 -3.0346 0.6041 7 6 2.1546 -4.3443 0.5419 8 6 0.9377 -4.7878 1.0804 9 6 0.0967 -3.8819 1.6658 10 7 -1.1245 -4.2979 2.2107 11 6 -1.5079 -5.7108 2.1552 12 6 -2.8762 -5.8942 2.8149 13 6 -3.2763 -7.3699 2.7575 14 6 -4.6243 -7.5505 3.4068 15 1 -5.1434 -6.6980 3.8195 16 6 -5.1943 -8.8040 3.4748 17 7 -4.5619 -9.8421 2.9728 18 14 -6.8647 -9.0279 4.2803 19 1 -7.3616 -7.7144 4.7630 20 1 -7.8208 -9.5859 3.2904 21 1 -6.7396 -9.9616 5.4283 22 6 0.4738 -2.5218 1.7128 23 8 -0.2652 -1.7004 2.2320 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 3.1300 1.4426 -0.0005 29 1 1.6765 1.9564 -0.8900 30 1 1.6765 1.9563 0.8900 31 1 1.6054 -0.2618 2.1369 32 1 3.1264 -0.6443 1.2950 33 1 3.4239 -2.7012 0.1870 34 1 2.8278 -5.0493 0.0769 35 1 0.6684 -5.8326 1.0340 36 1 -1.7164 -3.6507 2.6248 37 1 -1.5605 -6.0324 1.1151 38 1 -0.7661 -6.3097 2.6837 39 1 -2.8241 -5.5725 3.8551 40 1 -3.6177 -5.2955 2.2861 41 1 -3.3283 -7.6920 1.7175 42 1 -2.5347 -7.9684 3.2865 43 1 -4.9631 -10.7239 3.0203 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168434159.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:59 Heat of formation + Delta-G solvation = -44.605520 kcal Electronic energy + Delta-G solvation = -21252.930181 eV Core-core repulsion = 18103.784783 eV Total energy + Delta-G solvation = -3149.145399 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.36534 -38.48230 -37.83775 -36.83775 -35.53156 -33.91370 -32.55961 -29.99329 -28.18395 -27.98033 -27.77152 -25.30449 -23.69297 -23.25092 -22.03117 -21.15177 -18.79169 -18.58214 -18.30978 -17.25917 -17.03142 -16.58442 -16.30979 -16.23804 -15.84297 -15.51581 -15.06764 -14.62040 -14.33453 -13.92888 -13.86988 -13.72450 -13.32489 -13.16155 -13.12675 -12.90825 -12.87577 -12.81949 -12.52497 -12.30152 -12.17528 -11.92000 -11.76185 -11.69267 -11.52417 -11.25839 -11.21594 -10.91673 -10.57847 -9.85873 -8.22596 -7.89863 -6.33266 0.18019 1.03814 1.38782 1.38994 1.52404 1.67745 2.38884 2.64871 2.80474 3.10804 3.64085 3.82649 3.90622 3.97536 4.12730 4.19288 4.19734 4.36640 4.41592 4.50626 4.56310 4.57864 4.72729 4.78236 4.88676 4.93368 4.93636 5.04016 5.10079 5.11124 5.17000 5.22825 5.36955 5.40629 5.47323 5.47981 5.68590 5.81189 5.84088 6.08500 6.21520 6.37496 6.73788 6.82775 7.06994 7.35795 8.89499 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.034776 B = 0.002839 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.958380 B = 9860.242628 C =10433.339867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.103 4.103 3 C -0.139 4.139 4 C 0.095 3.905 5 N -0.480 5.480 6 C 0.067 3.933 7 C -0.175 4.175 8 C -0.151 4.151 9 C 0.065 3.935 10 N -0.735 5.735 11 C 0.144 3.856 12 C -0.105 4.105 13 C 0.029 3.971 14 C -0.545 4.545 15 H 0.057 0.943 16 C 0.001 3.999 17 N -0.930 5.930 18 Si 0.965 3.035 19 H -0.265 1.265 20 H -0.276 1.276 21 H -0.276 1.276 22 C 0.496 3.504 23 O -0.591 6.591 24 H 0.058 0.942 25 H 0.023 0.977 26 H 0.043 0.957 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.076 0.924 32 H 0.132 0.868 33 H 0.204 0.796 34 H 0.172 0.828 35 H 0.126 0.874 36 H 0.398 0.602 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.053 0.947 40 H 0.053 0.947 41 H -0.001 1.001 42 H -0.001 1.001 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.577 18.972 -8.446 29.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.122 4.122 3 C -0.197 4.197 4 C -0.025 4.025 5 N -0.192 5.192 6 C -0.058 4.058 7 C -0.197 4.197 8 C -0.181 4.181 9 C -0.041 4.041 10 N -0.365 5.365 11 C 0.020 3.980 12 C -0.143 4.143 13 C -0.008 4.008 14 C -0.583 4.583 15 H 0.075 0.925 16 C -0.197 4.197 17 N -0.571 5.571 18 Si 0.789 3.211 19 H -0.190 1.190 20 H -0.202 1.202 21 H -0.202 1.202 22 C 0.296 3.704 23 O -0.479 6.479 24 H 0.077 0.923 25 H 0.043 0.957 26 H 0.062 0.938 27 H 0.105 0.895 28 H 0.099 0.901 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.095 0.905 32 H 0.150 0.850 33 H 0.221 0.779 34 H 0.189 0.811 35 H 0.144 0.856 36 H 0.232 0.768 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.017 0.983 42 H 0.017 0.983 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 20.098 19.162 -8.157 28.942 hybrid contribution -1.611 -0.533 0.667 1.824 sum 18.487 18.628 -7.490 27.292 Atomic orbital electron populations 1.21805 0.96577 1.00196 1.01168 1.21475 0.95007 0.98047 0.97656 1.21740 1.02208 0.93405 1.02344 1.22285 1.02807 0.77491 0.99926 1.45159 1.16183 1.10764 1.47058 1.22286 0.96857 0.89151 0.97497 1.20691 0.97563 0.95637 1.05842 1.20994 0.95667 0.99479 1.01982 1.18787 0.90356 0.92967 1.02024 1.44540 1.18633 1.08515 1.64782 1.21234 0.95966 0.80845 0.99932 1.21578 0.94783 0.98320 0.99654 1.18902 0.95164 0.91187 0.95569 1.21685 1.04703 0.93887 1.38030 0.92510 1.25949 1.01916 0.95734 0.96111 1.70081 1.40204 0.99852 1.46913 0.85404 0.79043 0.78384 0.78245 1.18951 1.20188 1.20190 1.16724 0.82724 0.88655 0.82292 1.90909 1.52539 1.54920 1.49492 0.92294 0.95739 0.93773 0.89523 0.90116 0.91809 0.92920 0.90532 0.85043 0.77904 0.81110 0.85569 0.76790 0.92576 0.92499 0.92810 0.92854 0.98301 0.98271 0.92642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 7.91 71.98 0.57 -2.46 16 2 C -0.10 -1.41 3.13 -10.79 -0.03 -1.44 16 3 C -0.14 -1.28 9.19 71.98 0.66 -0.62 16 4 C 0.10 1.39 4.94 86.38 0.43 1.81 16 5 N -0.48 -9.61 2.49 -650.12 -1.62 -11.22 16 6 C 0.07 0.91 10.28 83.35 0.86 1.76 16 7 C -0.17 -2.92 10.00 22.07 0.22 -2.70 16 8 C -0.15 -3.85 9.36 22.42 0.21 -3.64 16 9 C 0.06 2.02 6.68 38.22 0.26 2.27 16 10 N -0.73 -25.53 5.73 -338.84 -1.94 -27.47 16 11 C 0.14 5.23 4.93 86.38 0.43 5.66 16 12 C -0.11 -4.50 5.27 30.60 0.16 -4.34 16 13 C 0.03 1.57 4.97 29.85 0.15 1.71 16 14 C -0.55 -31.66 9.11 25.60 0.23 -31.43 16 15 H 0.06 3.21 7.74 -2.91 -0.02 3.18 16 16 C 0.00 0.05 5.46 84.65 0.46 0.51 16 17 N -0.93 -56.80 13.29 21.45 0.28 -56.52 16 18 Si 0.96 45.00 29.54 68.60 2.03 47.02 16 19 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 21 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 22 C 0.50 14.88 6.00 84.99 0.51 15.39 16 23 O -0.59 -21.36 14.11 -5.56 -0.08 -21.44 16 24 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.02 0.67 6.04 -2.38 -0.01 0.65 16 26 H 0.04 1.10 7.96 -2.38 -0.02 1.08 16 27 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 28 H 0.08 0.39 8.14 -2.38 -0.02 0.37 16 29 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.08 1.48 7.40 -2.39 -0.02 1.46 16 32 H 0.13 0.79 8.01 -2.39 -0.02 0.77 16 33 H 0.20 0.66 8.04 -2.91 -0.02 0.63 16 34 H 0.17 1.72 8.06 -2.91 -0.02 1.69 16 35 H 0.13 3.26 6.77 -2.91 -0.02 3.24 16 36 H 0.40 14.45 7.93 -92.71 -0.74 13.71 16 37 H 0.06 2.01 7.97 -2.39 -0.02 1.99 16 38 H 0.06 2.03 7.96 -2.38 -0.02 2.01 16 39 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 42 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 43 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -73.38 349.18 4.02 -69.35 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: 0.24 Total: 17.80 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: 5.11 Total: -17.51 kcal Atomic # 7 Polarization: -91.94 SS G_CDS: -3.27 Total: -95.22 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.08 Total: -21.44 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Total: -73.38 4.02 -69.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168434159.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.746 kcal (2) G-P(sol) polarization free energy of solvation -73.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds